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Query: 4xbm_A mol:protein length:531 Delta-like protein 1, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SSGVFELKLQEFVNKKGLLGNRNCCRGGAGPPPCACRTFFRVCLKHYQASVSPEPPCTYGSAVTPVLGVDSFSLPDGGGADSAFSNPIRFPFGFTWPGTFSLIIEALHTDSPDDLATENPERLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHFTCGERGEKVCNPGWKGPYCTEPICLPGCDEQHGFCDKPGECKCRVGWQGRYCDECIRYPGCLHGTCQQPWQCNCQEGWGGLFCNQDLNYCTHHKPCKNGATCTNTGQGSYTCSCRPGYTGATCELGIDECDPSPCKNGGSCTDLENSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDAYLCRCQAGFSGRHCDDNVDDCASSPCANGGTCRDGVNDFSCTCPPGYTGRNCSAPVSRCEHAPCHNGATCHQRGHGYVCECARSYGGPNCQFLLPELPPGPAVVDLTEKLEGQGGPFPWENLYFQLast
1 -107.0004xbm_A mol:protein length:531 Delta-like protein 1  ali model  100  1SSGVFELKLQEFVNKKGLLGNRNCCRGGAGPPPCACRTFFRVCLKHYQASVSPEPPCTYGSAVTPVLGVDSFSLPDGGGADSAFSNPIRFPFGFTWPGTFSLIIEALHTDSPDDLATENPERLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHFTCGERGEKVCNPGWKGPYCTEPICLPGCDEQHGFCDKPGECKCRVGWQGRYCDECIRYPGCLHGTCQQPWQCNCQEGWGGLFCNQDLNYCTHHKPCKNGATCTNTGQGSYTCSCRPGYTGATCELGIDECDPSPCKNGGSCTDLENSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDAYLCRCQAGFSGRHCDDNVDDCASSPCANGGTCRDGVNDFSCTCPPGYTGRNCSAPVSRCEHAPCHNGATCHQRGHGYVCECARSYGGPNCQFLLPELPPGPAVVDLTEKLEGQGGPFPWENLYFQ 531
2 -50.2004cbz_A mol:protein length:312 PROTEIN JAGGED-1  ali model follow..  40  1.SGQFELEILSMQNVNGELQNGNCCGGARKCTRDECDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVINTFNLKASRGNDRNRIVLPFSFAWPRSY----------TLLVEAWDSSNDTVQPDSIIEKASHSGMINPSRQWQTLQNTGVAHFEYQIRVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIV............................................................................................................................................................................................................................... 305
3 -44.3002vj2_A mol:protein length:169 JAGGED-1  ali model follow..  53  3..................................................................................................................................................GSGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI................................................................................................................................................................................................................................ 163
4 -44.0005fm9_A mol:protein length:157 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  35  1.......................................................................................................................................................................................................................................................................................................................................................SAQADPCASNPCANGGQCLPFEAS-YICHCPPSFHGPTCRQDVNECGQKPCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCT.................................. 156
5 -43.6004xlw_B mol:protein length:261 Delta-like protein  ali model follow..  42  1SSSIFQLRLQEFANERGMLANGRPCEPGCRTFFRICLKHYQA--------TFSEGPCTFGNVSTPVLGT-NSFVIRDKNSGSGRNPLQLPLNFTWPGTFSLNIQAWHTPGDDLRPETSPGNSLISQIIIQGSLAVGKNWKSDEQNNTLTRLRYSYRVVCSDNYYGDSCSRLCKKRDDHFGHYECQPDGSPSCLPGWTGKYCDQPICLSGCHEQNGYCSKPDECNCRPGWQGPLCNECIPHKGCRHGTCTIPWQCACDEGWGGLFCDQAAA..................................................................................................................................................................................................................................................................... 261
6 -43.6005fma_A mol:protein length:154 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  35  2...........................................................................................................................................................................................................................................................................................................................................................DPCASNPCANGGQCLPFEAS-YICHCPPSFHGPTCRQDVNECGEKPCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCT.................................. 153
7 -42.9004fbr_A mol:protein length:267 Myxobacterial hemagglutinin  ali model follow..  13  2...................................................................................................................................................................................................................................................AAYLVQNGSQATWNPGGLGARDKQNVVAL--DIKSDDGGKTLK-GTMTYNGEGPIGFRGTLSSANNYTGTSAPWQPGGVWV--------------LGARDKQNIVAV-SIKSNDGGKTLTGTTT-YNGEGPIGFKSEVTDGDTYSGSAAPWHSGGVWV--------------LGTRGKQNVINV-DAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPG-----GFWMIGARNGQNVVALNVA----SSDGGKTLAGTMIYNGEGPIGF.. 262
8 -42.2002vj3_A mol:protein length:135 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  31  3...............................................................................................................................................................................................................................................................................................................................................................................................QDVDECSANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN................... 133
9 -41.3001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model follow..  16  1.................................................................................................................................................................................................................................................................................................................EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGL-GEYTCTCLEGFEGKNCELFTRKCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTRIVGGQE................................ 195
