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Query: 4z80_A mol:protein length:508 EGF family domain-containing protein, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSAMGSSTSTSRATYMDRFNIPKNHVDLIWDKDGTKSHTRGNTTYRWTERKSNVGVYVGYSEMYDSSAQAYCQSSSAKIDTKTTVGAPYMAAGACPNYGKVIAFTKRDGSRSDMTRWKNEIHANVMPHSTTSCASRADPGAAEVAKSIEGFAMYAGYLTHCPYNVNVYRQDMVTDKEFDSTVCNFVTESNPLRFLDTTQRQSTQPYTEYAFHGKGGHKGYDYKGQTSHVGCPPYNPPHVTKGMKDSSWITGPFECSILSRCTTHCWPYKSGGNCFRSLPAMFDMSTGECRLLGYHTQDFRSSTCAELTTDDTNAFYCVRPMKTAASSNMVYVTSHTRPDHETKCPPREPLKNVRWGVVSKGKYCKPMNARASLSNATAEQCGQRLFMLSSADGSSLSSQVRGYHWATFVATDCNMGESCAATARGKCFFYSTVPECLIHSPTTMAFTSLSAVDPSIAIDPDSIAVLPEDKCVSVDCGAHGTCDVATGKCVCEPGFTGERCDAAALVPRLast
1 -170.0004z80_A mol:protein length:508 EGF family domain-containing protein  ali model  100  1GSAMGSSTSTSRATYMDRFNIPKNHVDLIWDKDGTKSHTRGNTTYRWTERKSNVGVYVGYSEMYDSSAQAYCQSSSAKIDTKTTVGAPYMAAGACPNYGKVIAFTKRDGSRSDMTRWKNEIHANVMPHSTTSCASRADPGAAEVAKSIEGFAMYAGYLTHCPYNVNVYRQDMVTDKEFDSTVCNFVTESNPLRFLDTTQRQSTQPYTEYAFHGKGGHKGYDYKGQTSHVGCPPYNPPHVTKGMKDSSWITGPFECSILSRCTTHCWPYKSGGNCFRSLPAMFDMSTGECRLLGYHTQDFRSSTCAELTTDDTNAFYCVRPMKTAASSNMVYVTSHTRPDHETKCPPREPLKNVRWGVVSKGKYCKPMNARASLSNATAEQCGQRLFMLSSADGSSLSSQVRGYHWATFVATDCNMGESCAATARGKCFFYSTVPECLIHSPTTMAFTSLSAVDPSIAIDPDSIAVLPEDKCVSVDCGAHGTCDVATGKCVCEPGFTGERCDAAALVPR 508
2 -62.6003sri_A mol:protein length:381 Apical membrane antigen 1  ali model follow..  16  1..................................................................................................................EFIEIVERSNYMGNPWTEYMAKYDIEEV----HGSGIR----------VDLGEDAEVAGTQYRLPSGKCP-------VFGKGIIIENSKTTFLKPVATGNQDLKDGGFAFPPTEPLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNPDKDENSN-YKYPAVYDDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDKSFQNYVYLSKNVVDNWEKVCP-RKNLENAKFGLWVDGN-CEDIPHVNEFSANDLFECNKLVFELSASDQPKQYEQHLTDYADRYKSHGKGYNWGNYNRKTHKCEIFNVKPTCLINDKSYIATTALSHPIEVENNFPMVPRAAAAASFLEQ.................................. 362
3 -61.9003zwz_A mol:protein length:347 APICAL MEMBRANE ANTIGEN 1, AMA1  ali model follow..  17  2.......................................................................................................................SAMGNYMGNPWTEYMAKYDIEEV----HGSGIR----------VDLGEDAEVAGTQYRLPSGKCP-------VFGKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSN-YKYPAVYDDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYTYLSKNVVDNWEKVCP-RKNLQNAKFGLWVDGN-CEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDKADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIE...................................................... 338
4 -59.7003srj_A mol:protein length:381 Apical membrane antigen 1, AMA1  ali model follow..  16  1..................................................................................................................EFIEIVERSNYMGNPWTEYMAKYDIEEV----HGSGIR----------VDLGEDAEVAGTQYRLPSGKCP-------VFGKGIIIENSKTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSN-YKYPAVYDDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYVYLSKNVVDNWEKVCP-RKNLQNAKFGLWVDGN-CEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDKADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINDKSYIATTALSHPIEVENNFPSVPRAAAAASFLEQ.................................. 362
5 -59.1004uao_A mol:protein length:370 Apical merozoite antigen 1  ali model follow..  14  3.....................................................................................................................PIIERSIRMSNPWKAFMEKYDLERA----HNSGIR----------IDLGEDAEVGNSKYRIPAGKCP-------VFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNADDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTN-YRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDSQNKDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCP-RKNLGNAKFGLWVDGN-CEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEEELTDYEDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEFPGLEQKLISEEDLNSA................................. 362
