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Query: PF06251.9; F7YJH4_VIBA7/59-287; Capsule biosynthesis GfcC, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASVVEVRSADTPALSLSFASVPRVDELVINALNASAQLPADIDWLSSALFDVSSPYQKKQQVLLAITHQESLAASAHKKRWRQLKEQLRARTFAQRIFTPLDPDITRITASQNPKLQGQWLLSLNALPTTVSVLGNVKQAGDMAWKPRTDAGHYVRSAGLAETDISQVWVIQPDGHASLHDIAYWNHDFQDIAPGATLYVPFPIETTSLYPQYSLHNVNDIVVELLRNQLast
1 -93.900PF06251.9; F7YJH4_VIBA7/59-287; Capsule biosynthesis GfcC  ali  100  1ASVVEVRSADTPALSLSFASVPRVDELVINALNASAQLPADIDWLSSALFDVSSPYQKKQQVLLAITHQESLAASAHKKRWRQLKEQLRARTFAQRIFTPLDPDITRITASQNPKLQGQWLLSLNALPTTVSVLGNVKQAGDMAWKPRTDAGHYVRSAGLAETDISQVWVIQPDGHASLHDIAYWNHDFQDIAPGATLYVPFPIETTSLYPQYSLHNVNDIVVELLRNQ 229
2 -12.900PF10531.7; A0LNJ0_SYNFM/239-294; SLBB domain  ali follow..  23  1.................................................................................................................................TIYVDGAVKKPGNYPISQSTTVQEAIVMAGGFSADEGNIKLVRPSGKREVVK................................................ 56
3 -9.380PF08021.9; YQJH_ECOLI/21-133; Siderophore-interacting FAD-binding domain  ali follow..  12  1............................................................................TVLRVERISAGFQRIVLGGEALDGF----------TSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAIDFFIHDGGVA-----SGW---AMQAQPGDKLTV............................. 106
4 -7.040PF11699.6; Q6CVA1_KLULA/464-550; Mif2/CENP-C like  ali follow..  14  32.................................................................................................................................................................SHNAFINFFV--KGVVEIS-----GDNKFVCTTGSSFQVPAFN-------TYGFLNKGMTEAQLFFVQ 87
5 -6.600PF06249.10; Q8Y7T4_LISMO/4-147; Ethanolamine utilisation protein EutQ  ali follow..  14  2............................................................................SKELIEQLVKQVVLEKMGQSSK-HVDPSGILSVKLPVVKVSEEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMK--TTFDWFLDYDEVDYVI--EGRLDVV-----DGRTVSAGPGEIIFIP............................ 118
6 -6.560PF16576.3; Q2Y961_NITMU/112-334; Barrel-sandwich domain of CusB or HlyD membrane-fusion  ali follow..  10  3SRTVRAVATVQADERRLYVVAPRFEGWIERLHVNTTGQMVRKGDPLMDVYSPDLITAQHEYLIADVEDGGLEVRAGMERLAESALQRLRNWDISAADLKTLQQEVLEKRAIQGQRFMAGEILYQIADLSRVWVLADVFEQDLATIQPGQAAAIRVEAYPDKVFPGEVTFIVNPETRTAKVRMELPNPQE-LLKPA.................................. 220
7 -6.100PF14326.4; E8U5N8_DEIML/57-138; Domain of unknown function (DUF4384 topsan)  ali follow..  1...............................................................................................................................................NYRIGDRIRIYTS-----TDRDAYVYLVNPDGSIDQILPNHLQSGGNFVKANTVKAFPSARDQFVFNVAGPYG--TNKVLALASTR 81
8 -6.040PF08007.10; Q9CP87_PASMU/26-337; Cupin superfamily protein  ali follow..  18  28...............................................................................EPDDIIELAQQEDVTSRLIKQFSEDNWQLARSP-KNLPAQWSVLVQNLEQWSPELGQLWHA--FGFIPQWQRDDIMVSYAPAGGDEYDVFLVQGYGH------RRWQILDEVMAPGDILYVP--LTFSFGLRYPNVADLFDNINKGMCQA 217
9 -6.000PF07395.9; Q88D85_PSEPK/35-298; Mig-14  ali follow..  59...........................AEIILPAASDAAAPLRHTMRYLSELNQGRFSGLKAQKEQLAMARAPEDLSKKFRYNQRRELRLLE------------------------EAGGVVRPISDFSAQEIASMYCDLFLRRWGFPATGAERMADVLERLRELLIGSVLLLDGKPIAIQLVYVDPETKAFSPGSVLS.............................. 222
10 -5.820PF09299.9; K9W0W6_9CYAN/384-448; Mu transposase, C-terminal  ali follow..  15  1.......................................................................................................................DICLMKQTNRSIYREGYIRFENLMYQGE--HLAGYAGELRYDPRDITSVLVYQPQKD..................................................... 58

FFAS is supported by the NIH grant R01-GM087218-01
8 2 9 8 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.