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PF03323
Query: PF03323.8; Q3ENA6_BACTI/39-514; Bacillus/Clostridium GerA spore germination protein, from PfamA26U

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NLELIKQQIGHNSDVRFRKFNIGRTDIQAGIVFVDGLSDKEIIDKHIMKLLMDDFSDEYKNETSYVEGTVSKEYIKNKVLTISEVAEVHYIKDLIPKVLIGSTALLIDGLADVFILGTTKANKRNIEEPVSEALVRGPRVGFTEVLSDNTSLLRRHCADESLSLVKLPVGERAKKELVVAFIRDLASTELVDEVKNRIQKIDIDSVLESGYIEQLIEDNYLSPFPQIQNTERPDRVISALMEGRVAILLDGTPFVLIAPVTFSMLLQSPEDYYERWLPGTLLRLLRFMTAFVSLFAPALYISFISFHPGLIPTKLAISIIGSREGVPFPALIEALIMEVAIEVLREAGLRLPKPIGPAMGIVGGLIIGQAAVEAGIVSPIMVIVVAVTAISSFTIPQYSVGITLRILRFVAMFCAAIFGLYGVILFFLLLCSHLVKLKSFGVPYTSPAVPYRFSDWKDFMVRMPLKIMRRRPKIMILast
1 -139.000PF03323.8; Q3ENA6_BACTI/39-514; Bacillus/Clostridium GerA spore germination protein  ali  100  1NLELIKQQIGHNSDVRFRKFNIGRTDIQAGIVFVDGLSDKEIIDKHIMKLLMDDFSDEYKNETSYVEGTVSKEYIKNKVLTISEVAEVHYIKDLIPKVLIGSTALLIDGLADVFILGTTKANKRNIEEPVSEALVRGPRVGFTEVLSDNTSLLRRHCADESLSLVKLPVGERAKKELVVAFIRDLASTELVDEVKNRIQKIDIDSVLESGYIEQLIEDNYLSPFPQIQNTERPDRVISALMEGRVAILLDGTPFVLIAPVTFSMLLQSPEDYYERWLPGTLLRLLRFMTAFVSLFAPALYISFISFHPGLIPTKLAISIIGSREGVPFPALIEALIMEVAIEVLREAGLRLPKPIGPAMGIVGGLIIGQAAVEAGIVSPIMVIVVAVTAISSFTIPQYSVGITLRILRFVAMFCAAIFGLYGVILFFLLLCSHLVKLKSFGVPYTSPAVPYRFSDWKDFMVRMPLKIMRRRPKIMI 476
2 -7.380PF14340.1; D2B7X5_STRRD/3-127; Domain of unknown function (DUF4395 topsan)  ali follow..  15  4..........................................................................................................................................................................................................................................................................................RALRFAAAVTTIVL---ALVLVTGSAWLLAAQAVVFALSIFGASPYGMIFKGIVKSPPRELEDAAPPRFAQGVGLVFALVGLVYVTQITPLALGATAAALFAAFLNAAFGFCLGCEMFLIIRRL...................................................................... 125
3 -7.230PF12000.3; A4F0P0_9RHOB/24-194; Gkycosyl transferase family 4 group  ali follow..  10  5....................................................................................................................................................................DLAFLTQRRDVQLTITYRAHQQATKDSYGLSKDWENAAGAGLGAALALRELHRSEGY----------KPDIIIGHTGWGELLFMKEIFPDVPVI--GFFEYFYRTDPESPPNDQAGFFAKARNTVPYASIESVDLGHVPTAWQRDRFPASFHDRMYLCHDGIRTDRLL................................................................................................................................................ 171
4 -6.250PF04147.7; A4QVL9_MAGO7/41-869; Nop14-like family  ali follow..  10  275......................................ESARLKELEEKRLKRMRGEEVSDEEEEEEEESSDESDEGESEEDDEFQLGKGIKMRPTATELGFDDEDDFIIDDDLVASGSDIEPEDSDEDDESDAESSGSEAEADGDESEDEFTKGLLTETEIKNAEFTAKNGDAKDDSDGVPFTFPCPRTHAELLEITKEVPVAK--LTTVIQRIRALHHSKL--AMGNKERLGVFSRVLVQ-HIAHLGNSDAPSAPIEGLIRHVHSLAKTYPLEISREFRLHLQAI-DLMIMTAIGSIYPTSDHFHRVVTPAMLTMALGQSVPRTLANYATGLYLAILSLQYQAFSKRYVPEVMNSVLNTLLALAPVEYAEELGFFPVHRPTCSSSSTKSPNCLKVAILDTSLKVLSSAADLWSGKSAFFETFETATKVLSHL--TSKACKSHLPPSIVKEATRLQKHL-RRPLELHHHKPVAI. 745
