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Query: PF05634.9; I1MQ97_SOYBN/64-263; APO RNA-binding, from PfamA30U

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PKGTVWRRKTLPQNEDLPPILPKNKKKPYPIPFKEIKQAGREDRKLAHMGIEKPLEPPKNGLLVPDLVPVAYEVFDAWKLLIEGLAQLLHVIPAHGCSECSEVHVAQTGHHIRDCSGTNGRQRRSSHAWVKGSVNDILVPIESYHLFDPFGRRIKHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPIRMLGRRVIDLast
1 -8.7803lvy_A mol:protein length:207 Carboxymuconolactone decarboxylase family  ali model follow..  16...............................HMSKFTIHTIETAPERVKETLRTVKKDNGGYIPNLIGLLANAALETYRTVGEINRRQITAAVTNGCAFCVAGHTAFSIKQIQMAPDLLEALRNATPIDDDPKLDTLA--KFTIAVINTKGRV-----------GDEAFADFLEVG-----YTPENALDVVLGVSLASLC 179
2 -7.7403nyb_B mol:protein length:83 Protein AIR2  ali model follow..  14  6..............................................................................................VQCTLC-----KSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYN--------------------------CGGKGHFGDDCKEKRS............. 67
3 -7.3301u6p_A mol:protein length:56 Gag polyprotein  ali model follow..  22  3.........................................................................VVSGQKQDRQGGERRRSQLDRDQCAYCKE-----KGHWAKDCPKKPRGPRGPR.......................................................................... 50
4 -7.1803gv1_A mol:protein length:147 Disulfide interchange protein  ali model follow..  13  5...........................................................................KAIKEVRGNGKLKVAVFSDPDCPFCKRLELHPDAARKAQC------QPDRAKAWTDWMRKGKFPVGGS-ICDNPVAETTSLGEQFGFNGTPTLV---FPNGRTQSGYSPMPQLEEIIRKNQQ... 139
5 -7.1702db6_A mol:protein length:74 SH3 and cysteine rich domain 3  ali model follow..  19  31................................................................................................CDVCARMIVLKFGLRCKNCKTNIHEH.............................................................................. 58
6 -7.1403j6b_0 mol:protein length:93 54S ribosomal protein RTC6, mitochondrial  ali model follow..  21  57...............................................................................KVRTSVKKF--------CSDCYLVR--RKGRVYIYCKSNKHKQRQG........................................................................... 93
7 -7.0702eli_A mol:protein length:85 Protein kinase C alpha type  ali model follow..  19  31................................................................................................CDHCGSLLYGHQGMKCDTCDMNVHKQ.............................................................................. 58
8 -6.9704b6d_A mol:protein length:61 RAC GTPASE-ACTIVATING PROTEIN 1  ali model follow..  19  22................................................................................................CVPCGKIKFGKLSLKCRDCRVVSHPE.............................................................................. 48
9 -6.9104fyb_B mol:protein length:241 Thiol:disulfide interchange protein (DsbC)  ali model follow..  15  78.......................................................................EDVFSDNKSISPNDKYMLLVFGRNGCSYCERFK---------------------KDLKNVKELRDYIKEHFSAYYVNISYSK-TEELAQIYA-TPTIV-LSDKTGKTIYELPGYMPSTQFLAVLEFIGD 203
10 -6.8202dip_A mol:protein length:98 Zinc finger SWIM domain-containing protein 2  ali model follow..  13  2................................................................SSGSSGLEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHDSYCHLSHTFTF..................................................................... 74

FFAS is supported by the NIH grant R01-GM087218-01
8 5 6 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.