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Query: 2m74_A mol:protein length:136 Fibrillin-1, from PDB0516

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SARGGGGHDALKGPNVCGSRYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRPNMCTCPSGQIAPSCGSRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHCGQPVCESGCLNGGRCVAPNRCACTYGFTGPQCELast
1 -14.200PF01414.17; C3XRV3_BRAFL/47-109; Delta serrate ligand  ali follow..  18  10..................................................................................TAVIDYKIRVLCDEHYYGSNCSRLCRKDDFVGHFTCDQNGNKVCREGWMGADC. 63
2 -12.900PF04885.11; M4CFF0_BRARP/12-161; Stigma-specific protein, Stig1  ali follow..  24  68..................................PEICSSSYYSTGANSTMACCNNKCMD-LSADDKNCGA-----CKNKCKFGQTCCRGQC-VYVAYDKRHCGE--CNHRCNLGELCVY-GLCNY.......... 149
3 -12.100PF12749.5; K1PN32_CRAGI/1-107; Eukaryotic metallothionein  ali follow..  22  3..........................................DPCNCTTGTCVCSDSCPATGCKCGPGCK--CGDGCKCSGCKVKCNCSGSCGCGKGCTGPENCKCANDSECGCKVKCNCSGSCGCGKGCTGPES. 94
4 -9.620PF15550.4; G3W7G3_SARHA/37-338; Draxin  ali follow..  20  219............................................................TSATQEEPCDH------HLDCPPGSCCDLREHLCKP--LNNKCFDD---CMCMEGLRCYAKFHRNRRVTRRKGRCV 287
5 -9.330PF05092.10; Q91EY0_GVCPM/8-537; Per os infectivity  ali follow..  19  62................CISNADCLCLEGLASCQLFNDTVILEIDDNQQMIVEPGQKLCLAIDNRSARSCNPNTGTWMLRQVDNINMAL--ICHCTPGLVTQLNIYDDCSFPCKPHGIIADINTCLCENGFVPPYCR 194
6 -9.320PF09773.7; MKS3_RAT/167-992; Meckelin (Transmembrane protein 67)  ali follow..  17  1..................................GTRCV------RCEPTFVNTSRSCSCSEPHIGGLCFSNTGNFPQRL-ELGMSSNSEWFTKYLQATAAACWTHSNLTSCQALG-----NMCVMNDSTTFDACR 103
7 -8.650PF12999.5; A5DJ02_PICGU/2-183; Glucosidase II beta subunit-like  ali follow..  17  18........................AIRGVEPTRLHLYEPSVENNEKCLNHP-VNDDFCDCPDGSDEPGTNACPYNGSSKYCANNGKLNDGVCDYDICCDGSDEAEGVCPDKCHEIA.................... 129
8 -8.440PF03137.18; H9GXA5_DANRE/22-598; Organic Anion Transporter Polypeptide (OATP) family  ali follow..  17  386................CENLDIAGVTVPYQGST-EVQGVTSDVLPSCNAD-------CGCPDLHWDPVCGENGVSPCHAGCSSGRNKTFHDCGCIQSWGLSVGNSSAVLGQCSQNPNCNR................ 488
9 -8.320PF16019.3; H9J0U8_BOMMO/214-423; Cysteine/serine-rich nuclear protein N-terminus  ali follow..  30  144...............................................................................GCACKGSCNPENCSCSLA--GIKCQVDRLNFPC----GC-TRDGCGNTTG....... 186
10 -8.140PF07327.9; Q966Y0_SCHGR/1-102; Neuroparsin  ali follow..  14  19..................................FHRAEANPISRSCEGANC-VVDLTRCEYGEVTDFFGRKVCAKGPSECGDGLRCNCGRCTGCSMHTLQCYSDFSTPTTC........................ 102

FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 1 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;