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PF00924
Query: PF00924.13; YKUT_BACSU/67-262; Mechanosensitive ion channel, from PfamA26U

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LNIFAYTLIFIFFVMVLDLFHYDPSALLAGAGIVGLAVGFGAQGLVSDIVTGFFILLEKQLDVGDYITVSTFDGIVEQVGLRTTQIRSFDGTLHYIPNRNITNVSNHSRGTMQALVDIKVPAERNIDEMIHILQQVCDETAAALPQIKEGPNVIGIQELGTSEIVIRVIAKTENMEQWRVERVLRKEIKNAFDRAFLast
1 -89.900PF00924.13; YKUT_BACSU/67-262; Mechanosensitive ion channel  ali  100  1LNIFAYTLIFIFFVMVLDLFHYDPSALLAGAGIVGLAVGFGAQGLVSDIVTGFFILLEKQLDVGDYITVSTFDGIVEQVGLRTTQIRSFDGTLHYIPNRNITNVSNHSRGTMQALVDIKVPAERNIDEMIHILQQVCDETAAALPQIKEGPNVIGIQELGTSEIVIRVIAKTENMEQWRVERVLRKEIKNAFDRAF 196
2 -7.880PF07235.6; A4YY46_BRASO/2-95; Protein of unknown function (DUF1427 topsan)  ali follow..  18  11........LLVGVIYSLLHVRSPAPPLVALVGLLGILVGEQVIPVGRQLLNG................................................................................................................................................ 54
3 -7.100PF06560.6; Q8ZMP7_SALTY/31-215; Glucose-6-phosphate isomerase (GPI)  ali follow..  85................................................VIKGTAAYILQKSPDFAAAPQELVVDDLIVAVVKE-------GQSIIVPPNYGHCSINIGDGPLVFSNLAYKPCTVHYDTVQF................................................................. 160
4 -7.090PF15542; C4WAM1.1/71-173; Putative toxin 64  ali follow..  13  34.........................................LNRLLIQKFAGRLITDSEGWKNKEVINFGQIIGKDKFIKTQWGTVHYSKTGSHIVPNG................................................................................................. 96
5 -7.000PF01597.14; Q20634_CAEEL/22-142; Glycine cleavage H-protein  ali follow..  18  15...............................GVGTVGITDFATEQLGD------VVFIELPDEGTEISKGDSTGAVESVKAASDIYAPISGTVTQK-NVKLEGLINKSPFEKGWLYKLKVKSADELEKLLN................................................................. 110
6 -6.470PF05123.7; Q8X235_METTL/6-279; S-layer like family, N-terminal region  ali follow..  11  2......................KIGAIAVGGAMVASALASGVNAIKEDGTPNVDIVVGSGAAVMDVVSAADVAAKIGSMAYKTGVVEDRSAVVKVSAKAESDDVNIFTLNATNEDIALVAAADSD....................................................................... 118
7 -6.390PF11699.3; Q4PHX4_USTMA/609-694; Mif2/CENP-C like  ali follow..  14  14.............................ATGILHLPPGASKPTKSAKDNSFVFCVLQ---------------GALR-ASVHRKSFIIGPKGVFQVPAGNTYSLENICQREVHL.................................................................................. 82
8 -6.160PF00543.17; O54449_AZOVI/4-105; Nitrogen regulatory protein P-II  ali follow..  19  12......................DVRESLSEIGVQGITVGFGRQKGHTELYRGYVVDFLPKVKIDVAIEDSQLDHVIEAITKAANTGKIGDGKIFVVNLEQAIRIRT.......................................................................................... 101
9 -6.150PF03647.8; A5DF27_PICGU/2-97; Transmembrane proteins 14C  ali follow..  13  1.................EHPAFTLSGLCAVGGVMGYARKGSMPSLVAGTTFSIIYGV-AGYLLKQNADYGLELALGASTTLLAAGIGRAIPSRFKKPVPLVLLVL........................................................................................... 87
10 -6.080PF03064.11; U79_HHV6U/6-233; HSV U79 / HCMV P34  ali follow..  8........................................DVMEVYQQIVTESIQLKRLHFGSGCLIEFLGDSGTCETFC-----------------GGWISMICWTSDTNSMGSLTVDIGIDDGKYKTYNARGFLLCSKSITSISQNTEGRDRILTVSQENNKLQITFVTLTKVFKEHDIRNLGDPKCIEKFEK. 145

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.