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Query: PF02399.10; OBP_EHV1V/51-880; Origin of replication binding protein, from PfamA26U

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SYTSSVSLARMLYGGDLEEWVRHTRPGVSLEIQSRAPVRFPPPNNPSSRRVTVVRAPMGSGKTTALLKWLGEALDAPDISALVVSCRRSFTRTLAKRFNDAELPGFATYFTSTDYTMAGEPFRRLLVQIESLHRVDDNLLNNYDILVLDEVMSTIGQLYSPTMVHLNKVDALLTRLLKTCPRVIAMDATANAQLVDFLASARGERSVHVIINSFAAPGFSQRDGTLLRTLGTDVLRAALGFVLVDDENGTKVMETDSRPISARLREVNSAGFFGRLMDRLVAGRNVCVFSSTVSFSEIVARFCSQFTDSILVLNSLRPSEDVAFWGGVRVLIYTTVVTVGLSFDTAHFHSMFAYVKPMSHGPDMVSVYQSLGRVRELIHNELLVYVDSSGARAEPIFTPMLLNHVVSRQGGWPAEFSQVTDALCCQFKARCGPAYRTASTRGLALFVRFKYKHFFERCTLASVGDSINILYTLLESNQMRVAIEGCQFPLTAAGFCDFLQDLRLDAYAARKEIKQLRGPGGIAATPTEVFENDDVAVFIQKYLRPGVAHDEILALLVELNSPIVREQFVNVAVLGACLRLPAALESPEVFAGVYKHYASGVVPVISDAGALESVSITPDVNVLARWDLYKSCTRHARDLAWDPSRGGSGLDMSEDFITNTLSADYNRFQSLLVEIAKCNVTPLEMLAAGAVRGVTTALSGRPKSRVPLSKGEHAVSLFKVLWEDVFGAKLAKSTQTFPGGVRVKNLRKDEIVALLESVNVNHSECKTHRELYALLMCNRKLFAGPRYKLRAPKWSRNLCFLELDNTGTCKTPLDAALADLAPSAWPQVYGLast
1 -220.000PF02399.10; OBP_EHV1V/51-880; Origin of replication binding protein  ali  100  1SYTSSVSLARMLYGGDLEEWVRHTRPGVSLEIQSRAPVRFPPPNNPSSRRVTVVRAPMGSGKTTALLKWLGEALDAPDISALVVSCRRSFTRTLAKRFNDAELPGFATYFTSTDYTMAGEPFRRLLVQIESLHRVDDNLLNNYDILVLDEVMSTIGQLYSPTMVHLNKVDALLTRLLKTCPRVIAMDATANAQLVDFLASARGERSVHVIINSFAAPGFSQRDGTLLRTLGTDVLRAALGFVLVDDENGTKVMETDSRPISARLREVNSAGFFGRLMDRLVAGRNVCVFSSTVSFSEIVARFCSQFTDSILVLNSLRPSEDVAFWGGVRVLIYTTVVTVGLSFDTAHFHSMFAYVKPMSHGPDMVSVYQSLGRVRELIHNELLVYVDSSGARAEPIFTPMLLNHVVSRQGGWPAEFSQVTDALCCQFKARCGPAYRTASTRGLALFVRFKYKHFFERCTLASVGDSINILYTLLESNQMRVAIEGCQFPLTAAGFCDFLQDLRLDAYAARKEIKQLRGPGGIAATPTEVFENDDVAVFIQKYLRPGVAHDEILALLVELNSPIVREQFVNVAVLGACLRLPAALESPEVFAGVYKHYASGVVPVISDAGALESVSITPDVNVLARWDLYKSCTRHARDLAWDPSRGGSGLDMSEDFITNTLSADYNRFQSLLVEIAKCNVTPLEMLAAGAVRGVTTALSGRPKSRVPLSKGEHAVSLFKVLWEDVFGAKLAKSTQTFPGGVRVKNLRKDEIVALLESVNVNHSECKTHRELYALLMCNRKLFAGPRYKLRAPKWSRNLCFLELDNTGTCKTPLDAALADLAPSAWPQVYG 830
2 -22.000PF07652.9; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  13  1.............................................FKKKQLIVLDPHPGAGKTRKVLPEFIRQAVERRLWTLALAPTRVVAAEMAEALNGLPVRYLTPAVIQQHTGKEIVDLMCHATFTMRL--LSGGRVPNYNMFIMDEA-----HFTDPSSIAARGYISTKVD--MGEASAVFMTATPPGSREPF......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 143
3 -19.400PF04851.10; Q893B7_CLOTE/244-395; Type III restriction enzyme, res subunit  ali follow..  16  21..............................................NGQDRGLLISATGTGKTYLSAFELRNY---NPKRALFIVHREQIAKQALNSFMN--VFGDTRSMGILSGTSKDVDKDFIFCTIQTLSKLQYFDKNEFDYIIIDEVHKAGANSYQKIVNYF------------NPKFLLGMTATPER.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 152
4 -13.800PF13401.1; B2UJB3_RALPJ/42-210; AAA domain  ali follow..  17  2..............................................SQESILLVCGPTGAGKTTLAKFMVENAHSQSHAEAIYVQSWRLFYQRILNQLGDDLDSPKVAYGVDSLSGRLVRPRGTSGNSLAALRTAVERGLRQVQFMVIDEAAHIFRD--TQRNSKLEVQLDTLKSLVNECGTQIVLVGSYD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 164
5 -13.700PF01443.13; RDRP_TMV/829-1085; Viral (Superfamily 1) RNA helicase  ali follow..  13  1...................................................VLVDGVPGCGKTKEILSRV------NFDEDLILVPGKQAAEMIRRRANS--------------SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLML------------TGCVNFLVAMSLCEIAYVYGDT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 106
