current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: 2m74_A mol:protein length:136 Fibrillin-1, from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst SARGGGGHDALKGPNVCGSRYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRPNMCTCPSGQIAPSCGSRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCELast
1 -5.460 VFG043732(gi:23574038) (cdtA) cytolethal distending toxin A [CDT (VF0185)] [Escherichia coli O157:H str. 493/89]  ali follow..  127............NTIQFRNVDVGTCMTSFPGFKGGVQLSTAPCQFGPDRFKSLSTGLCIRANFLERTPSSPYATTLTMERCPSSGERNFEF-------EPLRPALATIVKPEIRPFPPLPIEPDRHSAG....... 255
2 -5.110 VFG002320(gi:123442750) (fliB) flagellin lysine-N-methylase [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  16  16.........SCVG-AACRDH----CCKRWS-TKSQNAEIRRIAITDISVSRASFSNWAEIKLNEHGNCPYLDQDQLCKVHKRLGADALSETCSSYPRLE-RHEKRNSLNISCPEAARQV................. 132
3 -4.930 VFG002189(gi:29376986) (cpsB) phosphatidate cytidylyltransferase [Capsule (VF0361)] [Enterococcus faecalis V583]  ali follow..  11  152............................LFGRRFGRHKLMPD----------VSPNKTI--EGALGGILSAVVVAALFLVFTANKGLFPTVLFSIVGQFGDLVESSIKRHGVKDSGNIL--------PGHGG.... 245
4 -4.710 VFG041293(gi:52841946) (ankI/legAS4) Dot/Icm type IV secretion system effector AnkI/LegAS4 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  10  57..KKKGPGMTHLPGNIYTLFTPVNGPKSKDSKIMLDLHIDNMSSSDYIPSAIDRTDLVM-TGGR-GLFAREDIPKGTCIGIYTGEVYSEQEFAARKGNLTRYINFSDSQDNAENRKKVAKASRYYY-DGWLSAQ.. 257
5 -4.250 VFG001336(gi:22537317) (neuD) neuD protein [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]  ali follow..  95...................................PNALVLTPDSICGRGIFIGFGAFIGSKVKLFDNNVVNTGALIEHHTVVESHCNIAPNATING------LCYIREEVYVGSASVIIQTLDISSCTTIGA... 186
6 -3.920 VFG001880(gi:52841752) (pilB) type IV pilus assembly protein PilB [Type IV pili (VF0155)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  16  413...........................AVKAAQTGHLVLSTLHTNSAAETLNRLVNM-NIASSVTLIIAQRLARKLCNQ-CKAVRDDFTNQGLIELGFK----EADLVNLKLYKAVGCE-----QCTSGYRGR... 512
7 -3.890 VFG043371(gi:15644994) (pseC) flagellar modification protein, aminotransferase PseC [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]  ali follow..  38..EEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS----VATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSYQNKKV. 168
8 -3.630 VFG000112(gi:15599722) (pilB) type 4 fimbrial biogenesis protein PilB [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]  ali follow..  12  406...........................AIKAAQTGHMVMSTLHTNSAAETLTRLLNMGVPAFNLATSVNLIIAQRLARKLCSH--------CKKEHEVPRETLLHEGFPEDKIGTFKLYSPVGCHCKNGYKGR... 504
9 -3.550 VFG000233(gi:15676245) (pilF) type IV pilus assembly ATPase protein [Type IV pili (VF0075)] [Neisseria meningitidis MC58]  ali follow..  16  440..................................AQRLLRRLCSS-CKQEVERPSASALKEVGFTDEDLAKDWKLYRAVGC--------DRCR-GQGYKGRAGVYEVMPISIMNNGTEVDILDVAYKEGMV..... 532
10 -3.530 VFG041277(gi:52841559) (legT) Dot/Icm type IV secretion system effector LegT [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  13  699TCYNAYPSSSATDIAQC-----CGCAD--NNVVIGANPNTESCTQPGALQPQTNAQ--AYPSAYIYPFDDKTSGFTCTNNLSGQPNSTSYTIRCPGGITG.................................... 811

FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 1 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;