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Query: PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSETKVKVVKNKMAPPFREAIFQILYGKGVNLast
1 -146.000PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein  ali  100  1KALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSETKVKVVKNKMAPPFREAIFQILYGKGVN 262
2 -29.300PF13479.4; F5YIK8_TREPZ/11-202; AAA domain  ali follow..  19  5......................................................CALFGPSGSGKTMTALRAKGIADTMGVPFAVIDTEARSASKYADRIPFDVDDLDGKTVDHYIAAMNECV----KAGYKVLVIDSLSELTDEVDRIAQSSVSKNTFSPAKVNPKQKRFIDAILNFPGHIIATMRSKTVAPEKMGLAPEQGKGIEYEFDLLMELDQKHQATVTK.................................... 189
3 -24.400PF08423.9; W1Q8L5_OGAPD/106-359; Rad51  ali follow..  25  11........................QRRSELICLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLCHTLAVTCQ-GEGKCLYIDTEGTFRPAIARRFGLDENETLAYNADHQLQLLHQAASMMTESRFSLLIVDSIMALY-RTDYSGR---GELSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQVDIFNPDPKKPIGGNIVAHSSTTRLYFKRICKIYDSPCLAESETVFALGQGGVIDP............... 254
4 -23.900PF03846.12; SULA_PECAS/8-119; Cell division inhibitor SulA  ali follow..  13  3..............................NIESSSFSANQHAAEPSVATGGIISEIYNADQPIVTHLLLPLLQQLGTQSRWLLWLSPQQRLSRPWVQQSGLPLDKMVQLHHINPLFTVDAMERALLTGNYSAVLC.............................................................................................................................. 109
5 -19.400PF06745.11; O29463_ARCFU/20-274; KaiC  ali follow..  14  1...................IPTGTKLDELFYKVEKEGDRYVRKPL-GGIPHLAVMNITGVPDTGKSLLAEQFAITQAGSGYRVLYVTVESPANFLRSEAMGVDFTKVE-ELRENPKALMETMAYAIKEKKVTNTIIDSITGLYEHKEMM--------------ARQIVRQFFNFMKKYRQTGIFVSQKRSA-----SESAEAAGGLAVAHIVDGTIVLDKKLDVSLYGLPLGSILRIRIDGCRIAPHDSRVWVFEISEIGT. 247
6 -9.980PF07088.9; GVPD1_HALSA/23-536; GvpD gas vesicle protein  ali follow..  12  9..................................................AGETLLINGAPGTGKTLFTIRGLDVLDR-DSDVLYVSTRVDQETVHEMYFADHLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYEYLAVRHD--------DPPDIKTVTNQLAVLAREENIRLMLVTETAAPSSLEY----IVDGVVTLQVKEDDRGRTRRLRLDKLRGVRIGNRLQPFTLADQVITPVELLDLDRILSGGYN 256
7 -9.220PF09445.8; Q6CRW0_KLULA/100-266; RNA cap guanine-N2 methyltransferase  ali follow..  18  1...................................GNCIVDVFCGGGGNT--LFEKVYGIDSNIDHLYCAYKNAECYNSAVKLKLIDWEESLKKTLVKNLGKTPDCIFASPPWGGQDTYDLEEHLQPSPLSKILVCQNVVLFLPR------------NSDLDQLSSITHDLLGPDEKCKVVYVKDNGYMKGILAFWGRP............................................................... 167
8 -9.070PF01695.15; Y4IQ_RHISN/60-238; IstB-like ATP binding protein  ali follow..  20  37........................................AIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD-----------------LVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQA-----------------TSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLA.......................................................... 167
9 -8.820PF04665.10; Q6TUP8_YMTV5/6-246; Poxvirus A32 protein  ali follow..  13  16......................................................IALVGGSGSGKTAYLLSLFNTFVEKYRHIFLFTPVY--NSEYDSYIWPDHVNRVTTYEELDYSLITTKQKIEKTTEMFLLILDDMGDKQIRSSCLLDF-GRHLNTSIILLCQTYKHVPVNGRTSITHFCCCNVSDSDIENML.................................................................. 166
10 -8.310PF13481.4; B2JV40_BURP8/220-401; AAA domain  ali follow..  14  25..............................................DVIPAHAVGAVWGASAAAKSFLVLDLAAALTEEPVPVLLVSLEKHNGRPVPARLHTLTQGFSLLDPRDTDDLCEAIETC--GITGGVVFIDPFALATIGLE-ENSSAD---------MGRAGAALNTLRERTGCTVIAVHHTGK........................................................................ 179

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.