6 -59.0002j5l_A mol:protein length:581 APICAL MEMBRANE ANTIGEN 1  ali model follow..  15  3...............SDVYHPINEHRE-----------HPKEYEYPLHQE------------------HTYQQEDSGEDENTLQHAYPIDHEGA----------EPAPQEQNLFSSIEIVERSNYMGNPWTEYMAKYDIEEV----HGSGIR----------VDLGEDAEVAGTQYRLPSGKCP-------VFGKGIIIENSNTTFLKPVATGNQDLKDGGFAFPPTNPLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNPD-NDKNSNYKYPAVYDYNDKKCHILYIAAQENNGPRYCNKDQSKRNSMFCFRPAKDKLFENYTYLSKNVVDNWEEVCP-RKNLENAKFGLWVDGN-CEDIPHVNEFSANDLFECNKLVFELSASDQPKQYEQHGAFKADRYKSHGKGYNWGNYNRETQKCEIFNVKPTCLINNSSYIATTALSHPIEVEHNFPCSLYKDEIKKEIERESKRINDNDDEGNKKIIAPRIFISDDKDSLKCP. 459
7 -57.1002j4w_D mol:protein length:445 APICAL MEMBRANE ANTIGEN 1  ali model follow..  16  3.......................................................................................................................VERSTRMGNPWKAFMEKYDIERT----HSSGVR----------VDLGEDAEVENAKYRIPAGRCP-------VFGKGIVIENSDVSFLRPVATGDQKLKDGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVMAGDQ-NSNYRHPAVYDEKEKTCHMLYLSAQENMGPRYCSPDAQNRDAVFCFKPDKDESFENLVYLSKNVRNDWDKKCP-RKNLGNAKFGLWVDGN-CEEIPYVKEVEAEDLRECNRIVFGASASDQPTQYEEEMTDNSDNFKSKGRGFNWANFDSVKRKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYKDEEREIKKQSRNMNISNDKESIKCPCEPERISESTCNFYVC.. 407
8 -56.6004apm_A mol:protein length:437 APICAL MEMBRANE ANTIGEN 1  ali model follow..  14  2.......................................................................................................................SAMGSTPKDIWGRYMAKFDLAKS----HGSGIY----------VDLGGTERVGATQHRMPTGKCPVMDFLNRISAENPQDRGLAFPDTAVAVTRNSNARNRAAAE-KTEIILSPVSAADLVRWGY---DGNDVANCAEYAGNIIPA----SDTATKYRYPFVYDAKEEMCHILFTPMQYNRGSRYCDNDGEGTSSLLCMEPMKSGIDAHLYYGSSRVDKKWEENCP-MYPVKDAIFGRGANGS-CVAIESAFEEFTRDAEECSALMFENAAADLEIDEEADNFDETSAKNSKGVGMNWANYDSNTGLCRVIEETPNCLIIDAGSFAMTAVGSPLEQDAVPFPCDIVTPRSRHRNTTPIFEVTTALSREALKCSKYVYSESCGTYYYCSE 417
9 -55.0001w81_A mol:protein length:447 APICAL MEMBRANE ANTIGEN 1  ali model follow..  15  3.....................................................................................................................PTVERSTRMSNPWKAFMEKYDIERT----HSSGVR----------VDLGEDAEVENAKYRIPAGRCP-------VFGKGIVIENSDVSFLRPVATGDQKLKDGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVMAGDQ-NSNYRHPAVYDEKEKTCHMLYLSAQENMGPRYCSPDAQNRDAVFCFKPDKDESFENLVYLSKNVRNDWDKKCP-RKNLGNAKFGLWVDGN-CEEIPYVKEVEAEDLRECNRIVFGASASDQPTQYEEEMTDNSDNFKSKGRGFNWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEVDLEFPCSIYKDEEREIKKQSRNMNISNDKESIKCPCEPERISQSTCNFYVC.. 409
10 -54.3004apl_A mol:protein length:431 APICAL MEMBRANE ANTIGEN 1  ali model follow..  14  2................................................................................................................SAMGSASTPQNPFQTPELKAFLERYNVTLH----HQSGVN----------VDLGQDKEVDGKLYREAAGLCPVWQPNRPPYKNNFLEDIPTEAEYQKSGNPLPGGFNMNFVTP-AGQRISPYPMELLEK-SSKIKASTELGKCAEFAYKTTAMD--KSNQATQYRYPFVYDSKRRLCYILSVSMQRMEGSKYCSTNDDPNLTWYCFEPQKSPTNHNLIFGSAYVGKDFLTKCP-NQALKGYRFGHWTNGRCYTELADSWIEAVDSKAQCWVKTFTNDEVASDQPRTYPLTSQKDQPHSGGDGRNYGFFYNGKGKCALSHKAPDCLVSDSKAVSYTALGSLSEETPDIISNPSVNPSTPDEALQCRSSGSCDVQACKRQKTSCVGGQIQSTSVDCPR 431
11 -53.4004yiv_A mol:protein length:419 Apical membrane antigen AMA1  ali model follow..  14  3................................................................................................................AMGSASTSGNPFQANVEMKTFMERFNLTHH----HQSGIY----------VDLGQDKEVDGTLYREPAGLCPIW--DRPPYRNNFLEDVPTEKEYKQSGNPLPGGFNLNFVTPS-GQRISPFPMELLEK-NSNIKASTDLGRCAEFAFKTVAMDK--NNKATKYRYPFVYDSKKRLCHILYVSMQLMEGKKYCSVKGEPDLTWYCFKPRKSVTNHHLIYGSAYVGENFISKCPNQ-ALRGYRFGVWKKGRCLTELTDTVIERVESKAQCWVKTFENDGVASDQPGSGSGSG--DQPHSGGVGRNYGFYTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNIPSNPSVTPPTPETALQCTADGACDVQACKRQKTSCVGGQIQSTSVDCPR 419
