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anford Burnham Prebys Medical Discovery Institute
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Query: PF00543.20; C1DJ64_AZOVD/4-105; Nitrogen regulatory protein P-II, from PfamA30U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIDVAIEDSQLDHVIEAITKAANTGKIGDGKIFVVNLEQAIRIRTGLast
1 -6.270tr|F5H160|F5H160_HUMAN Uncharacterized protein OS=Homo sapiens GN=CPEB2 PE=4 SV=1 (Range: 629-747)  ali follow..  19  56....YDSLNMHSLENSLIDIGTDNLLMLNARSYGRRRGRSSLFPIDDGLLD................................................... 119
2 -5.990tr|C9J7R7|C9J7R7_HUMAN Uncharacterized protein OS=Homo sapiens GN=DNTTIP1 PE=4 SV=1 (Range: 167-296)  ali follow..  23  2........KWDPARLNESTTFVLGSRANKALGMGGTRGHPHLFK---YAADPQDKHWLALLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRK. 110
3 -5.990sp|Q9H147|TDIF1_HUMAN Deoxynucleotidyltransferase terminal-interacting protein 1 OS=Homo sapiens GN=DNTTIP1 PE=1 SV=2 (Range: 200-329)  ali follow..  23  2........KWDPARLNESTTFVLGSRANKALGMGGTRGHPHLFK---YAADPQDKHWLALLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRK. 110
4 -5.510sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sapiens GN=DENND4A PE=1 SV=2 (Range: 1715-1863)  ali follow..  20  50LKSMVKSIKMNDVYGPMSQI------LETLNKCPHFKRQRSLYREILFLLVALGRENIDIDAFDKEYKMAYDRLTPSQ........................ 122
5 -5.440sp|Q96TA2|YMEL1_HUMAN ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2 (Range: 57-205)  ali follow..  40  5..................................................DFLTKLNI-----------------------SIGKGKIFEGYRSMFMEP... 31
6 -5.430sp|Q9UKN7|MYO15_HUMAN Myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2 (Range: 472-574)  ali follow..  19  1..SLIRKFRL--------------FPRPQVKLFGKEK----------LEVPLPPSLDIPLPLGDADEEEDEEELPPVSAVPYGHPFWGFLTPRQRNLQ.... 72
7 -4.690sp|Q5SRE5|NU188_HUMAN Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP188 PE=1 SV=1 (Range: 1393-1498)  ali follow..  14  12MEQLLKTLRYNFLPEALDFVGVHQERTLQCLNAVRTVQSLACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDIQVNL........................ 89
8 -4.640sp|Q5H9R7|PP6R3_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2 (Range: 536-610)  ali follow..  15  7............LQQAFSDYQMQQMTSNFIDQFGNDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCK.......................... 71
9 -4.510sp|Q2M3C7|SPKAP_HUMAN A-kinase anchor protein SPHKAP OS=Homo sapiens GN=SPHKAP PE=1 SV=1 (Range: 892-973)  ali follow..  12  40..........EELADTVVSMATEIAAICLDNSSGKQPWFCAWKRGSEFLM.................................................... 79
10 -4.500sp|Q9P2D8|UNC79_HUMAN Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=3 (Range: 499-712)  ali follow..  16  47VGSLVEKLKPQFVTKWLKTV-MVMCLLPKPMEFARVGGYTQLKEGLNRILCLIPYNVINQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKM......... 153

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.