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Query: 3JB5 Entity 1(prereleased), from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADDFLSVGKLELPGSMIGAVRDRAIDSGVLAKLSPEQPTIFGPVKGAVFSGVPRAKIVGEGEVKPSASVDVSAFTAQPIKVVTQQRVSDEFMWADADYRLGVLQDLISPALGASIGRAVDLIAFHGIDPATGKAASAVHTSLNKTKNIVDATDSATADLVKAVGLIAGAGLQVPNGVALDPAFSFALSTEVYPKGSPLAGQPMYPAAGFAGLDNWRGLNVGASSTVSGAPEMSPASGVKAIVGDFSRVHWGFQRNFPIELIEYGDPDQTGRDLKGHNEVMVRAEAVLYVAIESLDSFAVVKEKAAPKPNPPAENLast
1 -6.840 VFG000975(gi:15675770) (ska) streptokinase A precursor [Streptokinase (VF0247)] [Streptococcus pyogenes M1 GAS]  ali follow..  10  145....ADKDGSVTLPTQLKGHVRVRPYKEKPVQNQAKSVDVE-------------TVQFTPLNPDDDFRPGLKDTKLLKTLAIG---TITSQELLAQAQSILNKTHPTIYERDSSIVTHDNDIRTILPMDQEFTYHVKNREQAYEINPKTGIKEKTNNTDLVSEKYYVLKQGEKPYDPF--RSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPRDKAKLLYNNLDAFDIMDYTLTGKVEDNHDKNNRVVTVYMGKRPKGAKGSYHLYDKDL----------YTEEERKAYSYLRDTGTPIPDNPKDK 440
2 -4.080 VFG002294(gi:3478671) (C2I) C2 toxin (component-I) [C2 toxin (VF0384)] [Clostridium botulinum C str. 203U28]  ali follow..  240...........................................................................KLSQEQLGALEGYLNSYLRNNRVPNNDELNKKI-ELISSALSVK-TLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKTKLNEFIDKWTGKEIENLSFSSTSL-------------------------------KSTPLSFSKSRFIFRLRLSEGTIGAFIYGFSGFQDE-QEILL--NKNSTFKIFRITPITSIINRVTKMTQVVIDAEV............................. 425
3 -3.680 VFG041349(gi:52843026) (lubX/legU2) Dot/Icm type IV secretion system effector LubX/LegU2, E3 ubiquitin ligase [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  13  25AALEANLSHPETTPTMLTCPIDSGFLKDPVITPEGF------------VYNKSSILKWLETKKEDPQSRKPLTAKDLQP............................................................................................................................................................................................................................................ 91
4 -3.210 VFG043336(gi:52841569) (flaG) flagellar biosynthesis protein FlaG [polar flagella (AI149)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  17  55.................................................................................TIITEKISDKVLRKMPSDEYLQLLSLLDDIISGSIDKHV................................................................................................................................................................................................... 93
5 -3.100 VFG002540(gi:53722204) (bspR2) N-acyl-homoserine lactone dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]  ali follow..  150...............HWLANVAHASMAPFLPAADEFDPDLTRRETDV--------LKWTADGK--------------TAYEIALILSISESTVNFHVKNIVSKLG---STNKIQAVAKAALMGML.............................................................................................................................................................................................. 234
6 -3.100 VFG000150(gi:15597387) (exoY) type III secretion system effector ExoY, adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1]  ali follow..  11  42............VPVEHALRMQAVARQTNTVFGIRP--------------VERIVTTLIEEG--FPTKGFSVKGKSSNWGPQAGFICVDQHLREDRDTAEIRKLNLAVAKGMDGGAYTQTDLRI............................................................................................................................................................................................... 139
7 -3.090 VFG002542(gi:53722590) (bspR3) N-acylhomoserine lactone-dependent regulatory protein [Quorum-sensing (VF0433)] [Burkholderia pseudomallei K96243]  ali follow..  145................LGMQFNLQFQSMRTCRPIPPSVHLTDREQMC--------LTWVARGK--------------SSWVIANMLDISKYTVDFHIENAMEKLN---TRSRTFAAVKATRQGLI.............................................................................................................................................................................................. 228
8 -3.000 VFG001831(gi:52840687) (icmS) Dot/Icm type IV secretion system chaperone IcmS [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  11  29.................FDEVFSETGLLPAIAKRADQLCSLCLGYGLGATYDESEGALLG-------IRVVFDEVTPNVLRLLCMTDVMNELIQGGPSRDYTPLDELMYD............................................................................................................................................................................................................. 114
9 -3.000 VFG001009(gi:31983791) (spa13) type III secretion system stalk protein Spa13 [TTSS (VF0118)] [Shigella flexneri 2a str. 301]  ali follow..  16  15............................................................ENDLEPVGAQSVSQLFNTRRKIAIV---KKHIIQYQSEGRIEEIQKDIDEANASK........................................................................................................................................................................................................ 71
10 -2.930 VFG001873(gi:52841590) (lspI) general secretion pathway protein I [<  ali follow..  1MMPKTKLVSGFTLIEVLLALTVIAIALTALLKATAQNI------DNTHRIKEKTISHWVAMQG............................................................................................................................................................................................................................................................ 57

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.