10 -40.9004gk9_A mol:protein length:279 agglutinin (BOA)  ali model follow..  12  6.............................................................................................................................................................................................................KTSKGFNNLQHVQNGSSAPWHEGGMGCRSGQALNIKSGDGGRTLTTYVGEGPIGFRATLTQSNTYAVENSAPWHPGGTWV---------------IGCRVNQQVVALDIE-SGDQGATLAGTMTYAGEGPIGFKSQQADGGVYAGSSAPWHNGGVWVIG-----------------ARDQAVVAVSIGSTDSGKTLNGNMTYAGEGPIGFKGNSVAGNNYAGTSAPWHPGGIWLL--------------GCRSGQNVV-ELYITSGDNGNTFHGSMTYSGEGPIGFRAMALP.................................. 278
11 -40.6001pfx_L mol:protein length:146 FACTOR IXA  ali model follow..  17  1........................................................................................................................................................................................................................................................................................................................................................................................YNSGKLEEFVRGNLERECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLTR......... 146
12 -40.3004xlw_A mol:protein length:124 Neurogenic locus notch homolog protein 1  ali model follow..  31  1................................................................................................................................................................................................................................................................................................................................................................................................DVDECAANPCEHAGKCLNTLGSFECQCLQGYTGPRCEIDVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEINTDECASSPCLHNGRCVDKINEFLCQCPKGFSGHLCQSGRLEVLFQ......................... 124
13 -36.1004d90_A mol:protein length:143 EGF-like repeat and discoidin I-like domain-c  ali model follow..  34  1...........................................................................................................................................................................................................................................................................................................................................................DICDPNPCENGGICLPGLDGSFSCECPDGFTDPNCSSVVEVASDEE--------------------------EPTSAGPCTPNPCHNGGTCEDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGG.............................. 136
14 -35.1001dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model follow..  20  2..............................................................................................................................................................................................................................................................................................................................................................................NAFLEELRPGSLERECKE--EQCSFEEAREIF----------KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL----EKRNASKPQG... 151
15 -34.3002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model follow..  28  69.........................................................................................................................................................................................FYEFLSLRSLDKGIMADVNVPLLGTVPHKASVVQ-VGFPCLGKQDGVAAFEVDVIVMNSEGNT---ILKTPQNAIFFKTCQQAE----CPGGCRNGGFCNE----RRICECPDGFHGPHCEK---ALCTPRCMNGGLCVT---PGFCICPPGFYGVNCDKAN---CSTTCFNGGTCFY----PGKCICPPGLEGEQCEISK---CPQPCRNGGKCIG---KSKCKCSKGYQGDLCSKPV---CEPGCGAHGTCHE---PNKCQCQEGWHGRHCNKRYEASLIG............................................................... 316
16 -34.1001yo8_A mol:protein length:634 thrombospondin-2  ali model follow..  15  2.........................................................................................................................................................................................................DPDGCLSNPCFPGAQCSSSWSCFCPVGFLGNGTDECALVSTSKVPRCVNGFHCPCPPRYRGNQPVEPENPCKDKHNCHKHAECIYLSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTD-EKDNCQLLFNPRQADYDKDEVGDRYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDDRDNCRLVFNPDQEDLDGDGRGDICKDDFD 390
17 -33.6001p0s_L mol:protein length:138 Coagulation factor X precursor  ali model follow..  25  2..............................................................................................................................................................................................................................................................................................................................................................................NSFLEEMKKGHLERECMEET--CSYEEAREVFEDSDKTNEFWNKYKDG----------DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQT................... 136
18 -30.8004xl1_B mol:protein length:230 Delta-like protein  ali model follow..  37  2SSSIFQLRLQEFANERGMLANGRPCEPGCRTFFRICLKHYQAT--------FSEGPCTFGNVSTPVLGTNSFVDKNSGSGRNPLQLPLNFTWPGTFSLNIQAWHTPGDDLRPETSPGNSLISQIIIQGSLAV---GKNWKSDEQNNTLTRLRYSYRVVCSDNYYGDSCSRLCKKRDDHFGHYECQPDGSPSCLPGWTGKYCDQPICLSGCHEQNGYCSKPDECNCRPGWQGPLCNEAA..................................................................................................................................................................................................................................................................................................... 230
