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Query: PF09484.8; F4BUW9_METCG/1-610; CRISPR-associated protein TM1802 (cas_TM1802), from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIDAVSRIGNYIQMTYGGDNLLSTFIENPNSNGKYKFVLIVILKETEGNYLFSHIAFDEFSDYPRYLYKKGPSNGTDATPTSKVAGDIWKTFQNRFLKWFQNYETYDISKEEKESLKKMNMALRDQKETILAELNEKFSQKRSDEYAIITLGIERGGNIRYLGDLQAFKNILLRKGKDKYYLKKSQGESLGKDSACSVCRGTKDEVYGFAIPWTFHTFDKPGFIAGGFKVNESWKNTPVCFDCAKHLEVGKKYIEENLDFGFYGFRYLLVPKLAFGRDDNETLKEVLGILGNKDQKRNLKINREVKNRITSDEEEVLEFVKDQKDFFSNSLIFYKKEQSSYRILLLIDGILPSRLKALFDAKEKVDERFKIYNDSILSEDQREKNHLEFNFGVLRRFFPSESKNRTFDKIFLEVVDKIFVGDQISYYLLMGFIMSKVREAFIKGYPTNITTLNGFLLLHYIEELNLFKANKVEMKDMNEQGNGVLRIEELESLPLEQRVERFFEANKSFFNTDAKKATFLEGALTQMLLNIQWNDKKATPFRSKLHGLKMNEALIKRLLPEIQNKLEEYGKNYYKDLESLIANHFVLAGVNWKEVDDELSFYFVLGMDMHLast
1 -168.000PF09484.8; F4BUW9_METCG/1-610; CRISPR-associated protein TM1802 (cas_TM1802)  ali  100  1MIDAVSRIGNYIQMTYGGDNLLSTFIENPNSNGKYKFVLIVILKETEGNYLFSHIAFDEFSDYPRYLYKKGPSNGTDATPTSKVAGDIWKTFQNRFLKWFQNYETYDISKEEKESLKKMNMALRDQKETILAELNEKFSQKRSDEYAIITLGIERGGNIRYLGDLQAFKNILLRKGKDKYYLKKSQGESLGKDSACSVCRGTKDEVYGFAIPWTFHTFDKPGFIAGGFKVNESWKNTPVCFDCAKHLEVGKKYIEENLDFGFYGFRYLLVPKLAFGRDDNETLKEVLGILGNKDQKRNLKINREVKNRITSDEEEVLEFVKDQKDFFSNSLIFYKKEQSSYRILLLIDGILPSRLKALFDAKEKVDERFKIYNDSILSEDQREKNHLEFNFGVLRRFFPSESKNRTFDKIFLEVVDKIFVGDQISYYLLMGFIMSKVREAFIKGYPTNITTLNGFLLLHYIEELNLFKANKVEMKDMNEQGNGVLRIEELESLPLEQRVERFFEANKSFFNTDAKKATFLEGALTQMLLNIQWNDKKATPFRSKLHGLKMNEALIKRLLPEIQNKLEEYGKNYYKDLESLIANHFVLAGVNWKEVDDELSFYFVLGMDMH 610
2 -19.200PF09709.8; F4KKD3_PORAD/6-601; CRISPR-associated protein (Cas_Csd1)  ali follow..  1....LYNYYEAMRKAHR-------IATPGLEVKPIRWVIVIREDGSFVRLKNLKDPSDKKSKGQDYLVPAGLKRSGKCPPAQPFWDNRKSPCTDRLEDFKRLMAEIAELYPDNASFQAVCRFYEH--LGDEMPLPEDAHTERILASDWMTFQLQGDTE--LLATQDDAHDYTAQAYNTE-----------ENLGTCLITGEKKSLAPGSQAGATIASFNDPAYLSYGKKQGE---NAPISKYASFAHTTALNDLLRNEQTRYTLGDISYVKDDDAQEPSDTDDEQPKRKGKSKKKAPNPTRETYKVLEQFKAIRGNRGQGQHWEDERQF-YVLGLTAGGRITIKYWQQGTVSEIFDRVYQHLVDMN--------RRDGNVDEENPPLRSLYGIVKSVSSPSKSSTFAMNLVQSIVESVLNGTPYPMT-LQQACINRITK--------------------------------------ERAVSELRAAILKGCINRKARIYKHLKELDMALDKQNDNIAYLAGRLFAVLEQIQQAKGVNATIRDRFYTSASTRGRLIALSNHHLSKLRKEKPGLAVNLEKLLGEIFALIPAE-TFSLDE----FAVGYYHQ 591
3 -8.870PF12773.5; A4H9B2_LEIBR/373-437; Double zinc ribbon  ali follow..  13  5.........................................................................................................................................................................................GEDIPRGSCFCGTCGQ------------PVQGAPSHRRTPGGTNEGVSTARRLVCPACEALSDADGNFCDN.................................................................................................................................................................................................................................................................................................................................................................. 63
4 -8.100PF17032.3; J9D3W3_EDHAE/30-102; zinc-ribbon family  ali follow..  17  2..................................................................................................................................................................................................LCDKCGNRINAVYRRNDYY--ISKGTPYLSCNYCEASFGGHGTNICEDCRTAVPSQFKYCPH.................................................................................................................................................................................................................................................................................................................................................................. 71
