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Query: PF03323.11; C0ZIP9_BREBN/16-487; Bacillus/Clostridium GerA spore germination protein, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NLIRQEIAQNADVHIREFSFGQTASRASIVFVDGLSDRDLIDNTILKTLMKDSVAVMVQENSSGDVSVSKDFFINHVLSIHEILECRDVYDLRTKVLTGFTALLIEGTANALLLNTVKVKTRNIDEPVSESLVRGPRVGFTETLSENTALLRRHGENGDLLFLKFQVGERAKKELIIAYMKEIANPALVEEVKNRITKIKIDHVPESGYVEQLIEDNYLSPFPQAQSTERPDRVISALMEGRVAILLDGTPFALIVPVTFSMLLQSPEDYYERWIPSTFIRLLRFFTAFSSLLIPALYISFISFHQGLIPTELAISIISTRQGVPFPALLEALIMEVSIEIMREAGLRLPKPIGPAIGIVGGLIIGQAAVQAGIVSPIMVIVVAVTAISSFAIPSYNLGISLRLIRFLVMFSAAMFGLYGVILFFLLLTSHLVKLKSFGVPYVTPAVPYRLRDWKDFMVRMPLMMMKRRPKMLast
1 -145.000PF03323.11; C0ZIP9_BREBN/16-487; Bacillus/Clostridium GerA spore germination protein  ali  100  1NLIRQEIAQNADVHIREFSFGQTASRASIVFVDGLSDRDLIDNTILKTLMKDSVAVMVQENSSGDVSVSKDFFINHVLSIHEILECRDVYDLRTKVLTGFTALLIEGTANALLLNTVKVKTRNIDEPVSESLVRGPRVGFTETLSENTALLRRHGENGDLLFLKFQVGERAKKELIIAYMKEIANPALVEEVKNRITKIKIDHVPESGYVEQLIEDNYLSPFPQAQSTERPDRVISALMEGRVAILLDGTPFALIVPVTFSMLLQSPEDYYERWIPSTFIRLLRFFTAFSSLLIPALYISFISFHQGLIPTELAISIISTRQGVPFPALLEALIMEVSIEIMREAGLRLPKPIGPAIGIVGGLIIGQAAVQAGIVSPIMVIVVAVTAISSFAIPSYNLGISLRLIRFLVMFSAAMFGLYGVILFFLLLTSHLVKLKSFGVPYVTPAVPYRLRDWKDFMVRMPLMMMKRRPKM 472
2 -7.150PF14340.4; D2B7X5_STRRD/4-126; Domain of unknown function (DUF4395 topsan)  ali follow..  16  3........................................................................................................................................................................................................................................................................................RALRFAAAVTTIV---LALVLVTGSAWLLAAQAVVFALSIFGASPYGMIFKGIVKSPPRELEDAAPPRFAQGVGLVFALVGLVGYVTQITPLALGATAAALFAALNAAFGFCLGCEMFLIIRR..................................................................... 123
3 -6.420PF06168.9; Q8ZUZ9_PYRAE/12-193; Protein of unknown function (DUF981 topsan)  ali follow..  38..............................................................................................................................................................................................................................................................................................AFGAGAVGLGVYILATGVWATAVPLPGPYNILFSDSWPLL-----VVLISLGLSSWFNAFHKVLTYFYAGLSLP-IFVYGVAIGYFYLTRQPEIAMFILIGLSGLLSPLLALKRS-KATAYLIIAMLIIAAVIALFIGISATFSHIPR...................................... 182
4 -5.750PF04147.10; S3ECN4_GLAL2/48-905; Nop14-like family  ali follow..  11  416.......................................................................................................................AKRPEFLTGANAPIKEIEFPEKNGVNGNLAYTFKCPESHEQLLEITKGISLLDLPTVVQRIRALYHPKLNSDNKSKLCNF-AISLID--HISYLANQSKLPPFSVL------ETLIRHIHS-----LAKSYPKE--IANSFRSHLEQFNESRSLSPTPGDLIILTAIG--------TVFPTSDHFHQVVTPALLTMGRYLALKIP--DYAVGAYMCTLCLQYQILSKRYIPEVISFIENSLCTLAPSRMLILPGNFPYHEPKTSVRIAEVLKSGRQLRFSLKVALLDTNLSLLGVASETWSGKASFTEIFEPSLKLKHLGNKTCRPLLPSNTQKSLTSLTQRPLELHHHRP.. 772