19 -30.1001aut_L mol:protein length:114 ACTIVATED PROTEIN C  ali model follow..  23  1...........................................................................................................................................................................................................................................................................................................................................................................................................................SKHVDGDQCLVPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSH.......... 113
20 -28.0001fax_L mol:protein length:96 FACTOR XA  ali model follow..  31  2.....................................................................................................................................................................................................................................................................................................................................................................................................................................KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACIPTGPYPCGKQTLE................. 95
21 -26.9001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model follow..  19  1...................................................................................................................................................................................................................................................................................................................................................................................................................ANSFLEEVKQGNLE------------RECLEEACSLEEAREVFEDAEQTDEFWSKYKDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFSTR.............................. 86
22 -25.2004k0v_A mol:protein length:529 TEK tyrosine kinase variant  ali model follow..  14  16.............................AETSLTCIASGWRPHEPITIGRDFEALMNQ--------HQDPLEVTQDVTREWAKKVVWKREKASKINGAYFCEGRVRGEAI--RIRTMKMRQQASFLPATLTMTVDK-KVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARLIVRRCEAQKWGPECN-HLCTA--CMNNGVCHETGECICPPGFMGRTCEK------------------ACELHTFGRTCKE---RCSGQEGCKSYVFCLPD---PYGCSCATGWKGLQCNEA-------------------------CHPGFYGPDCK---LRCS---CNNGEMCDRFQG----CLCSPGWQGLQCEREGIP-TPKIVDLPDHIEVNSGKFNPICKSGWPLPTNEEFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVE--------KPFNISVKVLPKPLNAPNVIDTGHNFAVINISSEPYFGDGPIKSKKL................. 459
23 -25.0004bdw_A mol:protein length:85 COAGULATION FACTOR XIIA HEAVY CHAIN  ali model follow..  15  2...................................................................................................................................................................................................................................................................................................................................................................................................................................SEKCFEPQLLRFFHKNEIWYRTEQAAVARCQCKGPDAHCQLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDTAA............................. 85
24 -24.6002m74_A mol:protein length:136 Fibrillin-1  ali model follow..  27  8..............................................................................................................................................................................................................................................HDALKGPNVCGSRYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRPN-----MCTCPSGQIAPSCGSRSIQHCNIRCMNGGSCSDD----HCLCQKGYIGTHCGQPVCE---SGCLNGGRCV----APNRCACTYGFTGPQCE.................................................................................................................................................... 136
25 -23.7001tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model follow..  23  1.....................................................................................................................................................................................................................................................................................................................................................................................................................SYQVICRDEKTQMIYQ--QHQSWLRPVLRSNRV------EYCWCNSGRAQ-CHSVPVKSCSEPRCFNGGTCQQALSDFVCQCPEGFAGKSCEIDTR.............................. 89
26 -22.5001z1y_A mol:protein length:186 ookinete surface protein Pvs25  ali model follow..  17  1..............................................................................................................................................................................................................................................................................................................................................................................................EAEASAVTVDTICKNGQLVQMSNHFKCMCNEGLSENTCE-EKNECKKETCGEFGQCIENPNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECLSEIQSAGCSCAIGKVEKKCT-KTGETACQLNTDNEVCKNVEGVYKCQCMEGF.. 168
27 -20.8004z80_A mol:protein length:508 EGF family domain-containing protein  ali model follow..  11  154..................................................................................................................................................................YAGTHCPYNVNVYRQDMVTDKEFDSTVCNFVTESNPLRFLDTTQRQSTQPYTEYAFHGKGGHKGYDYKGQTSHVGCPSWITGPFECSILSRCTCWPYKSGGNCFRSLPFDMSTGECRLLGYHTQDFRSSTCAELTDDTNAFYCVRPMKTAASSNMVYVTSHTR--PDHETKCPPREPLKNVRKPMNARASLSNATAEQCGQRLFMLSSADGSSLSSQVRGYHWATFVATDCNMGESCAATARG----KCFFYSTVPECLIHSPTTMAFTSLS-------------AVDPSIAIDPDSLPEDKCVSVDCGAHGTCDV--ATGKCVCEPGFTGERCDAAAL.............................. 505
