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Query: PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSETKVKVVKNKMAPPFREAIFQILYGKGVNLast
1 -146.000PF00154.19; RECA_ACIAD/7-268; recA bacterial DNA recombination protein  ali  100  1KALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSETKVKVVKNKMAPPFREAIFQILYGKGVN 262
2 -29.300PF13479.4; F5YIK8_TREPZ/11-202; AAA domain  ali follow..  19  5......................................................CALFGPSGSGKTMTALRAKGIADTMGVPFAVIDTEARSASKYADRIPFDVDDLDGKTVDHYIAAMNECV----KAGYKVLVIDSLSELTDEVDRIAQSSVSKNTFSPAKVNPKQKRFIDAILNFPGHIIATMRSKTVAPEKMGLAPEQGKGIEYEFDLLMELDQKHQATVTK.................................... 189
3 -24.400PF08423.9; W1Q8L5_OGAPD/106-359; Rad51  ali follow..  25  11........................QRRSELICLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLCHTLAVTCQ-GEGKCLYIDTEGTFRPAIARRFGLDENETLAYNADHQLQLLHQAASMMTESRFSLLIVDSIMALY-RTDYSGR---GELSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQVDIFNPDPKKPIGGNIVAHSSTTRLYFKRICKIYDSPCLAESETVFALGQGGVIDP............... 254
4 -23.900PF03846.12; SULA_PECAS/8-119; Cell division inhibitor SulA  ali follow..  13  3..............................NIESSSFSANQHAAEPSVATGGIISEIYNADQPIVTHLLLPLLQQLGTQSRWLLWLSPQQRLSRPWVQQSGLPLDKMVQLHHINPLFTVDAMERALLTGNYSAVLC.............................................................................................................................. 109
5 -19.400PF06745.11; O29463_ARCFU/20-274; KaiC  ali follow..  14  1...................IPTGTKLDELFYKVEKEGDRYVRKPL-GGIPHLAVMNITGVPDTGKSLLAEQFAITQAGSGYRVLYVTVESPANFLRSEAMGVDFTKVE-ELRENPKALMETMAYAIKEKKVTNTIIDSITGLYEHKEMM--------------ARQIVRQFFNFMKKYRQTGIFVSQKRSA-----SESAEAAGGLAVAHIVDGTIVLDKKLDVSLYGLPLGSILRIRIDGCRIAPHDSRVWVFEISEIGT. 247
6 -9.980PF07088.9; GVPD1_HALSA/23-536; GvpD gas vesicle protein  ali follow..  12  9..................................................AGETLLINGAPGTGKTLFTIRGLDVLDR-DSDVLYVSTRVDQETVHEMYFADHLDVDVPFEKLDLDSLLEWIQEINAATTQLTIAFDSWELIYEYLAVRHD--------DPPDIKTVTNQLAVLAREENIRLMLVTETAAPSSLEY----IVDGVVTLQVKEDDRGRTRRLRLDKLRGVRIGNRLQPFTLADQVITPVELLDLDRILSGGYN 256
7 -9.220PF09445.8; Q6CRW0_KLULA/100-266; RNA cap guanine-N2 methyltransferase  ali follow..  18  1...................................GNCIVDVFCGGGGNT--LFEKVYGIDSNIDHLYCAYKNAECYNSAVKLKLIDWEESLKKTLVKNLGKTPDCIFASPPWGGQDTYDLEEHLQPSPLSKILVCQNVVLFLPR------------NSDLDQLSSITHDLLGPDEKCKVVYVKDNGYMKGILAFWGRP............................................................... 167
8 -9.070PF01695.15; Y4IQ_RHISN/60-238; IstB-like ATP binding protein  ali follow..  20  37........................................AIAAGDSWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD-----------------LVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQA-----------------TSVLFELISARYERRSIMITANQPFGEWNRVFPDPAMTLA.......................................................... 167
9 -8.820PF04665.10; Q6TUP8_YMTV5/6-246; Poxvirus A32 protein  ali follow..  13  16......................................................IALVGGSGSGKTAYLLSLFNTFVEKYRHIFLFTPVY--NSEYDSYIWPDHVNRVTTYEELDYSLITTKQKIEKTTEMFLLILDDMGDKQIRSSCLLDF-GRHLNTSIILLCQTYKHVPVNGRTSITHFCCCNVSDSDIENML.................................................................. 166
10 -8.310PF13481.4; B2JV40_BURP8/220-401; AAA domain  ali follow..  14  25..............................................DVIPAHAVGAVWGASAAAKSFLVLDLAAALTEEPVPVLLVSLEKHNGRPVPARLHTLTQGFSLLDPRDTDDLCEAIETC--GITGGVVFIDPFALATIGLE-ENSSAD---------MGRAGAALNTLRERTGCTVIAVHHTGK........................................................................ 179

FFAS is supported by the NIH grant R01-GM087218-01
1 1 6 6 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.