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PF13479
Query: PF13479.1; Q4EAN1_9RICK/15-248; AAA domain, from PfamA26U

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ISTVKMVIFGPYGIGKTSLLKTIDEPTLCLDFEAGLLAVQDWKGDSTEIRTWNEARDIACLIGGPNPALKSDQAYSQRHYEHVSSKYKDFSSEFSKYRCIFVDSITVASRLCLLWAKMQPEAFSERSGKQDMRVAYGLLAQEMMAWLNQFQHIRDKDIIIVGTLGQYLDDCNRPVWLPQCEGTKTASEIPGIVDEVISMVGIKKDDGTEKRSFVCHTLNPWGYPAKDRSGRLSMLast
1 -94.100PF13479.1; Q4EAN1_9RICK/15-248; AAA domain  ali  100  1ISTVKMVIFGPYGIGKTSLLKTIDEPTLCLDFEAGLLAVQDWKGDSTEIRTWNEARDIACLIGGPNPALKSDQAYSQRHYEHVSSKYKDFSSEFSKYRCIFVDSITVASRLCLLWAKMQPEAFSERSGKQDMRVAYGLLAQEMMAWLNQFQHIRDKDIIIVGTLGQYLDDCNRPVWLPQCEGTKTASEIPGIVDEVISMVGIKKDDGTEKRSFVCHTLNPWGYPAKDRSGRLSM 234
2 -17.500PF13481.1; Q7U700_SYNPX/79-275; AAA domain  ali follow..  34.ARTLTLVVALQKVGKSAVVCNI-PKVIIVGTDQPLADWREVMVPNGLMIRTDLDNYRVCDPVVRLYTREHGLHLDEAGIEKITADCEQNPW-----AVLVLDAFLSLIG--------------PLGLDSDSDAAVQPLQN-----LLESIAPFNITTVLLHHSSKSR.................................................................. 196
3 -17.300PF07088.6; GVPD1_HALSA/23-536; GvpD gas vesicle protein  ali follow..  14  9.AGETLLINGAPGTGKTLFTIRGDSDVLYVSTRVDQETVHEMYFAD----SLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWIQEI-NAATTQLTIAFDSWELIYEYLAVRHDDPPDIK------------------TVTNQLAVLAREENIRLMLVTETAAP-------------------SSLEYIVDGVVTLQVKEDDRGRTRRDLRL---------DKLR...... 192
4 -16.400PF06745.8; O29463_ARCFU/20-274; KaiC  ali follow..  12  31.HLAVMNITGVPDTGKSLLAEQFGYRVLYVTVESPANFLYTAMKERSEAMGVD-----FTKVESNVVVIDASESDELRENPKALMETMAYAIKEKKVTNTIIDSITGLYE-----------------------HKEMMARQIVRQFFNFMKKYRQTGIFVSQKRSAQASESAEAAG---------GLAVAHIVDGTIVLDKKLIESRWDVSLYGLPLGSILRTIRGCR...... 229
5 -16.300PF08423.6; Q7Z9J0_PICAN/100-360; Rad51  ali follow..  15  48.......VFGEFRTGKSQLCHTLEGKCLYIDTEGT---FRPIRLVAIARRFGLDENETLDNV-----------YARAYNADHQLQLLHQAASTESRFSLLIVDSIMALYR--------------TDYSGRGELSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQVDGG............................................................... 199
6 -15.800PF13401.1; B2UJB3_RALPJ/42-210; AAA domain  ali follow..  13  3.QESILLVCGPTGAGKTTLAKFMVEPAIYVQAPASGETKFSWRLFYQRILN----PKVAYGVDSLSGRLVRPRGTSGNSLAALRTAVERG--RARQVQFMVIDEAAHIFRDTQR----------------------NSKLEVQLDTLKSLVNECGTQIVLVGSYDLYH.................................................................. 167
7 -15.700PF03205.9; Q9FLE2_ARATH/115-230; Molybdopterin guanine dinucleotide synthesis protein B  ali follow..  14  2....RVIIVGDIDSGKSTLAKMLLNKPTFVDLNVGQSSIT-----TIAAAPIKMLVDPVEGFPLDKALIHYFGLTNPSVVEELARELKEEFSANAESRAMVIDT.................................................................................................................................. 116
8 -14.500PF01443.13; RDRP_TMV/829-1085; Viral (Superfamily 1) RNA helicase  ali follow..  14  1.....VLVDGVPGCGKTKEILSRFDEDLILVPGKQAA---------------EMIRRRANSSGIIVATKDNVKTVDSF-------MMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEI.............................................................................................................. 99