12 -52.8002y8r_A mol:protein length:432 APICAL MEMBRANE ANTIGEN, PUTATIVE  ali model follow..  14  3................................................................................................................AMGSASTSGNPFQANVEMKTFMERFNLTHH----HQSGIY----------VDLGQDKEVDGTLYREPAGLCPIW--DRPPYRNNFLEDVPTEKEYKQSGNPLPGGFNLNFVTP-SGQRISPFPMELLEK-NSNIKASTDLGRCAEFAFKTVAMDK--NNKATKYRYPFVYDSKKRLCHILAVSMQLMEGKKYCSVKGEPDLTWYCFKPRKSVTNHHLIYGSAYVGENFISKCP-NQALRGYRFGVWKKGRC-TELTDTVIERVESKAQCWVKTFENDGVASDQPHTYPLTSQSDQPHSGGVGRNYGFYTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNFPSNPSVTPPTPETALQCTADGACDVQACKRQKTSCVGGQIQSTSVDCPR 432
13 -52.4002x2z_A mol:protein length:456 APICAL MEMBRANE ANTIGEN 1, PUTATIVE  ali model follow..  12  3.....................................................................................................................STSGNPFQANVEMKTFMERFNLTHH----HQSGIY----------VDLGQDKEVDGTLYREPAGLCPIW--DRPPYRNNFLEDVPTEKEYKQSGNPLPGGFNLNFVTP-SGQRISPFPMELLEK-NSNIKASTDLGRCAEFAFKTVAMDKNNKATK--YRYPFVYDSKKRLCHILYVSMQLMEGKKYCSVKGEPDLTWYCFKPRKSVTNHHLIYGSAYVGENFISKCP-NQALRGYRFGVWKKGRC-TELTDTVIERVESKAQCWVKTFENDGVASDQPHTYPLTSQSDQPHSGGVGRNYGFYTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNFIPPTPETALQCTADKFPDSFGACDVQACKRQKTSCVGGQIQSTSVDC.. 408
14 -51.2003zld_A mol:protein length:396 APICAL MEMBRANE ANTIGEN 1  ali model follow..  13  2....................................................................................................................SAMGQNPWATTTAFADFMKRFNIPQV----HGSGIF----------VDLGRDT----EGYREVGGKCPV--FGKAIQMHQPAEYSNNFLDDAPTSNDAKKPLPGGFNNPTSGQKFSPIDDSLLQERLGTAGPKTAIGRCALYAYSTIAVNPSTNYTST-YKYPFVYDAVSRKCYVLSVSAQLLKGEKYCSVNGTPGLTWACFEPVKESSARALVYGSAFVADAWQSACP-NDAVKDALFGKWEDGQC-DTKTSVQSDQATNKEECWKRVFANPASDAPTTYPEAAQKNQSSPKSGGFGANWANFESGETICAIFDQVPDCFAPITGAVAYTALGSSTEVNL--QCDSASFIPIEGPCNNCVVGNQFDQTSKACCTEP-------EAAALVPR 396
15 -20.8004xbm_A mol:protein length:531 Delta-like protein 1  ali model follow..  11  163.........................................................................................................................................................YYG--EGCSVFCRPRDDAFGHFTCGERGEKVCNPGWKGPYCTEPICLPGCDEQHGFCDKPGECKCRVGWQGRYCDECIR--------------YPGCLHGTCQQPWQCN--CQEGWGGLFCNQDLN--YCTHHKPCKNGATCTNTGQGSYTCSC-RPGYTGATCELGIDECDPSPCKNGGSCTDNSYSCTCPPGFYGKICE----------LSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDRCQAGFSGRHCDDNVDDCASSPCANTCPPGYTGRNCS---APVSRCEHAPCHNGATCHQHGYVCECARSYGGPNCQFLLP... 501
16 -18.0004cbz_A mol:protein length:312 PROTEIN JAGGED-1  ali model follow..  13  156................................................................................................................................................................................................................................................................................................................CD---DYYYGFGC---NKFCRPRDDFFGHYACDQNGNKTCMEGW-----------MGPECNR-AICRQGCSPKHGSCKL----PGDCRCQYGWQGLYCD---KCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGT---------------------------HQPCLNGGTCGPDKYQCSCPEGYSGPNCEIV..... 305
17 -16.1004d90_A mol:protein length:143 EGF-like repeat and discoidin I-like domain-c  ali model follow..  11  1...............................................................................................................................................................................................................................................................................................................................................................................DICDPNPCENGGICLPGLAGSFSCECPDGFTDPNCSSVVEVASDEEEPTSPNPCHNGGTCEISEIGYVCKCP-----------------RGFNGIHCQHNINECEVEPCKNGGICTDANYSCECPGEFMGRNCQYKGG... 136