5 -5.840PF06168.6; Q97XD8_SULSO/1-209; Protein of unknown function (DUF981 topsan)  ali follow..  13  9....................................................................................................................................................................................................................................................LMLFILPLVSVLIAYTTVQAFIGFRKTGYEAIKRSLDDSILPAAILGTIIIILSLWGEFS------LPGSYNILFYDV-------LLLGITILSYSVTVYMGKRLQSTGIFALFVGLI-TIYYGASGYNLGLTKEPLATTYGIAGILGYGVKDPKLEGWMYAFFILFWIFVIIAGIIGAFIAVETIPAHLAH........................................ 207
6 -5.760PF13515.1; E2S6D6_9CORY/322-448; Fusaric acid resistance protein-like  ali follow..  18.............................................................................................................................................................................................................................................................................................................................................VVSAFLMLQWGPDHVPGTVRGIHRMLGSVVGVLLFSILHYFGIQGWTLLLALAACQFCAEIFVAKNYAICVIFSTPLALLMGNSATILSILIATAV............................................... 127
7 -5.620PF02537.10; A5FV99_ACICJ/73-188; CrcB-like protein  ali follow..  18  36.....................................................................................................................................................................................................................................................................................................................................................................SINVLGSFLIGVLTAERVAIDPAIRTGVLTGFLGGYTTFSTFELETLMLVENGEIVKSALYVLLSVVLGFIGAVLGV.......................................... 115
8 -5.350PF10801.3; A5U0S0_MYCTA/9-92; Protein of unknown function (DUF2537 topsan)  ali follow..  21  1..............................................................................................................................................................................................................................................................................................................................................................VPWATGLAVAGFVAAVIAVAVVVLSLVHPLLAVGLNIVAVSGLA-PTLWGWRRTPVLRWFVLGAAV-----GVAGAWLALLALTLG........................................ 84
9 -5.290PF02990.11; TMN2_YEAST/67-630; Endomembrane protein 70  ali follow..  220.............................................................................................................................................FVASDTVWATRWDKYLHIYDPQIQWFSL---INFSVIVILLSSVVMHSLLRALKSDLARYN-----ELNLDNEFHEDSGWKLGDVFRTPSKSMLLSILVGSGMQLFLMVSRGSLPTVMFVLYALFGFVGSYASMGVYKFF-PYWKANMILTPILLPGAIFLLIVI------MNFFLLFAHSSGVIPARSLFFIILLWFLVSV--------------PLSFAGSIV--EHPTKTNQIARQIAQATLIAGIFSFGSIAVELYFI-----YSSLWFNKIFYMFGFLLFSFLLLTLTTSLVTILITYY............................... 523
10 -5.040PF12670.2; Q8RAM7_THETN/11-127; Protein of unknown function (DUF3792 topsan)  ali follow..  10  21.........................................................................................................................................................................................................................................................................................................................................LFFIIYALLLTFTSVSEMALPKFTIFVTITGVLAGALSARNTASKGWLNGGILYIAVMALLGTFLVKEFGPSSSLAVKFLWGAFLGSLGGMIG...................................................... 117

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.