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Query: PF01695.15; Y4IQ_RHISN/60-238; IstB-like ATP binding protein, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst HRRIERHLAEAHLPPGKTLESFAFDAVPMVSKAQVMAIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFLast
1 -102.000PF01695.15; Y4IQ_RHISN/60-238; IstB-like ATP binding protein  ali  100  1HRRIERHLAEAHLPPGKTLESFAFDAVPMVSKAQVMAIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIF 179
2 -20.000PF00308.16; DNAA_STRCO/317-535; Bacterial dnaA protein  ali follow..  18  19................................AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSS.............................. 137
3 -16.900PF00910.20; A7M6L1_9SECO/473-576; RNA helicase  ali follow..  12  1..................................................VYAYGESRTGKTLVVDKLITDFQNH-----------FGLGKDTVYSRNPIDQYWSGYRRQPIVSIDDFGAVTCDPSMEAQMIPLVSSMFDSKFIFCSSNL............................. 104
4 -12.800PF07652.12; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  15  1............................................FKKKQLIVLDPHPGAGKTKVLPEFIRQAVERRLWTLALAPTRVVKEIVDLMCHATFTMRLGRVPNYNMFIMDEAHFTDPSSIAARGYISTKVDMGEASAVFMTATPP............................ 137
5 -12.700PF04665.10; Q6TUP8_YMTV5/6-246; Poxvirus A32 protein  ali follow..  16  5.......................................YRKSLLKHPFRIALVGGSGSGKTAYLLSLFNTFVEKYRHIFLFTPVYSLITTKQKIEKYVKKQGNDKTTEMFLLILDDMGDKQIRSSCLLDFLN--HGRHLNTSIILLCQTYKH.......................... 140
6 -12.600PF06745.11; O29463_ARCFU/20-274; KaiC  ali follow..  16  29............................................IPHLAVMNITGVPDTGKSLLAEQFAITQAGSGYRVLYVTVESVIDASESDELRENPKALMETMAKVTNTIIDSITGLYEHKEMMQIVRQFFNFMKKYRQTGIFVSQKRSAQASESAEAA-VAHIVDGTI...... 196
7 -12.500PF07728.12; Q82S33_NITEU/475-632; AAA domain (dynein-related subfamily)  ali follow..  18  1.................................................NLILQGPPGTGKTWLAKRLAFALMGQKDDSKWRPTGEGKLSLADGVFMEAIKAASKDPSSKFVVVIEEINRGNPAQIFGELLTLLEAGKRTPNEALELCYPDADGKRRPVNIADRSLALVDLALRR.... 156
8 -12.400PF01443.16; RDRP_TMV/829-1085; Viral (Superfamily 1) RNA helicase  ali follow..  11  1..................................................VLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANSSGIIVATKDNVKTVDSFKRLFIDEGLMLHTG------CVNFLVAMSLCEIAYVYGD.............................. 105
9 -12.200PF05673.11; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)  ali follow..  19  9RKRQSLFGNIGYLQPVRQLPPIHLDDLKNIERQKDAIVANTRQFVSPANNVLLTGARGTGKSSLIKACLNAFVRDGLRLVEVDKDDLGD--------GDIVELVAQRPERFVIFCDDLSFEEGESGYKSLKSALVAAQSDNVLIYATSNRRH---PEYMKDNETYRHTDDGEIHPGEVV 184
10 -12.200PF01637.16; A8M939_CALMQ/15-228; ATPase domain predominantly from Archaea  ali follow..  18  6...................................VAIRQIEKLAEKGTWVVIYGPEGCGKSAFLKQAVEVLGEYDYSVVKVSLRGLFRDIMTRIAISLLYDVVRRRIRRKALLADDVFQAIGLDKAELLMIEYSSVDYERIVVIVATSEGVTW-GRIGRHRWAEIMAMWNM....... 178
11 -12.100PF13479.4; F5YIK8_TREPZ/11-202; AAA domain  ali follow..  15  4.................................................RCALFGPSGSGKTMTALRMAKGIAEARSASKYADRIPFDVDDLDGKTVDHYIAAMNECVKYKVLVIDSLSHA----------WRELTDEVDRIAQSSVSKNTFSPWAKV---NPKQKRFIDAILNPGHII 135
12 -11.900PF03266.13; NTPTH_METAC/3-167; NTPase  ali follow..  17  1.................................................RIAVTGSPGVGKSTVVAKT--EGHREGFSIRDLATGKTGILSHVKGSGPRLGKAVRNALACDLVVIDEIGPM---ELISQSFVSAVEEVLESDKPVLAV............................... 130
13 -11.700PF13337.4; R6V945_9CLOT/51-507; Putative ATP-dependent Lon protease  ali follow..  16  179..................LRSIGMEPDTLSYREKWLLLARMLPLVENNFNLCELGPRSTGKSHIFKEISNSILVSGGQT---TVANLFYNMGR--------KTVGLVGLWDCVAFDEVAGINFKDKDGIQIMKMASGSFARGSMVFVGNINQSVFDPFPPEMGTDTAFLDRM--HCYI. 345
14 -11.500PF12775.5; DYH17_HUMAN/2402-2673; P-loop containing dynein motor region D3  ali follow..  18  1.....................FELDPDVPLQASLVHTTETMDLLMEKSWPVMLVGNAGTGKSVLMGDKLESLNTDNYLVQAVTTSAMLQGVLEKPLEKKSGRNYGPPGTKKLVYIDDMNMPEVDKYGTVAPHTLIRQHMDHRHWYDRHKLTLKDIHNCMNPTSGSFTIDSRLQRHFCVF 175
