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Query: PF00142.16; NIFH1_RHOCB/5-277; 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKLQDTVLHLAAEAGSVEDLEVEDVVKIGYKGIKCTEAGGPEPGVGCAGRGVITAINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERKTDRELELAEALAAKLGCKMIHFVPRNNVVQHAELRRETVIQYDPTCSQAQEYRELARKIHENSGKGVIPTPITMEELEEMLMDFGIMQLast
1 -113.000PF00142.16; NIFH1_RHOCB/5-277; 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family  ali  100  1RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKLQDTVLHLAAEAGSVEDLEVEDVVKIGYKGIKCTEAGGPEPGVGCAGRGVITAINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERKTDRELELAEALAAKLGCKMIHFVPRNNVVQHAELRRETVIQYDPTCSQAQEYRELARKIHENSGKGVIPTPITMEELEEMLMDFGIMQ 273
2 -24.800PF06564.10; A7MKN7_CROS8/1-234; Cellulose biosynthesis protein BcsQ  ali follow..  14  2TVLALQGRGGVGTTSLTAALGWALHQLGESVLVIDASPDN----LLRLSFNIDFDHADGWARALLDDKPWQSTAWRYAPGLDVLPYGALRQTE--VTPALGAFAQHLHLLKASGQWRWILLDLPCGF---DAVTRSLLQVADRTLCVVQPDANCHARLHQQALPSGC----------DLLANFRLISSQNDIWQLWLQTQRNLVPVAVHRDEAMMESLAAKQPVGEYRPDSLVAEEIVTLANWCL............................ 234
3 -19.600PF10609.7; A2SRE7_METLZ/34-283; NUBPL iron-transfer P-loop NTPase  ali follow..  17  7..LVLSGKGGVGKSTVSVNLAYALSNHGYQTGLLDLD---------IHGPSIGKMLGIEDLRLQAIGERIMPVKVTGSLKVVSMALLLNETDSPVVWRGKAAATKQFLGDVEWGDLDYLIVDLTGDE----LNIIQFAPNVEGAVIVTTPQDVAVLDATKAIKFVEMMD----LSVLGVIENMSHCGEIVDIFEKAAEQYKVPYLGAIPLDIEMRKAADEGRPFIVRTPTSPTWDAVDKVMENLI............................ 250
4 -18.900PF01656.21; P72976_SYNY3/5-270; CobQ/CobB/MinD/ParA nucleotide binding domain  ali follow..  16  1..ISTVNKGGVGKTTLTVNLATCLAKYQKRVLVLDLDSQISATLSLMAGKTLSYLLANAIQPNPYSKLDIFDIICPEICQIEGLEL--HQAAIATENPNFETVWNKFEGTPVLEEYDFVILDCYNLLTRSGIAA------SDFYLLPARPEPLSVVGMQLLERRIEKLKES-NINLIGVVFILSGGGLMSRYYNQVMRRVQTDF-QSIPMDVNVAKAVDSFMPV................................................. 266
5 -17.800PF09140.9; Q9A6C9_CAUCR/5-268; ATPase MipZ  ali follow..  12  1RVIVVGNKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSA------------RFFENRRAWLDNKKIELPEPLALNLSDNDVALAERPEEEQVAGFEAAFARAMA-----ECDFILIDTPGGD---SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSRQAMDWVVLRNRNRKRLEDRLNALAKRVGFRIGPGLRDRVIYRELFPFGLTIADLSPQVRPVPVHLAARQELRALMHSLGLS................... 263
6 -17.200PF07015.9; Q1M9M0_RHIL3/1-231; VirC1 protein  ali follow..  12  2QLVTCCSKGGAGKTTALMGLCSALAADGKTIALFEADENRPLSKWKENAT----------------------------------RRNAWDPLCEIFITDELPLLEVAYEEAAGRGFDYCLVETHHGS-----LNNTVIASSNLLLIPTMLTPLDADEALATFRYIIELLIGENLAIPAAILRQRVPANRLSERLISEMLSTLPLADTMHERDAFAAMKDRGMLHLNLRN-AAANSSMRLTLRNLEA........................... 213
7 -17.000PF13614.4; R7M636_9CLOT/2-188; AAA domain  ali follow..  21  2KIIAVVNKGGVGKTTTSINLSASLGLLGKKVLIVDLDSQGNATT-IDKKDISASIYEVLTMRADIHDAIIKTKSRNLSIIPAYLNLAGVQVEFFEMERKFAEQNIKFSKYKIKDDYDYILIDCLGILTTNALAA------ANSVLIPVQCEYYALEGIMQLINTVMLTQKKINPDL................................................................................................. 185
8 -15.300PF02374.13; ASNA_HUMAN/37-340; Anion-transporting ATPase  ali follow..  15  2KWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFDQKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFMQEAMSAFPGI-------AMSYAEVMRLVKGMNFSVVVFDTTGHTL---LNFPFKDPEQTTFICVCIAEFLSLYETERLIQELAKC----KIDTHNIIVNQARHKIQAKYLDQMEDLYEDFHIVKLP................................................................ 283
9 -13.700PF03029.15; O01426_CAEEL/6-251; Conserved hypothetical ATP binding protein  ali follow..  19  1....VIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDT-------------MAYAPDVNITEMITVNDVMDR-----------GPNGALKYCIETLGANCNWLLQKIEANHKKYLIIDCPGQL--------------------------ELYKSEGELWKVIRFLEKSGVRLCALLADSLYCSDPSKFISVALSTLATMVTMEMPQVNCLSKADLFSEDGTYDLEFFSHLPDVNRLLDLLNEVPGLEKYRK---NEAICGVISDFDLVS 221
10 -11.900PF13500.4; B1XHZ8_SYNP2/6-216; AAA domain  ali follow..  12  1QHIVVASEPYSGKSAVLLGLVQSLKQKGISVAYS--KPIGTVWHDEQNGRFTRIEDDLRFLGEAFGLKETEVRSPVLFLDEATVAQRLTGQDQTDYPQKLKDDLGAIAS-------DITFIEAPKSLWEGSLAGEIAATLGAKILLVIPYH------HKLLVDSLLTIYRFLGDRLMGVVINKEALETAETQIKPFLAQRGIDVYGLVPADRILR.......................................................... 208
11 -9.440PF03308.14; Y2483_CAUCR/22-294; ArgK protein  ali follow..  22  35.RIGITGVPGAGKSTTIERFGCNLVEAGHRVAVLAVDPSSGRHGGSILG----------------DKTRMEQLSVQANAFIRPSPSGGALGGVARKTR---EAMLLCEAAG----FDVVIIETVG---VGQSETVVADMVDIFLALLIPGGGDEL---QGIKKGLIELADL-------LVINKADADPAKAERSARDYRNALHIL.................................................................... 202

FFAS is supported by the NIH grant R01-GM087218-01
8 2 8 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.