9 -14.200PF00910.17; A7M6L1_9SECO/473-576; RNA helicase  ali follow..  1.....VYAYGESRTGKTLVVDKLITDFQ-FGLGKDTVYSRNPIDQYWSGYRRQPIVSIDDFGAVTCDPSMEAQMIPLVSSAPLPLTMAAIEEKGMMFDSKFIFCSSNL.............................................................................................................................. 104
10 -13.600PF03266.10; NTPTH_METS5/13-164; NTPase  ali follow..  11  1....RLFITGRPGVGKTTLIKGLVSEL-------RELKIAGFYTEEVRERGERTGFLFVVIGDGSCPLASTKPIGKRYFVVDSLTLLPQVKQRLEVADLVIMDEIGPMEKKIGDLWKLIQGVLSSNKPVVASVHRSMNIEGKRYELTPVNRDRVREDIL........................................................................... 152
11 -13.600PF03796.10; Q9KUY7_VIBCH/203-462; DnaB-like helicase C terminal domain  ali follow..  11  22.....IIVAARPSMGKTTFAMNLDKPVLIFSLEMPAEQITKIRTGQLDDEDWARISSTMGILMEKKNMY---DDSSGLTPTEVRSRARRIAREHGGLSLIMVDYLQLM---------------RVPALTDNRTLEIAEISRSLKALAKEL------NVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHPDSPLKGTAEI-----IIGKQRNG.... 239
12 -13.500PF13238.1; A5UL64_METS3/4-148; AAA domain  ali follow..  18  1.....VVLTGIPGSGSTTLLNKALEEVDYVHLNYG------------------DIMTEIAIEEKIVDDRDALRKLSPDVQKEIQEKAAKRIKERSESENVIVDT.................................................................................................................................. 81
13 -13.400PF07931.7; Q98FG2_RHILO/59-238; Chloramphenicol phosphotransferase-like protein  ali follow..  1..ARIVLLNGVGSAGKSSIARALAAPFLHVQMDSFLEMLPDALQDHADGFSYETVRQ--------DGKPAVVIRAGPVGERTLRGMRHAIAAMAGQGNDLIVDDV--------------------------------LCNGELSDCVDLLSAFDFHLVGVMAPLEVLEAREARRADRLPGLARWQYERVHASYDLEVDTSQSTPLECARRIQQRFQ.................. 180
14 -13.300PF13671.1; B2JHT3_BURP8/20-178; AAA domain  ali follow..  12  2.....VFICGHAGTGKTTLAKRLIGPLCLLDKDTLYGVYSAAAIQHFRDPEYRGLFDTAENLRLGIGVIAVGPLSREVRERRLFDHVWLGVPKDAKISVVWVSTSEE--------TARERIAARGNPNDAYKLAHWEDYRQR............................................................................................ 155
15 -12.700PF13521.1; A4CIV1_ROBBH/14-173; AAA domain  ali follow..  10  1....KVVLFGPESTGKTTLARELARHY-----------------------GEPWVPEYAREYLQEKWDRVQQTCAPEDLLPIARGQMRLENIGAREASRLLICDTDLLETKVYSETY---------------------YGGGCDPKLQAAALANDYDLYFLTDIDIPWEADDL--RDKPHERAEMFHYFKTALRENNRRFVILSGGREAR........................ 160
16 -12.600PF07728.9; Q82S33_NITEU/475-632; AAA domain (dynein-related subfamily)  ali follow..  18  1....NLILQGPPGTGKTWLAKRLAFALMGQKDDSKVRAVQFHP-------NLSYEDFVRGWRPTGEGKLSLAD-------GVFMEAIKAASKDPSSKFVVVIEEIN................................................................................................................................ 88
17 -12.500PF09807.4; CC075_HUMAN/1-251; Uncharacterized conserved protein (DUF2348 topsan)  ali follow..  18.QGKLTLLCDAKTDGSFLVHHFLNCKVCFVALIQSFSHYSIERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREAGEARWTYPVLLVDDLSVLLSL---------------------GMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEEN---------DILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVHRDQSFTY 245
