current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: PF05634.9; I1MQ97_SOYBN/64-263; APO RNA-binding, from PfamA30U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200
# Score Template Links and tools%idFirst PKGTVWRRKTLPQNEDLPPILPKNKKKPYPIPFKEIKQAGREDRKLAHMGIEKPLEPPKNGLLVPDLVPVAYEVFDAWKLLIEGLAQLLHVIPAHGCSECSEVHVAQTGHHIRDCSGTNGRQRRSSHAWVKGSVNDILVPIESYHLFDPFGRRIKHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPIRMLGRRVIDLast
1 -7.050sp|Q6Y2X3|DJC14_HUMAN DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2 (Range: 512-616)  ali follow..  14  1.................................................................ELSRSVNEFLSKLQDDLKEAMNTMM------CSRCQGKHMDREPKSARYCAECNHPAEEG-DFWAESSMLGLKITYFA......................................................... 77
2 -6.950tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1 (Range: 1-215)  ali follow..  30............LVEVEDALTSSAVKEKLVRFLPRTVSRLPEEETESWIKWLKEILECSHLLTVIKMEEAGDEIVSN--AISYALYKAFSTSEQDKDNWNGQLKLLLEWNQLDLA---NDEIFTNDRRWESADLQEVMFTALI-------------------KDRPKFVRLFLENGLNLRKFLTHDVLTELFSNHFSTL. 192
3 -6.310sp|Q8NFR9|I17RE_HUMAN Interleukin-17 receptor E OS=Homo sapiens GN=IL17RE PE=2 SV=1 (Range: 180-454)  ali follow..  11  51.....................................................................................TVELPYEFLLPC-LCIEAYLQEDTVRRKKCPFQSWPEAYGSDFWKSVHFT---HTQMVMALTLR--------------PLKLEAALCQRHHTLCKDLPNATARESDGWYVLEKVD 155
4 -6.140sp|Q9P2D8|UNC79_HUMAN Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=3 (Range: 382-450)  ali follow..  13  2............................................................................................AVVTC--CCGRHGNRPVRYCKRCHSNHHSNEVGAAA-ETHLYQTSPPPINTREC----------GAEELVCAVEAVI............................... 69
5 -5.980sp|Q9NZQ8|TRPM5_HUMAN Transient receptor potential cation channel subfamily M member 5 OS=Homo sapiens GN=TRPM5 PE=1 SV=1 (Range: 174-435)  ali follow..  10  106.................................EKQFKEKFPSKHFSWEDIVRWTKLLQNITSHQHLLTVYDFEQEGSEEILKALVKACKSHSQEPQDYLDELKLAVAWDRVDIA---KSEIFNGDVEWKSCDLEEVMVDALV-------------------SNKPEFVRLFVDNGADVADFLTYGRLQELYR....... 247
6 -5.940sp|O95391|SLU7_HUMAN Pre-mRNA-splicing factor SLU7 OS=Homo sapiens GN=SLU7 PE=1 SV=2 (Range: 101-160)  ali follow..  13  1.............................................................................WYKRGVKENSIITKYRKGACENC-----GAMTHKKKDC-FERPRRVGAKFTGTNIAPDEHVQPQLM......................................................... 60
7 -5.740tr|Q5TYM6|Q5TYM6_HUMAN Family with sequence similarity 72, member A OS=Homo sapiens GN=FAM72A PE=4 SV=1 (Range: 1-149)  ali follow..  13  28..............................................LRSVSQDGVPGCTVMGGETRSPENAVDFTGRCYFTKICKCKLKDI----ACLKCGNI-VG---HVIVPCSSCLLSCNNG-HFW-------------MFHVYDINRLDSTGVNVLLWGNLPEIEESTDEDVLNISAEECIR.............. 149
8 -5.640sp|Q6L9T8|FA72D_HUMAN Protein FAM72D OS=Homo sapiens GN=FAM72D PE=2 SV=1 (Range: 1-149)  ali follow..  17  27..............................................SRGMKAVLLADTEIDLFSTDIPPTNAVDFTGRCYFTKICKCKLKDI---ACLKCGNI-VG---HVIVPCSSCLLSCNNR-HFW-------------MFHVYDINRLDSTGVNVLLRGNLPEIEESTDEDVLNISAEECIR.............. 149
9 -5.610sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3 (Range: 2441-2829)  ali follow..  11  254..................................GVMQPGQTVVELSADGVCHTSRCTTVLDPLTNFYQINTTSVLCDIHCEANQEYEHPRDLAACCGSCRNVS----------CLFTFPNGTTSLFLPGASWIADCA----RHHCSSTPLGAVLVRSP----SCPPLETECAKVGGSVVPSLE................ 387
10 -5.520sp|Q8NAC3|I17RC_HUMAN Interleukin-17 receptor C OS=Homo sapiens GN=IL17RC PE=1 SV=2 (Range: 194-539)  ali follow..  18  130..............................................................................KNLTGPQIITLNHTDLVPC-LCIQVPLEPDSVRTNIC-PFREDPRAHQNLWQAARLQ--LLTLQSWLLDAP--------------SLPAEAALCWRAPGPLVPPLSWENVTVDKVLEFPLLK 240

FFAS is supported by the NIH grant R01-GM087218-01
1 1 6 5 8 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.