28 -20.7001uzj_A mol:protein length:162 FIBRILLIN-1  ali model follow..  14  1...............................................................................................................................................................................................................................................................................................................................................................................................TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRTVILE-DIDECQELPLCQGGKCINTFGSFQCRCPTGY.. 152
29 -18.2001hre_A mol:protein length:67 HEREGULIN ALPHA  ali model follow..  22  1................................................................................................................................................................................................................................................................................................................................................................................................................................GTSHLVKCAEKEKTFCVNGGECLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKAEELYQK..................................................... 67
30 -17.3002bo2_A mol:protein length:143 EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE  ali model follow..  25  1................................................................................................................................................................................................................................................................................................................................................................................................DSRGC-ARWCPQDSSCV---NATACRCNPGFSSETCD-DINECATLSCGKFSDCWNTEGSYDCVCSPGYEENTCQ-DVDECSSGQCDSSTVCFNTVGSYSCRCRPGWKGIPNNQKDTVCE........................... 143
31 -17.3002w86_A mol:protein length:147 FIBRILLIN-1  ali model follow..  19  1..............................................................................................................................................................................................................................................................................................................................................................................................SADIDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIE------TIKGTCWQTVIDGRCEININGLKSQCCSSLGAAWGSPCTLC--------QVDPICGKGYSGTQCE-DIDECEVFP--KNGLCVNTRGSFKCQCPSGM.. 137
32 -16.8002ygo_A mol:protein length:188 WNT INHIBITORY FACTOR 1  ali model follow..  18  53.........................................................................................................................................................................................................................IHSMNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGF----PCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAQAECPGGCRNGGFCN---ERRICECPDGFHGPHCEGT......................................................................................................................................................................................... 181
33 -15.8005es4_B mol:protein length:727 Integrin beta-2  ali model follow..  20  359..........................................................................................................................................................................................TYDSFCSNGVTHRNQPRGDCDGNVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQC----ECRCR------------DQSRDRSLCHGKGFLE-------ICRCDTGYIGKNCECQTQGCNSIICSGLGDCV------QCLCHTSIYGQYCECDTINCERY---NGQVCGGPGRGL-KCRCHPGFEGSACQRTTEGCLNPRCSGRGRCR------VCECHSGYQLPLCQE---PGCPSPCGKYISCAEC-----LKFEKGPFGKNCSAA--------CPGLQLSNNPVKGRTCKERDS......................................... 645
34 -15.3001f7e_A mol:protein length:46 PROTEIN (Blood Coagulation Factor VII)  ali model follow..  41  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA................................................................ 46
35 -15.1003m0c_C mol:protein length:791 Low-density lipoprotein receptor  ali model follow..  17  2.........................................................................................................................................................GWKLALLLAAAGTAVGDRCERNEFQCQDGKCISDGSAECQDGSDESQET---CLSVTCKSGDFSCGGRVNRCIPQ-GQVDCDNGSDEQGCPPKTCSQD-EFRCHDG----KCISRQFVCDSDRDCLDGSSCPVLTCGPASFQCNSS-----------TCIPQLCDNDPDCEDGSDEWPQRCRGL-DSSPCSAFEFHCLSGECIHSSRCDGGPD------CKDKSDEENCAVATCRPDEFQCSDG-NCIH--GSRQCDCKDMSDEVGCVNVTLCEGPNKCHS-GECITL--DKVCDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGF----QLVAQRRCEDDECQDPDTCVNLEGGYKCQCEEGFQ. 381
36 -14.9005e6w_A mol:protein length:317 Integrin beta-2  ali model follow..  14  1...........................................................................................................................................................................................................QECTKFKVSSCRECIE----------SGPGCTWCQKLNFTGPGDPDSI-RCDTRPQLLMRGCAADTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE------ICRCDTGYIGKNCECQTQGRSSQECSGLGDCVCG----QCLCHTSIYGQYCECDTINCERYNGPGRGLCFCG----KCRCHPGFEGSACQ.................................. 313
37 -14.8004aqs_A mol:protein length:525 LAMININ SUBUNIT BETA-1  ali model follow..  19  253.............................................................................................................................................................................................................................NCFC-----YGHASECAPVDGVNEEVEGMHGHCMCRHNTKGLNCEL----------CMDFPAEGRNSNACKKCNCNE--HSSSCHFDMAVFLATGNVSGGVCDN--------CQHNTMGRNCE----QCKPFYFQHPERDIRDPNLCEPCTCDP--AGSENGGICDGYTDFSVGLIA---------QCRCKLHVEGERCDVDPYGCKSCACNPLGTCDSETG--YCYCKRLVTGQRCDQDLDGCRPCDCDLGGACSEDSG--QCSCLPHMIGRQCN.................................. 524
