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Query: PF07858.10; Q8XW85_RALSO/2-128; Limonene-1,2-epoxide hydrolase catalytic domain, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst PTPLETVSHFCAAFVEDGGRPAVRRWFTPDTRWVNEGVSATTGVDEAIAMIDGLETSMGISTVHFDVIAIAADGSRVLTERVDRFERADGAEIGRVTLMGIFKVEGEKIVEWRDYFDVNALQAFNAGLast
1 -75.300PF07858.10; Q8XW85_RALSO/2-128; Limonene-1,2-epoxide hydrolase catalytic domain  ali  100  1PTPLETVSHFCAAFVEDGGRPAVRRWFTPDTRWVNEGVSATTGVDEAIAMIDGLETSMGISTVHFDVIAIAADGSRVLTERVDRFERADGAEIGRVTLMGIFKVEGEKIVEWRDYFDVNALQAFNAG 127
2 -42.100PF03284.11; C5AHF3_BURGB/12-165; Phenazine biosynthesis protein A/B  ali follow..  11  11.HNRKIVEQYMHTRGEAR--LKRHLLFTEDGVGGLWTTDSIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDPNWFWVECRGEGAIIFPGYPYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGI 142
3 -36.900PF16247.3; Q8YWM3_NOSS1/1-129; Domain of unknown function (DUF4904 topsan)  ali follow..  18  5.KYHEMLKTYFRSF-ETGDFSQVQFSCHLEFLSPISG-NTFKGIEEVISFLKGVTTRVS----EVNIMSTTVEYPRASGVWQ-----MRTTKGILYTLHNFFRLDEEGIVYIWPMFDPKAVIENPDA 119
4 -25.500PF07366.10; Q82M76_STRAW/10-135; SnoaL-like polyketide cyclase  ali follow..  13  1....ALLRTAYQRL-QSGDLDACVELLTENFIANVPGTPPLHGREIWRLGAQAMLEGFP--DLQVDVEDMFSVHDKVAVRVHFRGTVAATHRPVGFRSIELYRIEGDRIAEEWVAPDLMSLMQQI.. 126
5 -23.600PF14534.4; D5SSM1_PLAL2/48-156; Domain of unknown function (DUF4440 topsan)  ali follow..  12  2...KASAAGFERAF-NAGDAKAIAAQFTELAETVDEEGNILEGRANIESRFAELFKDYPKAQIAVTLTSLLISPDVAVEDGYSMTTLDPSQPGSRSPYAVVHLKRDGK................... 106
6 -16.700PF08332.8; F8WHB5_MOUSE/57-184; Calcium/calmodulin dependent protein kinase II association domain  ali follow..  6...IKVTEQLIEAI-SNGDFESYTKMCDPGMTAFEPEALGVEGLDFHRFYFENLWSRNKPVHTTILNPHIHLMGDESACRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGA........ 127
7 -14.600PF12680.5; A2SP57_METPP/26-134; SnoaL-like domain  ali follow..  14  1......VSGYALGW-DRHDVNLLLSVFHEDAEYLMPGLGDFRGADEIRRVYDQVVVAIPETWHFTTNLLLKVDGDRATGISEVNMHGTEASGRPIITYLDEFQRRAGR---WA.............. 107
8 -14.200PF13474.4; Q12PU2_SHEDO/77-185; SnoaL-like domain  ali follow..  2...NSLLNQLHESA-MSADWDTYFDLYHPDAAFIGTDATERWNMVHFRRYASPTQG-----RYDLQARHLLQIEDVVVFDEQ-----LYSPEYGISRGTGALVNTTKGWKIAQYHLSF......... 106
9 -13.900PF07107.9; Q0DSM5_ORYSJ/106-228; Wound-induced protein WI12  ali follow..  20  7.......................................................ADHGESRFLFSPRSVDAFGSTVIAE--------GTDDTRQLYWVHAWTVGDGVITQLREYFNTDLTVTRLS. 70
10 -13.800PF12707.5; Q46KI2_PROMT/2-129; Protein of unknown function (DUF3804 topsan)  ali follow..  11  1.SSKEEILSILEAFASTRMGSFFLDNATADFLFIRPS-GNPLDAKGFENMWSSGDLVLESAEITKVHKFELLGSNAAICVFTLGSKFTYKGTQNDPTVTSIFKKIDEK---WK.............. 111
11 -13.500PF13577.4; E3J7S1_FRASU/26-166; SnoaL-like domain  ali follow..  10  10...RDLLAHYGYTA-DTCKDEEFVELYTEDGRIKVAASALYETKDGVRDFITHPKGHHSPALYGKSMHLQGNQGDEAVARGYQVAIVADDQGTRVLSAGNNLRKVDGLIRERR.............. 141
12 -13.400PF11533.6; A8GA93_SERP5/4-128; Protein of unknown function (DUF3225 topsan)  ali follow..  12  6PAVLAEVNAAFYRYEQANDIDVLDELFWHDGTVRYGATENLYGIEQIRDFRQQRPSKGLDRVLENTVITTYGDDMAVAS................................................ 88
13 -13.100PF10184.7; Q9SA31_ARATH/87-199; Uncharacterized conserved protein (DUF2358 topsan)  ali follow..  13  2....VAVRTLREDLPLLFTRDLNYDIYRDDITFVDP-MNTFTGMDNYKIIFWALRFHFRDISLEIFRVWQPSENMILIRWNLKGVPRVPWEAKGEFQGTSRYKLRNGKIYE................ 112
14 -10.700PF05223.9; Q8Y9T2_LISMO/44-163; NTF2-like N-terminal transpeptidase domain  ali follow..  1.NALAAAETFTSNI-AKEKYDKLGGSVSSESL-----KKVEFTKKEMEDKYQAVYDGIGAKNIKVKNLKSVDKENKFNLTYELEMRTSLGKLATQKYKTTISKQDDDWKIDWKP............. 109
15 -9.430PF12870.5; Q7VHU7_HELHP/20-130; Domain of unknown function (DUF4878 topsan)  ali follow..  6NSPKDVAIAFTKDAYK-GNGDRLIKYIHLPQMETDATKEIVKGKFKTAAAKAESKAEAFGGLDEVKAIPECIEEQRAIIK............................................... 84
16 -9.240PF12893.5; Q2KDJ8_RHIEC/2-116; Putative lumazine-binding  ali follow..  18  7...EQTVHLYVEGMAF-ANAAALKKAFHPKSSIIGYYQNAVETRDEFIAAILAEEPAPPGTQPFMDIQNVDVEGDAASVK............................................... 84

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 5 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.