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Query: 5A7E Entity 1(prereleased), from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AIGPVADLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHKSLYDVDDDSTVITLADWYHLAAKVGAPVPTADATLINGLGRSSSTLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEPTTSQTPSTNPLVESALTTLKGTAAPGSPTPGGVDLALNMAFGFAGGNFTINGASFTPPTVPVLLQILSGAQSAADLLPAGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHIFAVVRSAGSSTYNYANPVYRDVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPDVAATNPVPQAWSDLCPTYDALSPDDQLast
1 -5.220 VFG001280(gi:21282246) (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019)] [Staphylococcus aureus subsp. aureus MW2]  ali follow..  609.........VGEAVTKEDGSYLIPNLPNGDYRVEFSNLPKGYEVTPSKQGNNEELDSNGLSSV--NGIQDQDEKGISGV----TVTLKDENGNVLKTVTTDADGKYKFTDLDNGNY-------VEFTTPEG-----YTPTTVTSGSDIEKDSNGLTTTGVINGADNMTLDSGFYKTPKYNLGNYVWEDTNKD----------GKQDSTEKGISGVTVTLKNENGEVLQTTKTDK-GLENGT-YKVEFET---PSGYTPTQVGSGTDEGIDSNGTSTTGVIKDKDNDTIDSGFYKPTYNLGDYVWEDTNKNGVQDKDEKGISGVTVTLVTTDENGKYQFTDL---NNGTYKVEFETPSGYTPTSVTSGNDTEKDSNGLTTTGVIKDADNMTYKTSKYSLGDYVWY--SNKDGKQDSTEKGIKDVKVTLLNEKGEVIGTTKTDENGKYRFD-----NLDSGKYKVIFEKPAG.......................... 1082
2 -5.030 VFG000007(gi:33592928) (fimB) chaperone protein [Fimbriae (VF0031)] [Bordetella pertussis Tohama I]  ali follow..  15  31.......................................................................................................................ITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFFLT-------------PLARVDPGKGQTLRIFFNGYPDGKTLPSDRESLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLSGN................................................................................................................................................................................................................................................. 157
3 -4.830 VFG002293(gi:414655) (ibp) iota toxin component Ib [iota-toxin (VF0381)] [Clostridium perfringens E str. NCIB 10748]  ali follow..  44..........NENTLSSNGL-MGYYFADEHFKDLELMAPIKNKFEEKKVDKLLTEDNSSIKSIRWTGR------------------IIPSEDGEYILSTDRNDVLMQINAKGKVNMKKGQAYNIRI----EIQDKNLGSIDNLSVPKLY-W----ELNGNKTVIPEENLFFRDYSKIDENDPFIPNNNFFDVRFFSAAWEDEDLDTDNDNIPDAYEKNGYTIKDSIADPLVAAYPVVGVGMENLIISTNEHASSD---TTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETY--PKKGLSPLALNTMDQF--NARLIPINYDQLKKLDSGKQIKLE-TTQVSGNYGTKNSQGQII------TEGNSW----NYISQIDSVSASIILDTGSQTFERRVAAKEQGN............. 536
4 -4.790 VFG000269(gi:15644703) (ureA) urease alpha subunit UreA [Urease (VF0050)] [Helicobacter pylori 26695]  ali follow..  14  3...................................LTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIAGKKTAAEL-MQEGRTLLKPDDVMDGVASMIHEVGIEAMFPDGTK--VTVHTPIEANGKLV--------------------PGELFLKNEDITINEGKKAVSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTF-GKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDR................................................................................................................................................................................................................................................. 204
5 -4.620 VFG002165(gi:29376585) (efaA) endocarditis specific antigen [EfaA (VF0354)] [Enterococcus faecalis V583]  ali follow..  11  33IVTTNSILSDLVKNVGQDKIELHSIVPIGTLPEDIAKASEADILFFNGLN------LETGGNGWFNKLMKTAKKVENKDYFSTSKNVTP--YLTSAGQEQTEDPHAWLDIENGIKYVENIRDVLVEKDPKN--KDFYTENAKNYTEKLSKLHEEAKAKFADIPDDKKLLVTSEGAFK--------------SKAYDLN-INTESQGT---TIKKSKAPVLFVETS-VDKRSMERVSKEVKRPIDSLAKEGTEGDTY................................................................................................................................................................................................................................................ 290