18 -16.0002vj2_A mol:protein length:169 JAGGED-1  ali model follow..  11  3......................................................................................................................................................................................................................................................................................................GSGSIEGRSAVTC-DDYYYGFGC---NKFCRPRDDFFGHYACDQNGNKTCMEGWMGPEC------------NRAICRQGCSPKHGSCKL----PGDCRCQYGWQGLYCD---KCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGT---------------------------HQPCLNGGTCGPDKYQCSCPEGYSGPNCEI...... 163
19 -15.6002vj3_A mol:protein length:135 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  15  2...........................................................................................................................................................................................................................................................................................................................................................................AQDVDECSANPCEHAGKCINTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQN-------DATCLDQIGEFQCICM-----------------PGYEGVHCEVNTDECASSPCLHNGRCLDNEFQCECPTGFTGHLCQVDLH... 122
20 -15.6005fm9_A mol:protein length:157 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  15  1.................................................................................................................................................................................................................................................................................................................SAQADPCASNPCANGGQCLPFEA----------SYICHCPPSFHGPTCR----------QDVNECGQKPCRHGGTCHNEV-GSYRCVCRATHTGPNCERPYVPCSPSPCQN-------GGTCRPTDVTHECACL-----------------PGFTGQNCEENIDDCPGNNCKNGGACVDNTYNCRCPPEWTGQYCTE...... 157
21 -15.5004xlw_A mol:protein length:124 Neurogenic locus notch homolog protein 1  ali model follow..  16  7.................................................................................................................................................................................................................................................................................................................................................................................LGANPCEHAGKCLNTL-GSFECQCLQGYTGPRCEIDVNECISNPCQN-------DATCLDQIGEFQCICM-----------------PGYEGVYCEINTDECASSPCLHNGRCVDNEFLCQCPKGFSGHLCQSGRL... 119
22 -15.4004xlw_B mol:protein length:261 Delta-like protein  ali model follow..  18  138...........................................................................................................................................................................................................................................................................................................................................TLTRLRYSYRVVCSDNY-----------YGDSCSRLC-KKRDDHFGHYECQP----DGSPSCLPGWTGKYCDQ-PICLSGCHEQNGYCSKPDECNCRPGWQGPLC--------------------------------NECIPHKGCRHGTCT-IPWQCACDEGWGGLFCDQAAA... 261
23 -15.3004gk9_A mol:protein length:279 agglutinin (BOA)  ali model follow..  42.........................................................................................................................................................................................................................................................QNVVALNIKSGDGGRTLTGTMTYVGE---PIGFRATLTQSNTYAVENQWGGSSAPWHPGGTWVIGCRVNQQVVALDIESGDQGATLAGMTYAGEGPIGFKSQQADGGVYA----VENQWGGSSAPWHNGGVWVIGANMTYAGEGPIGFKGNSVAGNNYAVENQWGGT-SAPWHPGGIWLLGCRSGQNV--------------------------------VELYITSGDNGNTGSMTYSGEGPIGFRAMALPQ...... 279
