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Query: PF13514.4; D8PEH4_9BACT/1-216; AAA domain, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLARLLLFAFGPFTNKTLDFSVGSSSLHVIYGPNEAGKSSALRAMTDLRFGIPLRSPDDFVHPAGDLRIGGVFIDQTGRPVGLIRRKGRGTTLSGLDVRTEQTDPGFTVDSGLERELTGGLDRQEFEAMFGLNHARLREGGAVLLNGEGDLGSALFEASAGTSGIAALLAALDTDAKKLYSQHGRAQNAVINEARRQLDEQRKAWREAQTKPAEWLast
1 -103.000PF13514.4; D8PEH4_9BACT/1-216; AAA domain  ali  100  1MKLARLLLFAFGPFTNKTLDFSVGSSSLHVIYGPNEAGKSSALRAMTDLRFGIPLRSPDDFVHPAGDLRIGGVFIDQTGRPVGLIRRKGRGTTLSGLDVRTEQTDPGFTVDSGLERELTGGLDRQEFEAMFGLNHARLREGGAVLLNGEGDLGSALFEASAGTSGIAALLAALDTDAKKLYSQHGRAQNAVINEARRQLDEQRKAWREAQTKPAEW 216
2 -20.800PF04310.10; MUKB_ECOLI/2-227; MukB N-terminal  ali follow..  26  4GKFRSLTLINWNGFFARTFDLDE---LVTTLSGGNGAGKSTTMAAFVTALIP.................................................................................................................................................................... 52
3 -18.500PF13175.4; I1YS32_PREI7/1-378; AAA ATPase domain  ali follow..  30  1MKISKLKLKNFRSYRSVEISFE----NLTAFIGRNDIGKSTILEALDIFF...................................................................................................................................................................... 46
4 -18.100PF11398.6; Q6D3T4_PECAS/1-377; Protein of unknown function (DUF2813 topsan)  ali follow..  14  1MHLESIEILGFRGINRLSLTLD----ENNVLIGENAWGKSSLLDALSLLLFTFCETAPGHHLSPRYRSLSPVWVEGNESLYRVFYRLEGEVDESQSVFTWRSFLDADGHPIPL------DNIDELAREIIRLHPVLRLRDARFMRRLRSGTLAATLDNS------NEKLAQQFEQLIRELVQNPQKLTDKELRQGLVAMQQLLEHY.......... 221
5 -16.600PF13555.4; Q0A6A1_ALKEH/19-80; P-loop containing region of AAA domain  ali follow..  26  1..LQRLEVFNWGTFHDRVWSLQ--GGDNSLLTGDIGSGKSTLVDAITTLLVP.................................................................................................................................................................... 49
6 -16.400PF13476.4; Q6C910_YARLI/6-233; AAA domain  ali follow..  10  1....KLSIQGIRSFDNTERETITFNKPLTLIVGQNGSGKTTIIECLRYATTGDLPPHSKGGAFIHDPKICGEKEVLGQVKLAFTNVNGIQMICTRTMQVLVKKNTRQFKTLEGQLMASNNGERTTVSTRCAELD----AQMPLYLGVSKSILDYVIFCHQEESLWPLSEPAVLKKRFDEIFTKALDSIKSLRKEKNVEIKLQTQTTEYLKADKDR. 212
7 -11.200PF02463.17; SMC_BACSU/2-1172; RecF/RecN/SMC N terminal domain  ali follow..  17  2..LKRLDVIGFKSFAERIVDFVKG---VTAVVGPNGSGKSNITDAIRDIIFGSDSRKRLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYRSGES-----------NNQPCRLKDIIDLFSGLGKEAFS----ISQGKVEE----ILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNLNR-----VEDILHELEGQVEPLKIQASIAKDY 214
8 -10.300PF13401.4; B2UJB3_RALPJ/42-210; AAA domain  ali follow..  11  1......................DSQESILLVCGPTGAGKTTLAKFMVENA-----------------------------HSQSHAEMELNAGVIPAIYVQAPASGETKFSWRLFYQRILNQLGDDLDSPKVAYGVDSLSGRLVRPRGTSGNSLAALRTAVERGLRARQVQFMVIDEAAHIFR--DTQRNSKLEVQLDTLKSLVNECG......... 154
9 -9.830PF03266.13; NTPTH_METAC/3-167; NTPase  ali follow..  14  3.............................AVTGSPGVGKSTVVAKTAEKL------------AEKPGFKIGG-----------RTAEIRKEGHREGFSIRDLATGKTGILSHVKGSGPRLGKYHVNLDDLERIGANAVRNALACDLVVIDEIGPMELISQSFVSAVEEVLESLHHSSRHPLAQRFRKGFEVLTVDKGNRDELPEKI.......... 164
10 -8.580PF13086.4; B6HQI4_PENRW/1305-1589; AAA domain  ali follow..  10  1.........SINRAQARAIKSAVDNDAFTLIQGPPGSGKTTITALVGSLL---------SDVLGKQVVKVNGAPVARNALSKKLLLCAPSNAAVDELVMRLKDGVKTTHGRQEKVSVLRLGRSDAINTKVLDVTLEEMVN-ARLNQDPSKGNGVDLQKLYEEHKTTDTSFKELRARLDEA-RAKGLPPPEELEREFDLMKKKRSQLSTSIDKARD. 196

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.