6 -4.550 VFG005313(gi:15902165) (pspA) Surface protein pspA precursor [Choline-binding proteins (CVF122)] [Streptococcus pneumoniae R6]  ali follow..  16  409........................................GMWYFYNTDGSMATGWLQNNGSWYYNGAMATGWLQYNGS---------------YYLNANGAMATGWAKVNGSWYYLNA-NGAMAT-GWLQYNGSWYYLNANGAMAT-GSWYYLNAN---GAMATGWLQYNGSWYYLNANGAMATGWAKVNGSWY---YLNANGAMATGWVKDGDTWYYLEASGA----MKASQWFKVSDKWYYVALAVNTTVDGYKVNAN........................................................................................................................................................................................................................................... 615
7 -4.540 VFG001958(gi:15792748) (rfbC) dTDP-4-dehydrorhamnose 3,5-epimerase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]  ali follow..  12  43LVPDGIKFKHDKFINSHFNVLR---GIHGDVKYKLVTCVYGEVHQVVV-----DCRKDSPTYLKWEKFIISYKNQ-------QLILLPPN--MGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDER-----IDWPTNTPILSDRD.......................................................................................................................................................................................................................................................................................................................................................... 173
8 -4.480 VFG001359(gi:15901485) (psaA) manganese ABC transporter, manganese-binding adhesion liprotein [PsaA (VF0151)] [Streptococcus pneumoniae TIGR4]  ali follow..  48.............NIAGDKIDLHSIVPIGQLPEDVKKTSEANLIFYNGIN-------LETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNN--KEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFK-------KAYGVPSAYIWEINTEEEGTPEQIKTLVEQTKVPSLFVESS-VDDRPMKTVSQDTNIPIDSIAEQGKEGDSY................................................................................................................................................................................................................................................ 292
9 -4.370 VFG002299(gi:8926248) (cdtB) CdtB [CDT (VF0385)] [Clostridium difficile str. CCUG 20309]  ali follow..  36NHSNKKKEIVNEDILPNNGL-MGYYFTDEHFKDLKLMAPIKDKFEEKKVDKLLDKDKSDVKSIRWTGR------------------IIPSKDGEYTLSTDRDDVLMQVNTESKVNMKKGKEYKVRI----ELQDKNLGSIDNLSSPNLY-WELDGMKKIIPEEIPDSYERNGYTIKDLIAVKWEDSFAEQGYKKYVSNYLESNTAGDPYTDYEKASGSFDKIKTEARDPLVAAYPIVGVGMEKLIISTNEHASTD---TTNSKTESNTAGVSVNVGYQNGFTANVTTNYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGDTLSTIKAQENQIGNNLSPGDTYPKKGLSPLALNTMDQFSS----RLIPINYDQLKKLDAGKQIKLETTQ---SGNFGTKNSSGQIV-----TEGNSW----DYISQIDSISASIILDTENESYERRVTAKNLQDPEDKTPELTIGE. 549
10 -4.350 VFG000677(gi:4894326) (pagA) anthrax toxin moiety, protective antigen [Anthrax toxin (VF0142)] [Bacillus anthracis str. Sterne]  ali follow..  10  29AEVKQENRLLNESESSSQGL-LGYYFSDLNFQAPMVV-TSSTTGDLSIPSSELENIPSENQSAIWSGF------------------IKVKKSDEYTFATSADNHVTMW-----------VDDQEVINK-----------------------------------------------------SNSNKIRLEKGRLYQIKI-EKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGPTVPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDMENIILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVSAGFSNSNSSTVAIDHSLSLAGERTWAETMGLNTADTARLNANIRYVNTG.................................................... 399

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.