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Query: 2N4O Entity 1(prereleased), from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SAIPAPGEGPSVSMAQQKCGAEKVVSCCNSKELKNSKSGAEIPIDVLSGECKNIPINILTINQLIPINNFCSDTVSCCSGEQIGLVNIQCTPILSLast
1 -4.670 VFG002320(gi:123442750) (fliB) flagellin lysine-N-methylase [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  17  19................GAACRD---HCCKRWSITLDKQTYRKYTKSQNAEIRRIAITDISVSIKLNEHGNCDQDQLCCSHEKRNSLNISCPEAAR 130
2 -3.950 VFG002229(gi:17987700) (wbkB) perosamine synthetase WbkB [LPS (VF0367)] [Brucella melitensis bv. 1 str. 16M]  ali follow..  16  233............................QTIPVVDDDNVVDRLSA-------PIAMSCT----------NCSAN--CTNVTQVGMVSI....... 282
3 -3.670 VFG007138(gi:15600788) (hcp-2) type VI secretion system substrate Hcp-2 [VAS (SS181)] [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  7...........................................................................ISIEGQTQGLITAGACTADS 26
4 -3.660 VFG000758(gi:6009388) (bfpH) BfpH lipoprotein [BFP (VF0174)] [Escherichia coli B171]  ali follow..  12  36.......................................................................GGKPGSVSINKNGSHDLGIMQINT 59
5 -3.600 VFG041324(gi:52842510) (ankH/legA3/ankW) Dot/Icm type IV secretion system effector AnkH/LegA3 [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  10  396........................FQACDHANKRHLERAEKILNILILDEYYYV----SYLEEYCIKRLTRKGNNLLKILDDCGIPNIGVNPVAT 465
6 -3.420 VFG043364(gi:15644652) (cheV1) chemotaxis coupling protein CheV1 [Pse5Ac7Ac (AI150)] [Helicobacter pylori 26695]  ali follow..  2.....................ADSLAGIDQVTSLHKNNELQLLCFRLGKNKDLYAVNVFKIREVVKYHGNLTIISHENNSLVEGLIIILTIPLI. 76
7 -3.410 VFG002086(gi:15600889) (vasI) type VI secretion system protein VasI [T6SS (VF0335)] [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  24.......................................................AGSAHVLAASQDAGSQVEQAELCREIPARLERLAC..... 58
8 -3.370 VFG002412(gi:15799997) (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]  ali follow..  16  7.........................................LLALLLSGISPAQALDVGDISSFMNSDSSTLSKTIKNSTDSGRLINIRLERLSS 60
9 -3.370 VFG002416(gi:15799995) (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]  ali follow..  17  197...........................CKDQASGNTHTKAANLRLINTHSLAEVFINSDGVPTLGEGNADCRTQTI---GSRSGLS---CKMVN. 263
10 -3.280 VFG000994(gi:31983573) (ipgF) type III secretion system protein IpgF [TTSS (VF0118)] [Shigella flexneri 2a str. 301]  ali follow..  12  29........................................................NIPSSLLKAIAEKESGFNKSAVNVNNNGSKDYGIMQIND 67

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.