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Query: PF05634.9; I1MQ97_SOYBN/64-263; APO RNA-binding, from PfamA30U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PKGTVWRRKTLPQNEDLPPILPKNKKKPYPIPFKEIKQAGREDRKLAHMGIEKPLEPPKNGLLVPDLVPVAYEVFDAWKLLIEGLAQLLHVIPAHGCSECSEVHVAQTGHHIRDCSGTNGRQRRSSHAWVKGSVNDILVPIESYHLFDPFGRRIKHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPIRMLGRRVIDLast
1 -6.220HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  34....................................................................DVAGAVESTWSTASTQIKSVVDNVVFPAIDLILAVFF------AKLGTAYFEYRKSGQFEWAAPAI-TLTAPMYLWSI...................................................... 112
2 -3.320PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  10  6...........................................................EKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNC----FGKFAKKVYEVNDGFNIGSGLLAKFIKTLV--PFSI--LYFVGFFFDLILFNLIEFWSGNNPV................................. 110
3 -3.160PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  11  243........................................STPDSNFKKPNLEDRFQPSDSLMTETLARVYVE--KNFSKAKQAYRILSLKYPEKSGFFADQIR................................................................................................ 305
4 -3.120HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  13  87....................................................................................IRQCALEKGVATCGDCLDL---------ERCPTVGEILENNPSALKN..................................................................... 124
5 -2.790PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  71.......................................STVQSGEGEKEVFKPASDDKPKESIQDYEQEYENQLKDILETIIGVEDVSIVVNVDA----TSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEI-------IIKNGDKETPVVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHRV. 220
6 -2.760PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  11  144.............YLRMLKKLGQDLRNPKNICPEDFMAAAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEY---NEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDL-------VNKNANLIRERM.......... 320
7 -2.630PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  11  12.....................................................................IAEYLLYMWQ-----IEDIIRVYGCSLTRIRKEY-------------DYTDEQKEEEEDWFGDLVRVVMQALTELHTQLLASSKFPFYSAEYYRVLPFIVELRGKTKQVADR................... 126
8 -2.370PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  269.STWQGIKPKIHQTPLTRESWSYTGIRPANFPDRRIVAIANILSEHLDNGLFRYI----------RIFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAY--------SYRYTPGGKKLNKPQKLLGKERTSNIFVNVIIPVMLVYARKHNDKALEERLHYIYRNYTPSVTKFMGTRIFGTSIHSARRQQGLYQLFKD... 458
9 -2.320PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  137...................................VVTDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPFVEGLEAL-RVLISEACNHCNDI---PNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHC----GGCMIDAQKMQQ------MKDLHEAGVPVTNYGVFFSWAAWPDALRRALE 306
10 -2.160PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  2...................................TMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTAGCVIAEDHGADSIWLTRDGGNLRAIGNIRVELDGQTVL................................ 152

FFAS is supported by the NIH grant R01-GM087218-01
1 1 9 1 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.