current user: public


Query: PF03354.10; Q9XJ75_9CAUD/100-588; Phage Terminase, from PfamA26U

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .
# Score Template Links and tools%idFirst PWQKFILCMLFGWRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESFGLSNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQKEPFKSLANETELGLHSDQVIMKANNNILRAISAESGQYDSFHFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWLLADSNSFLDLKDIENAVIDDFDIKGKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIPWQQAGSIEAKIEQDGINYRDLETKGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYDAMMVNKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRRDDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFELast
1 -168.000PF03354.10; Q9XJ75_9CAUD/100-588; Phage Terminase  ali  100  1PWQKFILCMLFGWRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESFGLSNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQKEPFKSLANETELGLHSDQVIMKANNNILRAISAESGQYDSFHFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWLLADSNSFLDLKDIENAVIDDFDIKGKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIPWQQAGSIEAKIEQDGINYRDLETKGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYDAMMVNKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRRDDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFE 489
2 -40.000PF03237.10; Q66BB2_YERPS/164-571; Terminase-like family  ali follow..  10  2..........................FLKSRQVGATYFFSWEALLDALD-----TGRNQMFVSASKAQAHQFKNYIVAAARQVD-------------VDLRGEVIIL-PNGAEMHFLGTNASTAQGRPGNLYLDEYFWIPGFQKLRRAASGMASQKRYRSTYFSTPSSTS-----HEAYPFWAGTLFNKGKAKDKRIEIDVSYPRLAGGRLCEDKQYRQIVTIEDALKGGCDLFDIDELRNEN----SDQDFENLFMCGFIDDNASTFKLAEMQRCMVDSWEKWGDRPVWIGYDPASTGDSAGCAVIAPPVVAGGKFRVLERHQW-------------------------------------KGMDFADQASNIKKITERYN--VTYIGIDDTGLGRSVTQLVRQFFPAVNAIHYSLEMKADLIYKAKNIIHGGRLEFAGCIDIATAFMSIRKTMTATGRNASRSEGVSHGDVAWAIMHALF....... 406
3 -13.800PF04466.8; Q9AZ91_9CAUD/28-407; Phage terminase large subunit  ali follow..  9  2.....................HLTEVWYGGASSGKSHGVV-QKVVLKSLQHWNVPRKVLWLRKVDRTVKNSIFTDVTECLSGWNILQYCHVNRSDKTIVLPNGAIF------LFQGMDDPEKIKSIKGLSDVVMEEASEFNHNDYTQLTLRLREPKHKQRQIFCMF------NPVSKLNWTYQTWFDPSADYDRSRVAIHQSTYKD-------------NRFLD-----EDNIRTIEELKNT-----NPAYYKIYTLGEFATLDKLVFPYFET-KRLNPRDPKLLALNDYFGLDYGFINDPSAFMHIKLDMRNKTLYVMDEFV------------------------------------------KKGLLNNQLAQVIKDMGYSKEVITADS-AEKKSIAEMKRDGIYRIRPALKGPDSIIQGIQFLQKWVVDDRCVKTIEELQNYTYVK---KKTDEYTNRPIDAYNHCIDAIRYAVE.......... 379
4 -12.300PF05127.9; A2EVG1_TRIVA/302-494; Helicase  ali follow..  8  2..........................ITAARGRGKSAAIGLSLAAAL-----ALGYSNIFVTAPSIANLTALFEFVIVGLTALGFREGESEDFEVVKSNPTSSKERPYVTRVNVHLSHGRRQTVQYVRPNILAIDEAAAIPLPIVRQLMGP-------TTLFSSTVDGYEGTG-----RALSLKLFKEFQRTMKSRFTQT--------TLTKPIRYAEGDP............................................................................................................................................................................................................................................................................ 181
5 -11.600PF05876.7; Q8ZQH1_SALTY/36-646; Phage terminase large subunit (GpA)  ali follow..  7  19PYMNEAINTL-------SKREYDAVIFAGPARTGKTLGLIDGWIVYGIV----CDPADMLVVQMTETKAREHSKTLARTFHHSPEVRKRLSPSRNDNNVHDKM-----RDGSFLKIGWPSITVFSSSDYKRVALTDYDRFEGDGFSLASKRTTTFMSAGMTLAESSPGREITDVKWRRSSPHEAP----------------TGILSLYNRGDRRRWYWPCPHCGDWFQPAMENMVGYRDNPDLMAASEAARIQCPHCRALIQPEQKRGLNNRGVWLKEGQFINKDGRSRIASFWMEGVYKLLTAEEEYERTGSEETLKAVINTDWGLPYLPRISLDQRKAETLIARAE-VPDGVRFLVAT----VD--------VQGGKKRRFVVQVVGYGSHGERWIVDR-SLRCDESGEAMQINPGAYPEDWHLLITDVLERAWPLVGHPEQEMSVLCMGVDSGGEDGVTDN......................... 475
6 -9.700PF02500.10; Q997C8_TUHV1/42-302; Probable DNA packing protein, N-terminus  ali follow..  11  118PFQKNLLMHVLVFLSAASLDLFKQTVFLVPRRHGKTWFTVPIICFLLKN-----QGISIGYVAHQKHVSQFVLKEVEFRCRR---------FGRTHTVENKDNVISIDHPIAKSTALFASCYNTNSIR......................................................................................................................................................................................................................................................................................................................................................................... 260
7 -9.380PF07652.9; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  12  2...................KKKQLIVLDPHPGAGKTR-----KVLPEFIRQAVERRLWTLALAPTRVVAAEMAEALNGL--------PVRYLTPAVIQQHTGKEIVDLMCHATFTMRLLSGGRVPNYN--MFIMDEAHFTDPSSIAARGYISTKVDMGEASAVFMTA.................................................................................................................................................................................................................................................................................................................................. 134
8 -9.360PF04851.10; Q893B7_CLOTE/244-395; Type III restriction enzyme, res subunit  ali follow..  14  6KMQVEAIQGLERLRENGQDR----GLLISATGTGKTYLSAFEL--------RNYNPKRALFIVHREQIAKQALNSFMNVFGDTRSMGILSGTSKDVDKDFIFCTIQTLSKEEVLQYFDKN---------DYIIIDEVHKAGANSYQKIVN-------NPKFLLGMTATPER.............................................................................................................................................................................................................................................................................................................................. 152
9 -6.390PF05894.7; Q9FZV9_BPGA1/1-335; Podovirus DNA encapsidation protein (Gp16)  ali follow..  13  21.........................CVIGARGVGKSFAIKSKLVDDFL-----KNGRQFVYLRMYKTEISKNKSKFFDDIAINYPNTKFEVKGNDFYINGKL---------GYAIPLSGALKSSSYPNVYTIFFDEFVREKDLNVMDTVFRHRVNDPAVRVICACNAVTLVNPYFNDSIVVQIVKNEDYANARRDNRFGKLISGTAYEEMSIDNKFTQDS............................................................................................................................................................................................................................................................................. 231
10 -6.280PF00910.17; A7M6L1_9SECO/473-576; RNA helicase  ali follow..  14  1........................VYAYGESRTGKTLVVDKLI----FQNHFGLGKDTVYSRNPIDQQPIVSIDDFGAVTCDPSMEAQMIPLVSSAPLPLTMAAIEEKGMDSKFIFCSSN................................................................................................................................................................................................................................................................................................................................................................................. 103
FFAS is supported by the NIH grant R01-GM087218-01
4 7 3 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
 Locations of visitors to this page
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.