18 -12.400PF02283.11; A3JAW9_9ALTE/3-170; Cobinamide kinase / cobinamide phosphate guanyltransferase  ali follow..  18  1.....TLVIGGIRSGKTALAERL---------------ARNTDGEVVYLATATAGDDEMRRRIDRHQRQRSVNWGLSEEPLALASVLALHASASQKAPCILVDCMSLWVSNLL-------------------HAGETVFAWEREEFLTQLAQYPGKLIIVSNEVGLGIIGMDPLARRFGDELGWLNQALAERCDTVVMSV.................................. 161
19 -12.300PF13191.1; B3QEJ6_RHOPT/306-495; AAA ATPase domain  ali follow..  24.TTEWVLISGYSGAGKSSVVSELRKSL----APTNGWFIAGKFDQYKRDIPFATLAQAFRSL----------RQILGLDCGELDQWRTALQEAVGEHGELMVNLVPDLALVI---------GEQLPLPDLPPQESKSLFEAVLARFLAAIARAEHPLVLFL......................................................................... 161
20 -12.200PF09140.6; A5EKW2_BRASB/13-276; ATPase MipZ  ali follow..  12  1....HVVVLGKGGSGKSTTALHIGQRVATIDLDSRQQSFTHYINNRSAWARRTGLHLELPTHYCIKLGQTLQ--IDENEKAEFQQFMEAVCSVEHAFDFIVVDTPGNDSYLMRLAHSMADTLVTPINDSFLDFDVLGTVDPATYAVAEMVRDVRRKRRQVDGAMTDWIVVRNRLSMLGSRNKQLVADGLKELSLRLGFRAIDGFAERVVYREFF.................... 223
21 -11.700PF06414.7; Q8P580_XANCP/35-230; Zeta toxin  ali follow..  12  13.HPKAIILAGQPGSGKGSLARAAGRDVVLIDPDEEVSALRNAHPYTWSGYTHSDASQWADELLQVTIEGKKNLIFDTTNGQWSAELIKDLQSRGYDVEVRAM-AAHKLESEHGVDSRFSQQLDREGYGRYVPESHREVVYTRLPISLDTVHAQTTAPVRIFNRQGAEVYDSRTD............................................................ 196
22 -11.600PF05621.6; Q48383_KLEAE/1-302; Bacterial TniB protein  ali follow..  12  60.RMPNLLLVGPTNNGKSMIVEKFRRPVLVVQMPSEPSVIR--------------YVALLAAMGAPLRPRPRLPEMEQLALALL---------RKVGVRMLVIDELHNVLA--------------------------SVNRREFLNLLRFLGNELRIPLVGVGTRD..................................................................... 190
23 -11.500PF04670.7; Q9VHJ4_DROME/4-230; Gtr1/RagA G protein conserved region  ali follow..  11  1....KVLLMGKSGSGKTSMRSIIARDTTRLGATIDVEHSHVRFLGNLVLNLWDQRDNIFRNVEVLIYVFDVESQEIERDIHYYQSCLEALLQNSPEAKICLVHKMDLVPEGLRESVFTERMEDLIKLSKPGNVTCFETLYKAWSSIVTML.................................................................................... 172
24 -11.400PF07015.6; Q1M9M0_RHIL3/1-231; VirC1 protein  ali follow..  5.....TCCSFKGGAGKTTALMGLGKTIALFEAD-----------ENRPLSKWKENATRRNAWDPLCEIFITDELPLLEV--------AYEEAAGRGFDYCLVETHHGSSELNNTVIASSNLLLIPTMLTPLDADEALATFRYIIELLIGENLAIPAAILRQRVPANRLNSSERLISEMLSTLPLADTPMHE........................................... 178
25 -11.400PF13207.1; B2WP20_PYRTR/6-173; AAA domain  ali follow..  11  2.....IGLYGISGSGKSYLLNHVKTEIAFYDGSEVLAHVTPGGLDSFKLLDAAAKQSALALITQTCLDRGETAVVAGHYMFWNPGVVVAVEKDWQTYTHIVYLDTA-------GVIAQRISADLTRHRVVVDEEGLRSWQNKEKEDLRAICREKGIIFTTLREKPGD................................................................... 168
26 -11.300PF02374.10; ASNA_HUMAN/37-340; Anion-transporting ATPase  ali follow..  12  1...LKWIFVGKGGVGKTTCSCSLAESVLIISTDPAHNISDAFDQKAMEIDPSLGVAELPDEFFEEEAMSAFPGIDEAMSYAEVMRLVKG-----MNFSVVVFDTAPTGHTLRLLNFPTCNMLGLGDMNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLS.................................................................. 218
