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Query: PF09861.7; Q3AFZ6_CARHZ/7-206; Domain of unknown function (DUF2088 topsan), from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst FGKEKKQLSVKSENLLGVLVPNQVEVELTGKEEVIRALNNPIDSPKLREIAKPGEKIAIITSDITRPVPNKILLPLVLEELWQAGVKDEDITIVFALGSHRFHTEEEKISLVGEEIYHRIKCIDSDQRDCVRLGYTKFGTPVDVFRPVAEADRRICLGNIEYHYFAGYSGGAKAIMPGVSSREAIQANHSRMVEVEAHAGLast
1 -97.100PF09861.7; Q3AFZ6_CARHZ/7-206; Domain of unknown function (DUF2088 topsan)  ali  100  1FGKEKKQLSVKSENLLGVLVPNQVEVELTGKEEVIRALNNPIDSPKLREIAKPGEKIAIITSDITRPVPNKILLPLVLEELWQAGVKDEDITIVFALGSHRFHTEEEKISLVGEEIYHRIKCIDSDQRDCVRLGYTKFGTPVDVFRPVAEADRRICLGNIEYHYFAGYSGGAKAIMPGVSSREAIQANHSRMVEVEAHAG 200
2 -11.800PF04015.10; R5F4T0_9CLOT/38-230; Domain of unknown function (DUF362 topsan)  ali follow..  16  4.....................................................KPNLVTAKAPSSGATTHSELLAGVIEYLREHGFQN----ITIMEGSWVGDHTEDAFQAAGHQVCSRYSVPFVDLQRDTWKEYDAAGMKIKLCDKAAAVDYMINMPVLKGHCQTTVTCALKNNK-GVIPNSEKRRFHTLGLHK..... 141
3 -8.040PF03193.14; RSGA_YERPE/99-276; Protein of unknown function, DUF258 topsan  ali follow..  15  5..................................TSVLTRPDLYDGVKPIAANIDQIVIVS--AILPELSLNIIDRYLVACETLEVEPNKIDLLDADGRKFVDGMMDIYRRIGYDVLEVSSQTREGMEAFIFAGQSGVGKSSLLNALLPPTDNEILVNTVSGNSGLG-HGGDVIDSPGVREF.................. 175
4 -7.390PF02547.13; G7VA61_THELD/11-349; Queuosine biosynthesis protein  ali follow..  15  151........................................PYIRSTDAEPDRYQTIFAERLGSAAAPTAGLHFTPKLLDELERKGVKIAHVTLHVGIGTFKPIAAKDVRQSLPDETAKLINETKRKGGKIVAVGTTVVRTLETMVDD--MGAAISGSGWTQKFIYPGYT----LLVSAFAGYENIMNAYQEAIKLR.... 327
5 -7.260PF14031.4; S3C2S4_OPHP1/312-445; Putative serine dehydratase domain  ali follow..  15  4........................................................................VLADVASIYPGGGDRGVSDEVLINVGCLGLSRETVKDVPVGAPVYTGLGIVKPWAEGQEDVIAIPGDDFPRLPAADGKKGWWQVNRVSQEHGILTWAGPAPAPTPELGQRLQIWSNHA.......... 121
6 -7.140PF00753.25; PDLA_RHILO/30-244; Metallo-beta-lactamase superfamily  ali follow..  14  11.........................................IEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCRSEVPQACNPQPFEHLGYSDLSFSA-ATAQLLEGTTRANSTFEGIDGDVDLARG-VKLISTPGHSIGHYSLLVEFPRRKPI............... 173
7 -7.100PF14403.4; A4XVI7_PSEMY/72-445; Circularly permuted ATP-grasp type 2  ali follow..  15  53YQMAMQGLDLHRDIYAHIAGVDLVRDGDGSYYVLEDNLRTPSGVSYMLEDRKMMMRLFPELFAAQRVAPVDHYPNLLLDALKSSSPLDNPTVVVLTPGRFNSAYFEHLAREMGVELVEGADLFVRD--DKVYMRTTAGARQVFLDPLAFNPESMLGVAGLLSAYRSRNVVLANAIGTGVADDKSV............... 247
8 -6.460PF00809.20; DHPS_NEIMB/21-266; Pterin binding enzyme  ali follow..  14  6..................LTPDSFSDGGVYSQNAQTALAH------AEQLLKEGADILDIGGESTRSGADYVSPEEEWARVEPVLAEVAGWGVPISLDTRRTVIMEKALALGGIDIINDVAALNDEGAVELLARQADQGLPKTMQINPKYQDVVYLKARSAECIAAGIAPQRIILDPGFGSGFGKPLQHNIAL....... 187
9 -6.410PF05985.9; G0A1Z8_METMM/2-238; Ethanolamine ammonia-lyase light chain (EutC)  ali follow..  12  8..RRFTQARIALGRAGSAVTTAAYLDFQLAHAGARDAVLKTWDADGFAVQLLQQSLVPIRLNTLRRPDLGRRLDDDSLVRLKQLAEPGCDVAIIISNGLSSTAVETHGMPLL-QHIVARYMEMALSVAPICLVPNARVAISDPIGVLLQARLAVIMVG------------------PGLSAADSL............... 181
10 -6.310PF04514.10; VNS2_BTV10/1-349; Bluetongue virus non-structural protein NS2  ali follow..  16  36.................................................QIKIGRVVAFKPVKN--PEPKGYVLN------------------VPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELRQKIKNE.... 164

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.