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anford Burnham Prebys Medical Discovery Institute
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Query: PF03529.11; M3ZUI9_XIPMA/174-274; Otx1 transcription factor, from PfamA30U

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SPAPISPAPAPANLPDPVAPTSASCMQRSATSSSNGGAASYPVSYSQTAAAYSQGYPASASGSYFSGVECGSYLAPMHSHHHPHQLSPMTGSSMTGHPHHHLast
1 -8.860sp|Q86WA9|S2611_HUMAN Sodium-independent sulfate anion transporter OS=Homo sapiens GN=SLC26A11 PE=1 SV=2 (Range: 301-600)  ali follow..  18  21...SIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTFGRTAVNAQSGVCTPAGGLVTGVL-SLDYLTSLFYYIPKSALAAVIIMAVAP..... 117
2 -8.180sp|Q1MSJ5|CSPP1_HUMAN Centrosome and spindle pole-associated protein 1 OS=Homo sapiens GN=CSPP1 PE=1 SV=4 (Range: 301-600)  ali follow..  16  236..............................PPLLPPLATNYRTPYDDAYYFYGSRNTFDPSLAYYGGVQPAAYVSPVTHQLAQPVVNTVG........... 300
3 -7.540sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1 (Range: 1051-1302)  ali follow..  20  178APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFN......................................................... 221
4 -7.500sp|Q86WA9|S2611_HUMAN Sodium-independent sulfate anion transporter OS=Homo sapiens GN=SLC26A11 PE=1 SV=2 (Range: 151-450)  ali follow..  18  171...SIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTFGRTAVNAQSGVCTPAGGLVTGVL-SLDYLTSLFYYIPKSALAAVIIMAVAP..... 267
5 -7.170sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2 (Range: 751-1037)  ali follow..  11  218..VQSRDAAWYQLLMAPLSEDQRTALQEVYTLAEHRRTVAEAKKKIEQQGGFTFENKGVLSAFNFGTVPSNN............................. 287
6 -6.920sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2 (Range: 751-1050)  ali follow..  18  238ACDEFLDPIMSTLMCDPVVPSSRVTVDRSTIARHLLSDQTDPFN......................................................... 282
7 -6.850sp|Q12906|ILF3_HUMAN Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3 PE=1 SV=3 (Range: 451-750)  ali follow..  22  216.................MNAGAGYGSYGYGGNSATAGYSQFYSNHSGNASGGGGGGGGGSSGSYYQGDNYNSPVPPKHAQPHGGQQKP............. 293
8 -6.610sp|Q8TC92|ENOX1_HUMAN Ecto-NOX disulfide-thiol exchanger 1 OS=Homo sapiens GN=ENOX1 PE=1 SV=1 (Range: 301-600)  ali follow..  16  251.........................RENNIEKRSQGLKSEKEALLIGIISTFLHVHPFGANIEYL------SYMQQLDSK..................... 300
9 -6.480sp|Q96N23|CL055_HUMAN Uncharacterized protein C12orf55 OS=Homo sapiens GN=C12orf55 PE=2 SV=2 (Range: 1-300)  ali follow..  13  6SPSSSPSDDSTTSGSLPELPPTSTATSRSPPESKGSSRSSLLQWTCPEDS--------LPLAVFYGPLDAKNPLLASCEKEIQELLGFM............ 86
10 -6.470sp|Q6PKC3|TXD11_HUMAN Thioredoxin domain-containing protein 11 OS=Homo sapiens GN=TXNDC11 PE=1 SV=2 (Range: 151-450)  ali follow..  14  2...........SRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIYLYHRSFGPIEYKGPMSAVYI----VRRVMKPLLYIPSQSELLDFLSNY........ 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.