27 -11.000PF03029.12; O01426_CAEEL/6-251; Conserved hypothetical ATP binding protein  ali follow..  14  1.......VIGAPGAGKSTFCAGLTDPFLTINLDPANDTMA----PDVNITEMITVNDVMDRLGGPNGALKYCIETLGANCNWLLQKIEANHK-----KYLIIDCPGQLELYKSEGELWKVIRFLEKSGDSLYCSDPSKFISVALSTLATMVTMEMPQVNCLSKADLFSED................................................................ 173
28 -11.000PF04310.7; MUKB_ECOLI/1-227; MukB N-terminal  ali follow..  25LDELVTTLSGGNGAGKSTTMAAF---VTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSL---YLLPENSG........................... 227
29 -10.900PF09848.4; A1A222_BIFAA/236-699; Uncharacterized conserved protein (DUF2075 topsan)  ali follow..  11  1..SRLIFVQGVAGTGKTVLLSHLFYRIATEMDINGRINDEDDEDILETDSSYNQIASKLGLQKHFGEVALKPSQFINRFSEKTTSNRAIADKPRGKADVVLVDEAHLLLT--------------------------GDQGYSGKNMLHDLLRRAKVVIAVFDPNQILQTSQ............................................................... 167
30 -10.900PF04665.7; A7XCQ5_9POXV/6-246; Poxvirus A32 protein  ali follow..  12.YPFRLALVGGSGSGKTAYLLSL-RHIFLFTPVYNSEYDSYIWPDHVNKVSTSEELDYALI----------------TTKQKIEKYVKNRGNKNAEMFLLILDDMG-------DKQIKSSCLLDFLNHGRHLNTSIILLCQTYKHVPVNGRTSITHFCCCNVSDSDIEN................................................................. 163
31 -10.800PF00142.13; NIFH1_RHOCA/5-277; 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family  ali follow..  10  2....QIAFYGKGGIGKSTTSQNTLQKILIVGCDPKADSTRLILNTKLQDTVLHLAAEVGSVEDLEVEDVVKIGYKGIKCTEA-VITAINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMALYNNIAKGILKYANSGGVRL-LICNERKTDRELELAEALAAKLGCKMIHFVPRNNVV....................................... 214
32 -10.700PF05729.7; Q9GJD8_RAT/339-510; NACHT domain  ali follow..  2....VVAVLGKAGQGKSHWART-----VSHIWAQGQLP----QYDFVFYVPCQCLDRPGDTYHLRDLLCPPNLQPLAMNDEVIDHIVRQPDR------LLILDAFEEL----------EAQDSLLHGPCGPLSPEPCSLRGLLAGLFQR-KLLRGCTLLLTAR....................................................................... 135
33 -10.600PF07652.9; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  3.KKQLIVLDPHPGAGKTR---KVLPEFIRQAVERRLWTLALAPTRVVAAEMAEALNGLVRYLTPAVIQQHTGKEIVDLMCHATFTMRLLSGGRVPNYNMFIMDEAHFT----------------------------DPSSIAARGYISTKVDMGEASAVFMT........................................................................ 133
34 -10.600PF08477.8; Q8LBR4_ARATH/108-221; Miro-like protein  ali follow..  16  1....KISLLGDPEIGKTSFLAKYVGEEKGINCTDKTLYMGGAR---ISYSIWELEAERSRDQKDSVAILFMFDLTSRCTLNSVISWYQQARKSNQTAIPVMVGT.................................................................................................................................. 111
35 -10.600PF08303.6; Q6CK12_KLULA/389-554; tRNA ligase kinase domain  ali follow..  20  2.....LVTIATIGCGKSTVSLTLPESWGLVVNDN........................................................................................................................................................................................................ 34
