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Query: 5fai_A mol:protein length:232 Ribosomal RNA small subunit methyltransferase, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVILast
1 -110.0005fai_A mol:protein length:232 Ribosomal RNA small subunit methyltransferase  ali model  100  1GSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI 232
2 -97.0002v3j_A mol:protein length:258 ESSENTIAL FOR MITOTIC GROWTH 1  ali model follow..  52  12.KGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRDYIEKLDDDESICVFVGAMARGKDNFEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252
3 -83.0003bbd_A mol:protein length:205 Ribosome biogenesis protein NEP1-like  ali model follow..  26  2.............................TYNIILAKSALELIPEEYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEI------NAKKIAIMTKTGKLTHPKLL---KEYDTFIIGGFPYGKLKINKDIKEISIYNKGLMAWTVCGIICYSLS...... 204
4 -82.8003o7b_A mol:protein length:244 Ribosome biogenesis Nep1 RNA methyltransferas  ali model follow..  26  2..........SDITSLYKKVGENLYFQGMGSAFVFLEASLELIPQKPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRD---FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAGDTT---LIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELL---DGDVAVCIGAFPHGDFFEETEFKEVSLGTESYTSLYVTSRVLCEYERVRAH. 235
5 -8.4902qwv_A mol:protein length:208 UPF0217 protein VC_A1059  ali model follow..  9..............................................RSFILRARSAPTDSQRLLDEIGGKCHTEILAHCMMNSLAQSHREDVVIHLVLESTRDYSRTIEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPGLTEALLGELAEHHSLYMMDKKGDSIRD----IKIGPNPCFILT--DHIPMPKKSGNEKISLGPKMLFASQCVTLIHNEIDHQ.... 204
6 -7.2603hpb_A mol:protein length:161 Snx5 protein  ali model follow..  15  12...............................................................................LQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAG................................................................................................ 68
7 -6.7602qmm_A mol:protein length:197 UPF0217 protein AF_1056  ali model follow..  14  8..................................................LIVGNKAFTQPFSLNDLPGAGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPILIKGDEVRRMSPDERNVAGHIKKALAVECGKSWKKVHSGVYVSRKGLEELISEKYSIIYLKEDGVDISN----AQLPPNPLFVIGTEEQEKVVERYAALKLSLSPLSLLAEQCVVIAHHHLDRL.... 195
8 -6.7203aia_A mol:protein length:211 UPF0217 protein MJ1640  ali model follow..  13  31....................................................................SCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQVCIKFVGSEKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSFRNLVLEKLEEGKNIYYLHMNGEDVENV-----DIENPVFIIGGEEDERFLDEIKAKRISLSPLELHANHCITIIHNVLDKK.... 206
9 -6.6902f22_A mol:protein length:144 BH3987  ali model follow..  8.....................LYAANMTNALAKEIPESKWDIQLIPELGTLRKLFIHIVRVRKFPGRLASDEHRLLDELLGTVIQHEGIHQGQYYVALKQSG---------INLPKQWVQDWHM............................................................................................................ 144
10 -6.6403ai9_X mol:protein length:211 UPF0217 protein MJ1640  ali model follow..  13  31....................................................................SCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQVCIKFVGSEKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSFRNLVLEKLEEGKNIYYLHMNGEDVENV-----DIENPVFIIGGEEDERFLDEIKAKRISLSPLELHANHCMTMMHNVLDKK.... 206

FFAS is supported by the NIH grant R01-GM087218-01
1 0 9 0 2 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.