24 -15.2005fma_A mol:protein length:154 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  16  1........................................................................................................................................................................................................................................................................................................QDPCASNPCANGGQ------CLPFE----------------ASYICHCPPSFHGPTCR----------QDVNECGEKPCRHGGTCHNEV-GSYRCVCRATHTGPNCERPYVPCSPSPCQN-------GGTCRTGDVTHECACL-----------------PGFTGQNCEENIDDCPGNNCKNGGACVDNTYNCRCPPEWTGQYCTE...... 154
25 -13.6004xl1_B mol:protein length:230 Delta-like protein  ali model follow..  14  7.................................................................................................................................................................................................................................................QLRLQEFANERGMLANGRPCEPGC--RTFFRICLKHYQA--TFSEGPCTFGNVSTPVLGTNSFVIRDKNGSGRNPLQLPLNFTWPGTFSLNIQAWHTPGDDLRPETSPGNSLISQIIIQGSLAVGKNWKSDEQNNTLTRLR----YSYRVVCSDNYYGDSCSRLCKK-RDDHFGHYECQPDGSPSCLPGWTGKYC------------------------------DQPICLSGCHEQNGYCS-KPDECNCRPGWQGPLCNEAA.... 230
26 -13.4004fbr_A mol:protein length:267 Myxobacterial hemagglutinin  ali model follow..  31.........................................................................................................................................................................................................................................................QNVVALDIKSDDGGKTLKGTMTYNGE---PIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGGKTLTGTTYNGEGPIGFKSEVTD-GVWVLGTRGKQNVINVDAKSNDGGKTLSGT-MTYNGEGPIGFRGTLTSPDTYTVENQWGGS-TAPWNPGGFWMIGARNGQNVVAL--------------------------------NVASSDGGKTGTMIYNGEGPIGFRAR.......... 265
27 -13.4001yxe_A mol:protein length:140 apical membrane antigen 1  ali model follow..  20  2..........................................................................................................................................................................................................................................................................................................................................................RGSGSNAKFGLWVDGN-CEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIE...................................................... 134
28 -13.2004k0v_A mol:protein length:529 TEK tyrosine kinase variant  ali model follow..  19  183..................................................................................................................................................................................................................................................................RLIVRRCEAQKWGPECNHLCT---CMNNGVC-------HEDTGECICP---PGFMGRTC-----------------------EKACELHT------------GRTCKERCSG-QEGCKSYVFCLP---DPYGCSCATGWKGLQCNE---------------------ACHPGFYGPDCK-------------------------------LRC---SCNNGEMCDRFQ--CLCSPGWQGLQCERE..... 321
29 -12.4002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model follow..  11  4............................................................................................................................................SLYLWIDAHQARVLIGFEEDILIVSEGKMAPFTHDFRKAQQRMPAI-------------------PVNIHSMNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTPQIFFKTCQQAECPGGCRNGGFCNERRIC-------------------------ECPDGFHGPHCE-------------KALCTPRCMNGGLCVT----PGFCICPPGFYGVNCDK--ANCSTTCFNGGTCFYPGKCICPPGLEGEQCECRNGGKCIGKSKCKCSKGYQGDLCS------KPVCEPGCGAHGTC-HEPNKCQCQEGWHGRHCNKRY.... 310