36 -10.400PF01591.13; F262_BOVIN/27-250; 6-phosphofructo-2-kinase  ali follow..  11  12.SPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSYDFFR-----HDNEEAMKIRKQCALVALKDVKAYLTE-----ESGQIAVFDATNTTRE............................................................................................................................ 110
37 -10.200PF01695.12; Y4IQ_RHISN/60-238; IstB-like ATP binding protein  ali follow..  13  47.KGANILLFGPPGGGKSHLAAAIGLAL----IENGWRVL------------FTRTTDLVQKLQVARRE----------------LQLESAIAKLDKFDLLILDDLAYVTSVLFELISARYERRSIMITANQPFGEWNRVPAMTLAAVDRLVH.................................................................................. 174
38 -10.200PF05707.7; Q38198_9VIRU/7-180; Zonular occludens toxin (Zot)  ali follow..  14  3.....SLLTGLPGSGKSLRIIQ-----AIRYLMDKGAHVYVCNIDGISVPGTTPWADPHKWQDLPAGSI------------------------------LFVDEAQHFFP--------------------------ARRGGDPVETIKAMSTIRHDGLVLATQQPNYLDTY............................................................... 109
39 -10.100PF01637.13; Q9UZH9_PYRAB/7-205; Archaeal ATPase  ali follow..  13  19.RAELIIIYGRRRIGKTYLLQKF---------------LAEVGGIYLLAEESETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERL---VVVIDEVQYIAKS-------------------------KDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEG................................................................ 145
40 -10.000PF03215.10; RAD17_HUMAN/83-593; Rad17 cell cycle checkpoint protein  ali follow..  10  51.....LLITGPPGCGKTTTLKILSKEHGIQVQEWINPVL--PDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRA--TKYNKLQMLGDDLRTDKKIILVEDLPNQ---------------------------FYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISAPTIMMKFLNRIVTIEANKNGGKITVPDKT.............. 238
41 -9.870PF04548.11; Q8R379_MOUSE/9-219; AIG1 family  ali follow..  11  1...LRIVLVGKTGSGKSATANTILGQKRFV---------------------------------------------SRIAPHAVTQNCQSDSRRWKERDLLVVDTTKVKLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAI-KYMIVLFTRKDDLEDQSLSDFIADKAERAERETQVQELMGLVETLVQNNGG............................. 188
42 -9.870PF04275.9; A4IGD4_DANRE/12-127; Phosphomevalonate kinase  ali follow..  1.......FSGKRKSGKDYVTDLI------------QKRLTAEICCILRLSA--PLKEQYAKDHNLDYEELMGSGQYKESYRADMIHWGELAIKHATQPVWIISDCRRMSDV........................................................................................................................... 102
43 -9.780PF13177.1; B3XQR6_LACRE/12-172; DNA polymerase III, delta subunit  ali follow..  11  22.....YLFVGPGGSGKMSIAQWLSLRLFCLHPQDNEPDLTCAECQRILSGNHPDIVYA-------------APEGRQIKVDEIRHLKAEFSKSEGNKKIFIIKDADKMTN------------------------------GAANSLLKFIEEPGAGVYIFMLTTNKSA.................................................................. 143
44 -9.700PF02367.12; Q9Z7P7_CHLPN/14-136; Uncharacterised P-loop hydrolase UPF0079 topsan  ali follow..  14  14.PGAVLLLFGDYGAGKTEFVRGIASPSFSILHVYGNEPKRLCHYDLYRIDQKNQEYIFQDAEEDDVLCIEWADRLPKPRFCDTINIYITMQTNMER.......................................................................................................................................... 121