38 -14.7001emn_A mol:protein length:82 FIBRILLIN  ali model follow..  23  3.....................................................................................................................................................................................................................................................................................................................................................................................................................................VDMDECKEPDVCKHGQCINTDGSYRCECPFGYAGNEC-VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEMMTCE.................................. 82
39 -14.4004wm0_D mol:protein length:50 Coagulation factor IX  ali model follow..  42  2...................................................................................................................................................................................................................................................................................................................................................................................................................................DIVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELL...................................................................... 43
40 -13.9002w2m_E mol:protein length:107 LOW-DENSITY LIPOPROTEIN RECEPTOR  ali model follow..  17  1................................................................................................................................................................................................................................................................................................................................................................................................................MKPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSHVCNDLKIGYECLCPDGFAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQTKACK.................................. 101
41 -13.5002qn5_B mol:protein length:133 Bowman-Birk type bran trypsin inhibitor  ali model follow..  17  6...........................................................................................................................................................................................................................................KCCDNIKRLPTKPDPP-QWRCNDELEPSQCTAACKSCREAPGPFPG-----------KLICEDIYWGADPGPFCTPRPWGDCCDKAFCNKMNPP-TCRCMDE--VKECADACKDCQRVESSEPP----------RYVCKDRFTG........................................................................................................................................................ 124
42 -13.2003g5c_A mol:protein length:510 ADAM 22  ali model follow..  18  159...........................................................................................................................................................ECKCEDTWSG--CIMGDTGYYLPKKFTQCNNSGGGACLFNKPSKLLDPPECGNGFIETGEECDCGTPAECVLE-GAECCKKCTLTQ---DSQCSDGLCCKCKFQPMGTVCREAVNDCDIRETCSGNSS-----------QCAPNIDGYSCDGVQGICFGGRCKTRDR----------QCKYIW-GQKVTASDKYCYEKLNIEGGNCGKDKDTWIQCNKRDVLCGYLCTNIGNI-ELDGEITSTLVVQQGRTLNCSGGHVKLEEDVDLGYVE-DGTPCGPQMMCLEH----RCLPVASFNFSTC---LSSKEGTICSGNGVCSNELK---CVCNRHWIGSDCNTY................................ 482
43 -13.2003sp8_A mol:protein length:264 Hepatocyte growth factor alpha chain  ali model follow..  10  2..............................................................................................................................................................................................................................................................SYAEGQRKRRNTIHEFKKSAKTTLIKID-------PALKIKTKKVNTADQCALPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGK------GRSYKGTVSITKSDIKCQPSSMIPHEHSFLPSSYRGKDLQENYCRNPRG-GGPWCEVRYEVCDIPQCSEVECMTSNGESYRGLMDHTESGKICQRWDHQTPHRHKFLPERYPDKGFDDNCRNPDGQPRPWCHTRWEYCKIKTCK...................... 264
44 -13.1003gis_X mol:protein length:121 Thrombomodulin  ali model follow..  22  3.........................................................................................................................................................................................................................................................................................................................................................PVDPCFRANCEY--QCQPLNQTSYLCVCAEGFAPIPHEPHRCQLFCNQTACPADC-DPNTQASCECPEGYDGFICT-DIDECENGG---SGVCHNLPGTFECICGPDSA............................................................................. 109
45 -12.9001egf_A mol:protein length:53 EPIDERMAL GROWTH FACTOR  ali model follow..  24  1..................................................................................................................................................................................................................................................................................................................................................................................................................................NSYPGCPSSYDGYCLNGGVCIESLDSYTCNCVIGYSGDRCQTRDLRWWE................................................................ 51
46 -12.7003r05_A mol:protein length:1254 Neurexin-1-alpha  ali model follow..  11  190..........GEEGEGGVCLNGGVCSVVDDQAVCDCSTGFRGKDCSQGKE----------EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMG-------CLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLD-------PITFETPESFISLPKWNAKRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYDMGSGTIKIKALQKKVNDG-DGRSGTISVNTLRTPYTAPGESEILDLDDEL-------YLGGLPENKAGLVFPTEVWTALL------------NYGYVG---------CIRDLFID-GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSTGYLGRSCEREATVLSYDPVVMHTEAEDVSLRFRSQRAYGIL. 697