30 -11.7001tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model follow..  16  1..................................................................................................................................................................................................................................................................................................................................................SYQVICRDEKTQMIYQ------------QHQSWLRPVLRSNRV-------EYCWCNSGRAQC---------------------------------------------------------------HSVPVKSCSEPRCFNGGTCQQSDFVCQCPEGFAGKSCEIDTRA.. 90
31 -11.7004bdw_A mol:protein length:85 COAGULATION FACTOR XIIA HEAVY CHAIN  ali model follow..  18  16......................................................................................................................................................................................................................................................................................................................................................................................................................................KNEIWYRTEQAAVARCQCKGPDAHC----------------QRLASQACRTNPCLHGGRCLEGHRLCHCPVGYTGPFCDVDTAA.. 85
32 -11.4001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model follow..  1.................................................................................................................................................................................................................................................................................................................EEMKKGHLERECMEETCSYEEAR----------EVFEDSDKTNEFWNKY----------KDGDQCETSPCQNQGKCKDGL-GEYTCTCLEGFEGKNCELFTRKLCS------LDNGDCDQFCHEEQNSVVCSCA-RGYTLADNGKACIPTGP-APDSITWKPYDAADLDPTENPFDLFNQTQPERGDNNLTRIVGGQE..... 195
33 -11.4001pfx_L mol:protein length:146 FACTOR IXA  ali model follow..  1.....................................................................................................................................................................................................................................................................................................................................................................YNSGKLEEFVRGNLERECIEEKCSFEEA-REVFENTEKTNEFWKQYVDGDQCEPNPCLN-------GGLCKDDINSYECWCQ-----------------VGFEGKNCELDATCNIKNGRCKQFCKTGSKVLCSCTTGYRLAPDQKSCKCGR 134
34 -11.3005es4_B mol:protein length:727 Integrin beta-2  ali model follow..  51..CAADDIMDPTSLAGGQKQLSPQKVTLYLRPGQAAAFN--DLSYSMLDNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNCPNKEK------ECPPFARHVLKLTNNSNQFQTEVGKQLISGN-LDAPEGGLVTRLLVFATDDGFHFAGDGKLGAILTRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATEC-FTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGI--------------CRCDTGYIGKNCECGRSSQELEGSCRKDNNSIICSGLGDCV------GQCLCHTSDVPGKLIYGQYCECDTIGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVE-----------------------CSGRGRCRCN--VCECHSGYQLPLCQECPGCP. 597
35 -10.9002m74_A mol:protein length:136 Fibrillin-1  ali model follow..  16  13...........................................................................................................................................................................................................................................................................................................................................GPNVCGSRYNAYCCPGWKTLPG--GNQCIVPICRH-------SCGDGFCSRP-----NMCTCPSGQIAPSCGSRSIQHCNIRCMNGGSCSDDHCLCQKGYIGTHC-------------------------------GQPVCESGCLNGGRC-VAPNRCACTYGFTGPQCE....... 136