45 -9.680PF06564.7; A6TFD7_KLEP7/1-243; YhjQ protein  ali follow..  10  4.....LGLQGRGGTGVTSITAALGESVLAIDASPDNMLRFFFNTDIHHQDGWARYTQHIDLLPFGQLSAGERENVDQLQ-PTLGAIAEAVQQLQGQYRWLLLDLPAGYSPLTRELLTLCDHQQPLPANGDILINDLRVGSQLQEDLYQLWLESQPRILPVTIHRDEAMAE................................................................ 205
46 -9.650PF09818.4; Q2C6W1_9GAMM/1-438; Predicted ATPase of the ABC class  ali follow..  16  232IPEGITLIVGGGFHGKSTLLSAIERSV--IPGDGREYVVTNYNAAKIRAEDGRCVHDLSPYISNLPMGKDTTAFTSQNASGSTSQASWLQESIEAGAEALLIDEDTSASNFMIRDERMQALICKEDEP------------TPLVDRIALLRDQHDISVMLVMGG---------------------SGDYLDVADTVIQMHNYEAVDVTKKAREVVASHPTRR............ 424
47 -9.370PF10236.4; Q755C9_ASHGO/113-434; Mitochondrial ribosomal death-associated protein 3  ali follow..  11  18.EHQRVILTGQPGVGKSTLLAQAEKGSVIINISHPELFLNGRNDTTGEQEQYTQPMYLKKLLTKILKSNKKSVLSSVALTQEYKFPVADTRESASKRVTRLVPGKNTLYDLLSMKTTPAA------------------RGMLFQAVIDELVAQSAVPVYLT......................................................................... 168
48 -9.340PF13555.1; Q0A6A1_ALHEH/19-80; P-loop containing region of AAA domain  ali follow..  26  21PGGDNSLLTGDIGSGKSTLVDAI................................................................................................................................................................................................................... 43
49 -9.270PF13086.1; B6HQI4_PENCW/1305-1589; AAA domain  ali follow..  12  20.....TLIQGPPGSGKTKTITALVGSLLSDVLGKQVVKVNGAPVAR------NALSKKLLLCAPSNAAVD-------ELVMRLKDGVKTTHGRQEKVSVLRLGRSDAINTKVLDVTLEEMNARLNQDPSKGNGVDLQKLYEEHKTTDTSFKELRARLDEARAKGLPPPEELEREFDLMKKKRSQLSTSIDKARDQNHTLARNADMHKRRIQEQIINESH............... 221
50 -9.220PF09439.5; SRPB_YEAST/36-221; Signal recognition particle receptor beta subunit  ali follow..  17  2.YQPSIIIAGPQNSGKTSLLTLLTTD---------------------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL-------------------------TTTAEFLVDILSESSCENGIDILIACNKSELFTARPP---------SKIKDALESEIQKV...................................... 143
51 -9.150PF14516; B0C1H3.1/102-434; AAA-like domain  ali follow..  18  30.PGTLIRIKAAKGMGKTSLVNRILKTTLYLDFQWASQASINNLERFLR----FQMGRQLGLDNQLDDYWDTELLTSIDNCSQYFEDYLLPNIEAP---VLALDSVEQIFP............................................................................................................................ 142
52 -9.080PF08433.5; O46079_DROME/1-293; Chromatin associated protein KTI12  ali follow..  10  4.....VVITGLPASGKSTRARQLRDKVHLISEN-----------------------EAVPKAGFGKNSHTGDSQKEKVVRSDLKSEASRHLNQE---DLVILDAGNYIKGY........................................................................................................................... 90
53 -9.050PF04851.10; Q893B7_CLOTE/244-395; Type III restriction enzyme, res subunit  ali follow..  11  25....RGLLISATGTGKTYLSAFEPKRALFI--------VHREQIAKQALNSFMNVFGDTRSMG-SGTSKDVDKDFIFCTIQTLSKEEVLQYFDKNEFDYIIIDEVHKAGANSYQKIVN.................................................................................................................... 136

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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]