5 -7.920PF09947.7; Q6LYM8_METMP/1-67; Uncharacterized protein conserved in archaea (DUF2180 topsan)  ali follow..  16  2..................................................................................................................................................................................KCYLCKLEGKDTDAVASCIVCGM---VCMDHVVREEIDHWEGGYPFPATKLKKTIPRM--LCKPCYNALM.......................................................................................................................................................................................................................................................................................................................................................................... 67
6 -7.910PF09779.7; G4UUQ1_NEUT9/10-137; Ima1 N-terminal domain  ali follow..  11  33...........................................................................................................................................................DGNGDITDPPVATEYEASPAKFATTRATSPTVGSSSASVFCNKCLANQDKLRAV---LAQYLPDPDDSEYEERCRRLQERLYPMCAECEPRV........................................................................................................................................................................................................................................................................................................................................................................... 128
7 -7.630PF14537.4; D4H4F3_DENA2/139-220; Cytochrome c3  ali follow..  11  15.....................................................................................................................................................................................IALPEFASEVSNVTCLGCHGELKALQKKTESAEHKDMNPHKSHLGDIACTVCHHIHTYCVNCH.............................................................................................................................................................................................................................................................................................................................................................................. 81
8 -7.620PF14353.4; R6EE02_9BACE/9-141; CpXC protein  ali follow..  14  2..................................................................................................................................................................................................TCSQCGKEHDI-----QTYPNINVKESPELKARIKDGTLFL---TCPDCGQVNLAPYQTLYHDPDEKVM---IWLTPNSMSFSERALVDSHIQAIAGQLAEDKSGELLRGYALRRVKEAGELIEKVNIFDAGLDDIAM...................................................................................................................................................................................................................................................................................... 129
9 -7.500PF01363.19; A7TSD4_VANPO/12-89; FYVE zinc finger  ali follow..  12  4...........................................................................................................................................................................QPDEDIRNCLNCSTKFSFLIRKHHCRSCGG---IFCASCSDYFVRYDTDRVKVVKRWPAEEEYAPYRTCDSCYKNLL.......................................................................................................................................................................................................................................................................................................................................................................... 77
10 -7.460PF09657.8; Q8REC6_FUSNN/12-500; CRISPR-associated protein Csx8 (Cas_Csx8)  ali follow..  12  66..............................................................................................................SKYSEDTLAHKKLENQLKHTKEFTSEIIKSIKENMSANTVLKKVFSKTKFDGTNKDEVLKLLDENRHSII--KETFRNKKDLYDNYCQTSRLLEKGDNSPCRLKGYYFDPNRKSKATGYNFVSSSVDYFDDEIFDFIPFAFTGSSFE---------IFL--------NDNLDLEILENMNYKLREYFSEEKENETERLKSLKQEKAIKEKKNEET---------EGNQNSVPLKKLFLNILQKKVDYIKYGMEIIYKNRDKEYFETWYLRNESIK----VLKEIEDFSKLDIRIKITDKYYFNLLDEVFSA--LNLSLLTNSILYLLKDRESFIKIDTTRENLSKLFKYNYAINELI------------------------------KVNQIIRNGGKEMDENLKKSIKACSIAVVKKFIKENSLNKLASYRQKL--SSVVAKNHKRIL-DVLTQLSVYSGVYFSFAFDYIENQ----------QNEDIIHYFILEL... 489

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.