47 -12.6001n1i_A mol:protein length:105 Merozoite surface protein-1  ali model follow..  24  3..................................................................................................................................................................................................................................................................................................................................................EASNMS-SAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKGGKCVPASITCEENNCAPEAECTMDDKEVECKCTKEGSE.................................................................................................................. 85
48 -12.6004wnx_A mol:protein length:433 Netrin-4  ali model follow..  23  230..........................................................................................................................................................................................KGSCFCNG--HADQCLPVEGFRPIKAPGAFHVVHGRCMCKHNTAGSHCQH-------------------CAPLYNDRPWEAADGRTGAPNECR-------------TCKCNG--HADTCHFDVNVWEASGNRSGGVCNN--------CQHNTEGQHCQ----RCKPGFYRDLRRPFSAPDACKACSCHP-----------VGSAILPFSSVTFCDPSNG--DCPCKPGVAGPHCDR---------CMVGYWGFGDYGCRPCDC-----AGSCDPLTGDC.................................................................. 433
49 -12.4004ux8_C mol:protein length:463 GDNF FAMILY RECEPTOR ALPHA-1  ali model follow..  11  28........................................................................................................................................................................................................................................DCVKASD-------QCLKEQSCSTKYRTLRQCVAGKETNFSLTSGLEAKDECRSAQKSLYNCRCKGMKKEKNCLRKGNNCAAKACNLDDTCKKYRSAYITPCTTSMSNEVCNRR--KCHKA--FFDKVPAKHSYGMLFCSC----RDIACTERRRQTIVPVCSYEERERPNCLSLQDSCK---TNYICRSRLTNCQPESRSVSNCLKEN----YADCLLAYSGLIGT----VMTPNYVDSSSLSVAP----WCDCSSGNDLEDCLKFLNFFKDNTCLKNAI.................. 337
50 -12.4001dx5_I mol:protein length:118 THROMBOMODULIN  ali model follow..  22  3.........................................................................................................................................................................................................................................................................................................................................................PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYDGFICT-DIDECEGGFCSG--VCHNLPGTFECICGPDSA............................................................................. 109
51 -12.3001fsb_A mol:protein length:40 P-SELECTIN  ali model follow..  22  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRE.............................. 40
52 -12.0001cej_A mol:protein length:96 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  20  1.......................................................................................................................................................................................................................................................................................................................................................NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQETCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSGIFCS.............................................................................................................. 93
53 -11.8001b9w_A mol:protein length:95 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  21  3...................................................................................................................................................................................................................................................................................................................SEHRCIDTNVPENAACYRYDGTEEWRCLLYFKAGKCPAPNMTCKDKNCAPEAECKMNDKNEIVCKCTKEGSGVFCS.................................................................................................................................................... 89
54 -11.8001lmj_A mol:protein length:86 fibrillin 1  ali model follow..  33  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................TDIDECRISPCGR-GQCVNTPGDFECKCDEGYMMKNCM-DIDECQRDPLCRGGVCHNTEGSYRCECPPGHQISAC................................... 85
55 -11.8001gl4_A mol:protein length:285 NIDOGEN-1  ali model follow..  17  2.............................................................................................................................................................................................................................................................................................................................................................................................PL-AQQTCANNQCSVHAECRDYATGFCCRCVANYTGRQCVAEGSP-GKVKGRIFVGSSQVPVVFENTDLHSYVVMNSYTAISTIPETYSLLPLAPIGGIIGWMFAVEQDGFGFSIT.................................. 130
56 -11.7003l95_X mol:protein length:244 Neurogenic locus notch homolog protein 1  ali model follow..  13  1......................................................................................................................................................................................................................................GSACELPECQEDAGNKVCSLQ-CNNHACGWDGGDCSLNFNDPWKN---------------TQSLQCWKYFSDGHCD---SQCNSAGCLFDG----------FDCQRAEGQCNPLYDQ----CKDHFSDGHCDQG-----CNSAECEWDGLDCAEHV---PERLAAGTLVVVVLMPPEQLRFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYGDVRGSIVYLEIDNRQCVQASSQCFQSA.............................................................. 203
