current user: public




PF00015
Query: PF00015.16; MCPC_SALTY/323-517; Methyl-accepting chemotaxis protein (MCP) signalling domain, from PfamA26U

Results of FFAS03 search in SCOP175
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .
# Score Template Links and tools%idFirst RQATGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQLast
1 -5.900d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  19  1...............KGEYGLSNIVHTQGPAIDASGIVKAVMDELYSLACCANMCGAVHASDIAIVGIHXDGAAIMVGGKLSEARRMPELSKVVVPWVPNEPPRWPTLVKYVKQILEAWAANANKHERLIEWVDRIGWERFFELTGLEFTQHLIDD....................................... 161
2 -5.860d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  2.......................IISFLREIIQTGDEVEKIEGIFSG---TLSYI------EFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGL--DVARKVTIVGRISGVEVESPTSF------------PVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLR................ 136
3 -5.810d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  15  56...............................VGKTTAALALARELFGENWRHNFLELNASDE--------RGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDARRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA....... 214
4 -5.680d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  65...RALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIR-TNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREA.............................................................................................. 161
5 -5.500d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}  ali model 3D-neighbors follow..  16  2..........................TTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAI----NIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKRAEEVNAALKAAAEGPLKGIAYTEDEIVLQDIVMDPHSSIVDAKLTKA.................... 150
6 -5.470d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  8................GAVVDKEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVNERILNSCTD---------LMKAIRLLVTTSTSLQKEI-----ESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHTGKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQEC....... 166
7 -5.370d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}  ali model 3D-neighbors follow..  10  8.................................................YMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD.............................................. 107
8 -5.360d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  3.................................................FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE............................................... 101
9 -5.280d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  13  11............................................................LKAAIAGEREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCDLNLISGANETSDMYPAFIRKAQEE--GNSKAVHVFTRAKLAESVHAER............................ 133
10 -5.230d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  54........................LAHYDVLLXEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGL-----LGST---------------------AEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTK........... 191

FFAS is supported by the NIH grant R01-GM087218-01
6 0 9 3 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.