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Query: 2N3I Entity 1(prereleased), from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSESTATSPVLast
1 -5.000 VFG002074(gi:15595286) (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1]  ali follow..  20  488.........................WR-LISQLSLNYLSLAERGQGAAALRELLRLYGDSGDPALQLQIEGLREVSSKPCTRRL.......... 545
2 -4.540 VFG045539(gi:52841920) (lpg1692) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  11  17NKFRVLTSDVAGNIPTHSSVTD-------VLNLIYSSITTHNLFKPHLEPLKAKACVVQGDLATLILIAQRNPAAQKGNITDPRERTFYNVSA. 104
3 -4.460 VFG045602(gi:52843074) (lpg2879) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  11  390.....LPPVFRGANGLINDPIVFMYWPTIRSGAISAVEFVEGVGKTPKTVAAAINLKFGIPKKVTRFVLMLSKEEDFWNLATAFKLWFERHNI. 486
4 -4.440 VFG000920(gi:26250137) (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]  ali follow..  2.........SHVSLQEFLKTEPDGTLEAIAEQYNTTLLEV-----------KNLPSPTVVSGDKFDTVWDTVCEWGNVTTL............. 63
5 -4.390 VFG000880(gi:26249428) (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]  ali follow..  16  1.....MSEYMKNEILEFLNRHDGGKTAEIAEALAVTDYQARY.................................................... 37
6 -4.260 VFG000162(gi:15597622) (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1]  ali follow..  22  121.ALTELPKRTRYAF--EMYRLHGVPQKDIAKELGVSPTLVNFM................................................... 160
7 -4.140 VFG013067(gi:82778667) (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]  ali follow..  2.........SHVSLQEFLKTEPDGTLEVVAEQYNTTLLEV-----------INLPFSTVVPGDKFDTVWDTVCEWGNVTTL............. 63
8 -4.110 VFG002311(gi:123443694) (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0401)] [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  10  267.......................AGWR---------------LVHGECVGEGIRLRYEATPASTIIDFSRRVQELLEQEANFNLEEGGQYGDVF 322
9 -3.980 VFG000925(gi:26246567) (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]  ali follow..  15  48........TLLRTLSRLMTPAHGH--KEVARRIGLLAQNQELVARGRYPHQPLFTRWRKEDEDAVTKAMQATGITHLAD............... 138
10 -3.930 VFG002326(gi:123442756) (fliT) flagellar protein FliT [Flagella (VF0394)] [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  14  13........QILTLSEQMLVLATEGNWDALVESTANITISSCSSLMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSD................. 91

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.