57 -11.7002npr_A mol:protein length:90 Merozoite surface protein 1  ali model follow..  25  4.........................................................................................................................................................................................................................................................................................................................................................SEHTCIDTNVPDNAACYRYLDGTEEWRCLLTFKGGKCPASNVTCKDNNCAPEAECKMTSNKIVCKCTKEGSE.................................................................................................................. 81
58 -11.5005e6v_A mol:protein length:224 Integrin beta-2  ali model follow..  11  1...........................................................................................................................................................................................................EECTKFKVSSCRECIE----------SGPGCTWCQKLNFTGPGDPDSI-RCDTRPQLLMRGCAADTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE------ICRCDTGYIGKNCEHH............................................................................................................ 223
59 -11.5001ob1_C mol:protein length:99 MAJOR MEROZOITE SURFACE PROTEIN  ali model follow..  20  1.......................................................................................................................................................................................................................................................................................................................................................NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQETCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSGIFCS.............................................................................................................. 93
60 -11.4002mgp_A mol:protein length:99 Merozoite surface protein 1  ali model follow..  24  8...............................................................................................................................................................................................................................................................................CVDTRDIPKNAGCFRDDDGTEEWRCLLGYKKPTCDINNGGCDPTASCQNAESTENSKKIICTCKEPTPGVFCS........................................................................................................................................................................................... 96
61 -11.4004neh_B mol:protein length:686 Integrin beta-2  ali model follow..  21  359..........................................................................................................................................................................................TYDSFCSNGVTHRNQPRGDCDGNVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQC----ECRCRD------QSRDRSLCHGKGFLECG-----------ICRCDTGYIGKNCECQTQG-NSIICSGLGDCV------QCLCHTSIYGQYCECDTINC---ERYNGQVCGGPGRGL-KCRCHPGFEGSACQRTTEGCLNPRCSGRGRCR------VCECHSGYQLPLCQE---PGCPSPCGKYISCAE------LKFEKGPFGKNCSAA--------CPGLQLSNNPVKGRTCK............................................. 641
62 -11.3002mgr_A mol:protein length:99 Merozoite surface protein 1  ali model follow..  23  8...............................................................................................................................................................................................................................................................................CVDTRDIPKNAGCFRDDDGTKEWRCLLGYKKGEGNNNNPTCDINNCDPTASCQNAESTIICTCKEPTPNAYYE........................................................................................................................................................................................... 91
63 -11.2003h5c_B mol:protein length:317 Vitamin K-dependent protein Z  ali model follow..  18  6..................................................................................................................................................................................................................................................................................................................................................................................................SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECRTDGCQH--FCLPGQESYTCSCAQGYRHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVI--IRENFVLTTAKCSLLHRNIT......... 144
64 -11.2004ove_A mol:protein length:437 Netrin-1  ali model follow..  17  154....................................................................................................................................................................................................................................FYSTQCRKMYNRPHRAPITKQNEQEAVCTDSHTDM------------RPLSGGLIAFSTLDGDNSPVLQDWVTATDIRVAFSRLHTFGDENEDDSELARDSYYYAVSDLQVGGRCK-----CNG----HAARCVRDRDDSLVCDCRHNTAGPEC----DRCKPFHYDRPWQRATAREANECVCNCNLHARRCRFNMELYKLSGRKSGGVCLN--------CRHNTAGRHCHYHRKACKACDCHPVGACNQTTG--QCPCKDGVTGITC----NRCAKGYQQSRSPIAP------CIKIP.... 433
65 -11.1003zyj_B mol:protein length:426 NETRIN-G1  ali model follow..  17  296....................................................................................................................................................................................................................................................................................................RCKCNL--------------------HATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACISISSIGTNVCDNELLHCQNGGTCHNNVR--------CLCPAAYTGILCE----KLR---CEEAGSCGSDSG--QGAPPHG............................................................................... 419