15 -11.400PF08433.8; O46079_DROME/1-293; Chromatin associated protein KTI12  ali follow..  22  4..................................................VVITGLPASGKSTRARQLRDHFVERGRKVHLISENEAVPKAEKVVRSDLKSEASRHLNQEDLVILDAGNYIK-------------GYRYELYCMSKVSRTTQ........................... 105
16 -11.300PF13604.4; Q3L956_RHOE4/579-769; AAA domain  ali follow..  14  6..............................QIAMIEHFLTAKTKVA-----VAVGAAGAGKTTAAKVVARAWEQTNGKVIALGPSAKAADVLGAEIDVEGRTIADGIEKGDLLLVDEAGMA-----SARNLADLTRIATQSGAVVR-----------LLGDPLQLASV........... 133
17 -11.200PF02572.13; R5BPN3_9FIRM/40-219; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP  ali follow..  27  5..................................................ILVNTGDGKGKTTASLGVALRAVGNGYRVLILSEADLQAHRAAADNAWQMLTEEVMSDKWDLIIFDEINYVKFGLLPVEQVVDLLKTKPERLHVVLTGR.............................. 145
18 -11.000PF05496.10; RUVB_SOLUE/5-238; Holliday junction DNA helicase ruvB N-terminus  ali follow..  17  25......................DFTGQSKLKENLSIAIEAARMRGEAMDHVLLYGPPGLGKTTLASII---AEELQVQFTPTSGPVL-------QKKLDLTGILSNIRLHQVFFIDEIHRLLPDVEEEDFRVDILVGVGPGARTHSLPMPKFTAIGATTRQGLVSAPLRGRF....... 170
19 -10.700PF02374.13; ASNA_HUMAN/37-340; Anion-transporting ATPase  ali follow..  17  4..................................................IFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLM...... 155
20 -10.300PF07724.12; Q7PAG5_RICSI/595-759; AAA domain (Cdc48 subfamily)  ali follow..  15  5.................................................SFLFLGPTGVGKTELTKALAGFLFDDRNAILRIDMSEYMEKHAISRDQGGVLTEAVRRRPYQVILFDEV---KAHPDIFNIMLQILDE-FKNTIIVLTSNLG............................ 126
21 -10.100PF00004.27; LON_BRECH/351-493; ATPase family associated with various cellular activities (AAA)  ali follow..  19  1..................................................LCLVGPPGVGKTSLARSVARALGREFVRISLGGVRDEAERTYVGALPGRIIQGMKQAGTINVFLLDEIDKLASDFRGASALLEVLDPNQNDKFSDHYIEETYDLTNVMF--DTIPRPLLDRM....... 135
22 -9.970PF06431.9; Q8JUD5_POVJC/266-682; Polyomavirus large T antigen C-terminus  ali follow..  16  152............................................IPKKRYWLFKGPIDSGKTTLAAAL---LDLCGGKSLNVNMPL-----------ERSNFELGVGIDQFMVVFEDIGSVKVNLERKHQ-----KRTQVFPPGIVTMN.............................. 265
23 -9.970PF07088.9; GVPD1_HALSA/23-536; GvpD gas vesicle protein  ali follow..  16  8.............................................DAGETLLINGAPGTGKTLFTIRG-LDVLDRDSDVLYVSTRVDQETVHEMYEKLDLDSLLEWIQEILTIAFDSWELIHDDPPDIKTVTNQLAVLAREERLMLVTETAAPSSLEYIVDGVVTLQVKE......... 176
24 -9.940PF09439.8; SRPB_YEAST/36-221; Signal recognition particle receptor beta subunit  ali follow..  16  1.............................................SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSSCENGIDILIACNKS............................ 121
25 -9.840PF03481.11; R5ALB5_9CLOT/198-340; Putative GTP-binding controlling metal-binding  ali follow..  14  7...............................SAVIGEVQVARSILAPLREGETVASPGMKYKHYAPKADVIVIVGTPENTAKKVCELYNFAEMQGKSVEIAATLQTKGFYKGKKYAILGDRNHPETLCASLFSSLRSMDEHADMILA---------EGIPTDNAGLAYMNRLLRAA... 142
26 -9.340PF02562.14; A0LK93_SYNFM/124-328; PhoH-like protein  ali follow..  17  16............................................IRHYDIVFGVGPAGTGKTYLAMAMAVAAVEAGEKLGFLKVNPYLRPLYDALHDMMDFERATGLLQRGAIEVAPLAFMR-TLNDAFVILDEAQNTTTEQMKMFLTRLGLGSKAVITGD.................. 154
27 -9.240PF13481.4; B2JV40_BURP8/220-401; AAA domain  ali follow..  13  24.........................................DDVIPAHAVGAVWGASAAAKSFLVLDLAAALVFEPVPVLLVSLEGNNGLPRRYLA---WEKHNGRPVPARLHTLTQGFSLLDPRDTDDLCEAIETCGITGGVVFINSSADMGRAGAALNTLRERTGCTVIAVHHT... 177
28 -9.070PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein  ali follow..  20  41....................................DIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAE-SQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTG............ 204

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.