5 -5.720PF00889.17; EFTS_LEGPH/73-273; Elongation factor TS  ali follow..  18  50..................................................................................................................................ATVEQARQELVAKIGENIKLRRLEKMHCDGVIGYYLHGSR----IGVMVALKNGSEALAKDIAMHVAASKPMVVSRDQVPAEAIENEREIFTAQAKESGKPQEIIDKMIDGRINVSLLGQPYVKDPNIKVGQLLKEKN--------AEVISFVRY........................................................................................................................................................................................... 197
6 -5.520PF12000.6; C7JFX8_ACEP3/26-192; Gkycosyl transferase family 4 group  ali follow..  17  63.....................................................................................................................................................................................................................................QPDIIIGHHGWGELLNIQDVYPDVPVL--GYFEFYYHTEP-FPLQPQMLPIVRAKNAINLLALTGPSYGQTPTDFQKSAYPAWAADKITVLREGVDLET................................................................................................................................................ 167
7 -5.460PF02537.13; CRCB2_BACLD/5-113; CrcB-like protein, Camphor Resistance (CrcB)  ali follow..  20  32...................................................................................................................................................................................................................................................................................................................................................................IENTSGSLLLGTGFFAARAKKPLVQLCLGYTTMSAFSKETVLLLQSAAHIGVLYLMASLACGVCFAFLGI............................................... 109
8 -5.310PF05960.9; M4NEP1_9GAMM/58-588; Bacterial protein of unknown function (DUF885 topsan)  ali follow..  14  137...........................................................................................LLEKVVTQIASIEKPAGMDSVFAEPLKHFPASVPAADQKRLRDAILAAIDQDVRPAYRKLGEFVARDYAPHGRSQPGIWDLPNGDAIYRYDVEQMTTTKESPQQIHELGLAEVKREGEMTKIAKSQGFADLASFRASLKTNRGYLAQMQPELPKLFGLLPKT-VVPVEAFREKEAPTAEYHQGTPDGSRPGQIFVNTGDFANRSVLSIESTAYHEGVPGHHLQISIAQTLPALPYTAYIEGWAL-YSEQLGKDIGFRLSDELLRADRLV---------LDTGVHYKHWTRQQMVDFFHA--SSEDEPDVQAETDRYVTW---------GQALAYKMGELKILELRTRAKRELGS--RFDIRAFHDEILGLPLDVLEAR... 530
9 -5.260PF07086.10; E5SQZ0_TRISP/18-201; Jagunal, ER re-organisation during oogenesis  ali follow..  13  12......................................................................................................................................................................................................................................................SDGSDF---------RHRQKVATHYRD--SVLNKYRMKVTLSLHALL---LFLIWAKLSVYALRWFDFTLHFVSSIQMPQPEFWEYWIFSFIPSWLTVDAMQRNDSSAILKAYFLFLICGLFPIAIGAGLNLNEL---VTYTKHGRAEELFYDFPVVVIRYIFFAIALQVHVFAMYFCTKLG............................................ 177
10 -5.020PF13962.4; C5Y5G2_SORBI/240-348; Domain of unknown function  ali follow..  18  12.......................................................................................................................................................................................................................................................................................................................................FLAATLIATVTFA----ATFTMPGGYDQAKGI--ALHGNNRVFKTFVISNSVAMCSSIVVIFLLIW-YLAWSQKLTIVACLAMLLSLMTAVY..................................................... 107

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.