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Query: PF03354.13; Q2FWT4_STAA8/71-548; Phage Terminase, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHELast
1 -164.000PF03354.13; Q2FWT4_STAA8/71-548; Phage Terminase  ali  100  1EFQKFIVGSLYGWRRGQYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITAFTEARMHE 478
2 -22.100PF03237.13; F0LQ02_VIBFN/176-584; Terminase-like family  ali follow..  11  2.........................ILKSRQIGATYYFAGEALEQAI-----LTGDNQIFLSASRAQAEVFRRYIVALAKEFLDLE---------LSGNPMTLSNGAELHFLSTNGKTAQSYHGHV-YVDEYFWIGKFDELNKVASAMATHKKWRKTYFSTP-SSKMHAAYPFWTGDKWRGDKTTRKNIEFPTFDELRDGGRLCPDRQWRYV------VTIEDAAKGGCDLFDIEELREEYSEHDFNNLFMCIFVDGA-SSIFEFNKVQKCMVDKRPFGSREVWLGYDPSRTRDNAVLMVVAPPIV----------AAEKFRVLEKHTWRGLSFQHQASE---------------------IDKVFERF--NVTYLGIDITGIGAGVYDLLSNKHPRETVAIHYSNENKNRLVMKMIDVIDGQRLQAGMKETAM-AIKRTSTNSGNMMTFKADRSELVGHADDFWALSHAL....... 406
3 -21.500PF02500.13; TRM3_EBVB9/43-316; Probable DNA packing protein, N-terminus  ali follow..  16  130.FQKQVVQSAFGLEKLHIFKQKASVFLIPRRHGKTWIVVAI-ISLILSNLS---NVQIGYVAHQKHVASAVFTEIIDTLTKSFDSKRVEVNK----------ETSTITFRHSGKISSTVMCATCF................................................................................................................................................................................................................................................................................................................................................................. 267
4 -10.500PF07652.12; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  11  1.................FKKKQLIVLDPHPGAGKTR-----KVLPEFIRQAVERRLWTLALAPTR----VVAAEMAEALNGLPVRYLTPAVIQQHTGKEIVDLMCHATFTMRLLSGGRVPNYN--MFIMDEAHFTDPSSIAARGYISTKVDMGEASAVFMTA............................................................................................................................................................................................................................................................................................................................ 134
5 -7.710PF04466.11; YQAT_BACSU/17-409; Phage terminase large subunit  ali follow..  10  3.....................KFQFLVGGYGSSKSYHVALKIVLKLL----REKRTALVIREVYDTHRDSTFSLFDELVSDLKLDHIV---RCVSSPMQIRFSNGSRIIFKGMDKPAKLKSINNISLIIEECSEVKYEGFKELLGR----RHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFVLDDKELYEKRIIVSNDTYYHHSTADDNLFLPESYVQQ--LEELKEY---------DPDLYRIARKGHFGVNGIRVLFEERPHEEVMTAISNINRPLKRVGMDFGFVESYNAVVVAVDHEKKYLYIYWEYY-------------------------------------KNGLTDDKTAEELKEFAETKELIKADSAEPKT-IRYFQQHGFN--MVGARKYQGSRLQYTKKIKR--FRKIICSDRCENTIYELKPLAYATDKLGNII------EDEFTIDPHTLSAIWYALDD. 393
6 -7.210PF05127.12; A2EVG1_TRIVA/302-494; Helicase  ali follow..  13  2.........................ITAARGRGKSA-AIGLSLAAALALGY----SNIFVTAPSIANLTALFEFVIVGLTALKSNPTSSKERPYVTRVNVHLSHGRRQTVQYVRPNMTQYLGQCEILAIDEAAAIPLPIVRQLMG------PYTTLFSSTVDGYEGTG-----RALSLKLFKEFQRTMKSRFTQTTLTK------PIRYAEGDPI....................................................................................................................................................................................................................................................................... 182
7 -6.900PF05894.10; B3VMQ2_BPPH2/1-331; Podovirus DNA encapsidation protein (Gp16)  ali follow..  21........................FVIGARGIGKSY-----AMKVYPINRFIKYGEQFIYVRRYKPELAKVSNYFNDVAQEFPDHELVVKGRRFYIDGKLA-----GWAIPLSVSEKSNAYPNVSTIVFDEFIREKDNSNYNLMDTVFRNRERVRCICLSNA-VSVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKTRFGRDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKFVFSIVYNGLGVWVDVNQGLM---------------------YIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRNIAY...................................................................................................................................... 323
8 -6.810PF12684.5; R7DEK9_9FIRM/19-231; PDDEXK-like domain of unknown function (DUF3799 topsan)  ali follow..  10  14...................AAMASISGKYERPTTRALLVGSFVDRYFEGTLNEFLKENPALYTRKHELRAEFKRANQIIETVKTDPKFMDAMSGEKQRIFTFELFGVKWK------AKLDSYNPGKAITDMWRYDLQGAIYKGVEIVTGEKLPFYLAVVTKERVMDRDIWQIPQSTLDMALRQVEENIGRYADIKAGLLEPVHCGRCDYCKS.......................................................................................................................................................................................................................................................................... 212
9 -5.850PF04851.13; Q893B7_CLOTE/244-395; Type III restriction enzyme, res subunit  ali follow..  17  7.MQVEAIQGLERLRENGQDR---GLLISATGTGKTYLSA--------FELRNYNPKRALFIVHREQIAKQALNSFMNVFGDTRSMGILSGTSKDVDKDFIF-----CTIQTLSKEEQYFDKNEFDYIIIDEVHKAGANSYQKIVN-------NPKFLLGMTATPER........................................................................................................................................................................................................................................................................................................................ 152
10 -5.670PF04665.10; Q6TUP8_YMTV5/6-246; Poxvirus A32 protein  ali follow..  2..................KHFYRIALVGGSGSGKTAYL-----------------LSLFNTFVEKYRHIFLFTPVYNSEYDSYIWPDHVNRVTTYEELDYSLITTKQKIEKYVKKQGNDKTTEMFLLILDDMKQIRSSCLLDFLNHG---RHLNTSIILLCQTYKH--------------VPVNGRTSITHFCCCNVSDSD..................................................................................................................................................................................................................................................................................... 161

FFAS is supported by the NIH grant R01-GM087218-01
8 5 8 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]