36 -10.7001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model follow..  18  7.........................................................................................................................................................................................................................................................................................................................................................................................................................................EVKQGNLERECL--EEACSLEEAREVFEDAEQTDEFWSKYKDGDQCEGHPCLNQGHCKDGDYTCTCAEGFEGKNCEFSTR... 86
37 -10.4001dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model follow..  20  7.........................................................................................................................................................................................................................................................................................................................................................................................................................................ELRPGSLERECK--EEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQSYICFCLPAFEGRNCETHKD... 86
38 -10.0001fax_L mol:protein length:96 FACTOR XA  ali model follow..  27  2.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KDGDQCETSPCQNQGKCKDGEYTCTCLEGFEGKNCELFTR... 43
39 -9.8404neh_B mol:protein length:686 Integrin beta-2  ali model follow..  51..CAADDIMDPTSLAGGQKQLSPQKVTLYLRPGQAAAFN--DLSYSMLDNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNCPNKEK------ECPPFARHVLKLTDNSNQFQTEVGKQLISGN-LDAPEGGLVTRLLVFATDDGFHFAGDGKLGAILTRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFT-CRCRDQSRDRSLCHGKGFLECGI--------------CRCDTGYIGKNCECQTQGRSSQELERKDNNSIICSGLGDCV------GQCLCHTSDVPGKLIYGQYCECDTGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVE-----------------------CSGRGRCRCN--VCECHSGYQLPLCQECPGCP. 597
40 -9.6101hre_A mol:protein length:67 HEREGULIN ALPHA  ali model follow..  26  1............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTSHLVKCAEKEKTFCVNGGECNPSRYLCKCQPGFTGARCTENVP... 52
41 -9.5704um8_B mol:protein length:788 INTEGRIN BETA-6  ali model follow..  12  70..CQLNFIENPVSQVEDIVQIAPQSLILKLRPGGAQTLQ--DLSASMDDSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANCSSIPY------FCPTFGKHILPLTNDAERFNEIVKNQKISAN-IDTPWRNDSLHLLVFVSDADSHFGMDSKLAGIVCLCHLDSKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVG---LLQKDSGNILQLIISAYEELRSEVELEVLGDTEGLNLSFTAICNNGTLF------------QHQKKCSHMKVGDTASFSVTVNIPHCERRSRHIIIKPVGLGDALE-------LLVSPECNCD------------------CQKEVEVNSSKCHHGNQCG-------VCACHPGHMGPRCECGEDMLSTDSCAPDHPSCSGRGDCYCG----QCICHLSP----------YGNIYGPYCQCDNFSCVRHKGLLCGGNGDCDCG--ECVCRSGWTGEYCNCTTS... 579
42 -9.5601p0s_L mol:protein length:138 Coagulation factor X precursor  ali model follow..  16  7.........................................................................................................................................................................................................................................................................................................................................................................................................................................EMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWN--KYKDGDQCETSPCQNQGKCKDGEYTCTCLEGFEGKNCELFTR... 86
43 -9.1701f7e_A mol:protein length:46 PROTEIN (Blood Coagulation Factor VII)  ali model follow..  30  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SDGDQCASSPCQNGGSCKDQSYICFCLPAFEGRNCETHKD... 42
44 -9.1102ygo_A mol:protein length:188 WNT INHIBITORY FACTOR 1  ali model follow..  26  148....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QAECPGGCRNGGFCNERR-ICECPDGFHGPHCEGT..... 181
45 -9.0401egf_A mol:protein length:53 EPIDERMAL GROWTH FACTOR  ali model follow..  21  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................NSYPGCPSSYDGYCLNGGVCSLDSYTCNCVIGYSGDRCQTRD.... 46

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.