6 -12.700PF13872.1; E8RVW0_9CAUL/378-705; P-loop containing NTP hydrolase pore-1  ali follow..  15  81..............................................RLRQGFFLGDGTGVGKGTSVSAVIAENMAQGRTKAIWVSKNDTLIEDARRDWISVGGDANDIVGLSTYKFGTPTTYATLRQAARNGKTSRLDQVVDWGALVFDESHEMANAASGKKKASQQGLAGLLLQYRVPNARVLYVSATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 246
7 -11.600PF05894.7; Q9FZV9_BPGA1/1-335; Podovirus DNA encapsidation protein (Gp16)  ali follow..  10  21....................................................CVIGARGVGKSFAIKSKLVDDFLKNGRQFVYLRMYKTEISKNKSKFDIAINYPNTKFEVKGNDFYINGKLAGYAIPLSGWQALKSSSYPNVYTIFFDEREKDLTGYPPNVVDSLLNVMDTVFRHRVNDPAVVICACNAVTLVNPYFLGFYPNPNQEFSKNDSIVVQIVKNEDYANARRDNRFGKLISGTAYEEMSIDNKFTQDSDLFVQKRSKNSQFNFGIR-------GGKNYGVWVDREQMLMYLSEAYDPKSNQIFALTSDDLTEKNVLVGGWRGNYKLTKLVSAFKKGMLRFENQ-------VVRKHGYDILKQMR.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 334
8 -11.200PF05707.7; Q38198_9VIRU/7-180; Zonular occludens toxin (Zot)  ali follow..  12  1.................................................SISLLTGLPGSGKSLRIIQAIRYLMDK--GAHVYVCNIDGISVPGTTPWAD---------------------------------PHKWQDLPAGSILFVDEAQHFFP---ARRGGDPVETIKAMSTIRHDGVRLVLATQQPNYLDTYLRGLV..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 114
9 -10.600PF00270.24; SGS1_YEAST/680-854; DEAD/DEAH box helicase  ali follow..  13  4......................................QLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPEMISASLARIVVDEAHCVSNHDFRPDYKELKFFKREYPDI------MIALTATASEQVRMDI........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 175
10 -10.000PF06745.8; O29463_ARCFU/20-274; KaiC  ali follow..  12  31...............................................HLAVMNITGVPDTGKSLLAEQFAITQA-GSGYRVLYVTPANFLYTAMKERSEAMGVD--FTKVESNVVVIDASESDELRENPKALMETMAYAIKEKTNTIIDS----ITGLYEHKEMMARQIVRQFFNFMKKYRQTGIFVSQKRSAQASESAEAAGGLAVAHIVD.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 193
11 -9.670PF05127.9; A2EVG1_TRIVA/302-494; Helicase  ali follow..  13  1....................................................GITAARGRGKSAAIGLSLAAALALGYSNIFVTAPSTALFEFVIVGLTALGFREGESEDFEVVKSNPTSSKERPYVTVQYVRPNMTQYLGQCEILAIDEAAAIPLPIVRQLMGPYTTLF---------SSTVDGYEGTGRALSLKLFKEFQRT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 160
12 -9.640PF13604.1; B9QRK8_9RHOB/353-542; AAA domain  ali follow..  16  12...........................................RITGEERMASVVGRAGAGKTTMM-KAAREVWEANGYQVVGAALAGKAAEGLEKEAGI---------------------ASRTLASWQLSWGRGEGLPDKKSVFVIDEAGMV------------SRQMSVFVETIAKAGAKLVLVGDAEQL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 128
13 -9.240PF03266.10; NTPTH_METS5/13-164; NTPase  ali follow..  14  2...................................................LFITGRPGVGKTTLIKGLVSEL---RELKIAGFYTEEVRERGERTGFLFVVIGDGSCPLASTKPIGKERVGRYFVVDSLTLLPQVKQRLEVADLVIMDEIIGDLWKLIQGVLSSNKPVVASVHRSMNIEGKRYELTPVNRDRVREDI........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 151
14 -9.070PF12340.3; Q0TXD7_PHANO/1992-2220; Protein of unknown function (DUF3638 topsan)  ali follow..  17  33........................................HAIIAPKLRENTVLQLNMGKGKTSCIVPMAMAVI-GDGNQLSRLIVPKPLLLPTAQMIQSTNTNPQTLQLYRHLHREMLEGQGVVLIAPESPLSYKQTYLNSICRDVLDESDVSLA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 186
15 -9.030PF05621.6; Q48383_KLEAE/1-302; Bacterial TniB protein  ali follow..  13  8DLSHLLPAAQGLARLPADERIQRLRADRWIGYPRAVEAALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRTHPASSDADVLVVPSVIRFYVALLAAMGA-------------PLRPRPRLPEMEQLALALLRK------VGVRMLVIDELH----NVLAGNSVNRREFLNLLRFLGNELRIPLVGVGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 188

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.