66 -10.9004um8_B mol:protein length:788 INTEGRIN BETA-6  ali model follow..  18  373......................................................................................................................................................................................................................................................................SEVELEVLGDTEGLNLSFTAICNNGTLFQHQKKCSHMKVGDTASFSVTVNIPHCERRSRHIIIKPVGLGCNC-------DCQKEVEVNSSKCHHGNGSFQ-------VCACHPGHMGPRCECGEDMLSTDSCSGRGDCY------QCICHLSIYGPYCQCDNFSCVRHKCGGNGDCDCG----ECVCRSGWTGEYCNTSTDSCVSEDCSGRGDCV------KCVCNPGASGPTCER---PTCGDPCNSKRSCIE............... 632
67 -10.8002p26_A mol:protein length:280 Integrin beta-2  ali model follow..  13  1...........................................................................................................................................................................................................QECTKFKVSSCRECIE----------SGPGCTWCQKLNFTGPGDPDSI-RCDTRPQLLMRGCAADTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE------ICRCDTGYIGKNCECQTQSCRKDNCSGLGDCVCG----QCLCHTSIYGQYCE........................................................................ 274
68 -10.8001gk5_A mol:protein length:49 MEGF/TGFALPHA44-50 CHIMERA  ali model follow..  26  1..................................................................................................................................................................................................................................................................................................................................................................................................................................NSYPGCPSSYDGYCLNGGVCIESLDSYTCNCVIGYSGDRCE........................................................................ 43
69 -10.8001z6c_A mol:protein length:87 Vitamin K-dependent protein S  ali model follow..  25  1...............................................................................................................................................................................................................................................................................................................................................................................................KDVDECSLKP--GTAVCKNIPGDFECECPEGYRSKSCE-DIDECSENMCAQ--LCVNYPGGYTCYCDGK-KGFKLAQDQKSCEV................................................................ 85
70 -10.7004zxb_E mol:protein length:894 Insulin receptor  ali model follow..  14  3........................................................................................................................................................................................................................................YPGECPGMDIRNNLTRLHELECSVIEGHTDYL-LESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE-CL--GNCSQPDDPTKCACRNFYLDGRC---VETCQDWRCVNFSFCQD-------------LHHKCKNSRRQGCHQYVIHNNKCIP-------ECPSGYTNLLCTPCLGPCPKV-CHLLESVTSAQELRGCTVINGSLI 341
71 -10.7004plm_A mol:protein length:432 Netrin-1  ali model follow..  17  153....................................................................................................................................................................................................................................FYSTQCRKMYNKPSRAAITKQNEQEAICTDSHTDV------------RPLSGGLIAFSTLDGDNSPVLQDWVTATDIKVTFSRLHTFGDENEDDSELARDSYFYAVSDLQVGGRCK-----CNG----HASRCVRDRDDNLVCDCKHNTAGPECD----RCKPFHYDRPWQRATAREANECVCNCNLHARRCRFNMELYKLSGRKSGGVCLN--------CRHNTAGRHCHYHRKACKECDCHPVGACNQTTG--QCPCKDGVTGITC----NRCAKGYQQSRSPIAP------CIKIP.... 432
72 -10.6002wgc_A mol:protein length:171 WHEAT GERM LECTIN  ali model follow..  19  2..............................................................................................................................................................................................RCGEQGSNMECPNNLC----CSQYGYCGMG-GDYCGKGCQNGACWTSKRCGSQAGGATCPNNHCCSQYGHCGFGAEYGGKLCPNNLCCSQWGFC-----GLGSEFCGGGCQSGACSTDK---PCGKDAGGRVCTNN----YCCSKWGSCGIGPGYCGAGCQSGGC................................................................................................................................................................................ 169
73 -10.6003ltf_D mol:protein length:58 Protein spitz  ali model follow..  23  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................FPTYKCP---ETFDAWYCLNDAHCFADLPVYSCECAIGFMGQRCEYKEIDNTYLP........................ 57
74 -10.4003hn4_A mol:protein length:264 Hepatocyte growth factor  ali model follow..  11  2..............................................................................................................................................................................................................................................................SYAEGQRKRRNTIHEFKKSAKTTLIKIDP-------ALKIKTKKVNTADQCALPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGE------GESYKGTVSITKSGIKCQPSSMIPHEHSFLPSSYRGKDLQENYCRNPRG-GGPWCEVRYEVCDIPQCSEVECMTANGESYRGLMDHTESGKICQRWDHQTPHRHKFLPERYPDKGFDDNCRNPDGQPRPWCHTRWEYCAIKTC....................... 263
75 -10.4004urt_A mol:protein length:420 NETRIN-1  ali model follow..  17  138....................................................................................................................................................................................................................................FYSTQCRKMYNRPHRAPITKQNEQEAVCTDSHTDM------------RPLSGGLIAFSTLDGDNSPVLQDWVTATDIRVAFSRLHTFGDENEDDSELARDSYFYAVSDLQVGGRCK-----CNG----HAARCVRDRDDSLVCDCRHNTAGPEC----DRCKPFHYDRPWQRATAREANECVCNCNLHARRCRFNMELYKLSGRKSGGVC--------LNCRHNTAGRHCHYHRKACKACDCHPVGACNQTTG--QCPCKDGVTGITC----NRCAKGYQQSRSPIAP------CIK...... 415

FFAS is supported by the NIH grant R01-GM087218-01
1 1 1 6 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.