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anford Burnham Prebys Medical Discovery Institute
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Query: PF03529.11; M3ZUI9_XIPMA/174-274; Otx1 transcription factor, from PfamA30U

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst SPAPISPAPAPANLPDPVAPTSASCMQRSATSSSNGGAASYPVSYSQTAAAYSQGYPASASGSYFSGVECGSYLAPMHSHHHPHQLSPMTGSSMTGHPHHHLast
1 -8.060SP11678A NP_389073.1 406715 Purified-2010-09-29  ali follow..  11  231.............SEDKPVSMNFNAANSNQLTVTATSVKGY----GYAAMKYAEKYALKPNKNYYKDKDCTNFVSQA........................ 293
2 -8.020FR11678A NP_388773.1 392805 Purified-2008-10-20  ali follow..  14  119..............KKPAGFHEGTSIIDYSEAEEEREAFGRAFQYDRLGAQYAEKFWNKRNPAYFSD-NCTNFISQC........................ 183
3 -7.490MA16097A NP_775897.2 400084 Purified-2009-03-27  ali follow..  18  321...SIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTFGRTAVNAQSGVCTPAGGLVTGVL---DYLTSLFYYIPKSALAAVIIMAVAP..... 417
4 -7.200SP17870A ZP_02079267.1 410164 Purified-2010-09-20  ali follow..  14  57....ISEAGGIQWIYGVLAEAEAADNTLEPESGAQSGGSSFEMAY--ISHEGKTGELKGKNINYQTKEDVSRLWDGFSDE----EETPASVSELPA..... 150
5 -7.010SP13201A YP_877587.1 410224 Selected-2009-11-12  ali follow..  206..................GKCPKKKELVNEKRYHRKNAVEYANKYCGVPFGSGNNLSHNKKYRNYTGGDCTNFASQV........................ 266
6 -6.670PC04170B YP_001051222.1 361098 Purified-2006-03-01  ali follow..  14  16......................TACSEAPKEETAVDTAQAQTEAAKSAPVGDTSQNSLDWAGSYEGVLPCAS............................. 65
7 -6.580SP13201B ZP_02995075.1 410455 Selected-2009-11-12  ali follow..  19  199....................LSNSSKDFSDLDERRLNSIEYADKYCGTASNGKYGYKYNKKYRNYNGGDCANFASQI........................ 257
8 -6.390TM1571 TM1571 283428 Purified-2004-02-02  ali follow..  15  7...IIEKKYEKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINKTFTVRRIGSHGVGVE----IFPVHS...................... 79
9 -6.240PJ02625Q NP_101962.1 374713 Purified-2007-04-13  ali follow..  15  39APRPVGSHLVIDADGNFHGSVSGGCVEGAVVSEAVDVIGS--------GKARMLEFGVADETAWQVGLSCGGRI........................... 104
10 -6.070SP16690C YP_001298451.1 409940 Purified-2012-12-14  ali follow..  13  14.................TIIGFNSCAPIPLKIGESENNSTYTVSYLFEHDGCKYRFYDKGNYVYF--TTRGDVTSITNDSTAQRTIT.............. 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.