current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: 4neh_B mol:protein length:686 Integrin beta-2, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .
# Score Template Links and tools%idFirst QECTKFKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRKVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECCGGPAALQTLFQGLast
1 -185.0004neh_B mol:protein length:686 Integrin beta-2  ali model  100  1QECTKFKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRKVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECCGGPAALQTLFQG 686
2 -178.0005es4_B mol:protein length:727 Integrin beta-2  ali model follow..  98  1QECTKFKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVDGCGLENLY... 683
3 -161.0004um8_B mol:protein length:788 INTEGRIN BETA-6  ali model follow..  37  21GGCALGGAETCEDCLLIGPQCAWCAQENFTHPSGVGE-RCDTPANLLAKGCQLNFIENPVSQVEILKNKPLSVVQIAPQSLILKLRPGGAQTLQVHVRQTEDYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNSLHLLVFVSDADSHFGMDSKLAGIVCPNDGLCHLDKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVGLLQKDSGNILQLIISAYEELRSEVELEVLGDTEGLNLSFTAICNNGTLFQH--QKKCSHMKVGDTASFSVTVNIPHCERSRHIIIKPVGLGDALELLVSPECNCDCQKEVNSSKCHHGNGSFQCGVCACHPGHMGPRCECGEDMLS----TDSCKEAPDHPSCSGRGDCYCGQCICHLS--PYGNIYGPYCQCDNFSCVRHKGLLCGG--NGDCDCGECVCRSGWTGEYCNCTTSTDSCVSEDGVLCSGRGDCVCGKCVCTNGASGPTCERCPTCGDPCNSKRSCIECHLSAAGQAREECVDKCKLAGATISKDGSVSCSLQGENECLITFLITT-DNEGKTIIHSINEKDCPKPPNIPMIMLG. 714
4 -157.0004g1e_B mol:protein length:738 Integrin beta-3  ali model follow..  39  3NICTTRGVSSCQQCLAVSPMCAWCSDEALP----LGSPRCDLKENLLKDNCAPESIEFPVSEARVLEDRPLSDTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPG--LKSCMGLKIGDTVSFSIEAKVRGCPQEKSFTIKPVGFKDSLIVQVTFDCDCACQAQPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDE-CSPREGQPVCSQRGECLCGQCVCHSSDFGK--ITGKYCECDDFSCVRYKGEMCSG--HGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALENTCNRYCRDEIESVKELDAVNCTYKNEDDCVVRFQYYEDSS-GKSILYVVEEPECPKGPESMENLYF. 699
5 -126.0005e6r_B mol:protein length:510 Integrin beta-2  ali model follow..  91  1QECTKFKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRKVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEPAAL----------QTLFQGPLGAQGKKKLALKKKNAQLK------WKLQALKKKLAQA....................................................................................................................................................................... 504
6 -121.0003v4p_B mol:protein length:503 Integrin beta-7  ali model follow..  51  22MLGSCQPAPSCQKCILSHPSCAWCKQLNFTASGEAEARRCARREELLARGCPLEELEEPRGQQEVLQDQPLSQTQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYESQCEGPEKGKAEDRGQCNHVRINQTVTFWVSLQATHCLPEPHLRLRALGFSEELIVELHTLCDCNCSDTQPAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLENLYFQ........................................................................................................................................................................................................................ 503
7 -119.0003vi3_B mol:protein length:454 Integrin beta-1  ali model follow..  50  5NRCLKANAKSCGECIQAGPNCGWCTNSTFLQEGMPTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNHQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTS-EQNCTTPFSYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCPKKDSFKIRPLGFTEEVEVILQYICECEGGLENLYFQ........................................................................................................................................................................................................................................................... 454
8 -112.0004um9_B mol:protein length:483 INTEGRIN BETA-6  ali model follow..  37  4GGCALGGAETCEDCLLIGPQCAWCAQENFTHPSGVGE-RCDTPANLLAKGCQLNFIENPVSQVEILKNKPLSVVQIAPQSLILKLRPGGAQTLQVHVRQTEDYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNSLHLLVFVSDADSHFGMDSKLAGIVCPNDGLCHLDSNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVGLLQKDSGNILQLIISAYEELRSEVELEVLGDTEGLNLSFTA--------------------------------------------------------------------------ICNNGTLFQHQKKCSHMKVGDTASFSVTVNIPH--------------CERRSRHIIIKPVGLGDAL--ELLVSPECNCDCQKE----------------------------------------VEVNSSKCHNGNGSFQCGVCACHPGHMGPRCE-SRGLQTLFQ..................................................................................... 483
9 -79.4002iue_A mol:protein length:212 PACTOLUS I-DOMAIN  ali model follow..  62  1.....................................................................................................DNSVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVN----------------------------MTFQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGELSDDSSNVAQLIRNAYSKL......................................................................................................................................................................................................................................................................................................................................................... 212
10 -47.1005e6w_A mol:protein length:317 Integrin beta-2  ali model follow..  74  17................................................................................................................................................................................................................................................................SGPGCTWCQKLNGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFN-VTFRRAKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ...................................................................................................................................... 313
11 -43.8002p26_A mol:protein length:280 Integrin beta-2  ali model follow..  70  17................................................................................................................................................................................................................................................................SGPGCTWCQKLNGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVT-FRRAKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCE............................................................................................................................................................................. 274
12 -31.1005e6v_A mol:protein length:224 Integrin beta-2  ali model follow..  91  1EECTKFKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYSRVFLDHNALPDTLK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEHHH............................................................................................................................................................................................................................... 224
13 -18.2002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model follow..  16  1.....................................................................................................................................................................................................................................................................................................................................ETGSLYLWIDAHQARVLIGFEEDILIVSEGKMAPFTHDFRKAQQRMPAIPVNIHSMNFTWQAAGQAEYFYEFLSLRSLDKGI----------------MADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFTILKTPQNAIFFKTCQQAECPGGCRNGGFCN-RICECPDG------FHGPHCEKALCTPRCMNGGLCVTP-------GFCICPPGFYGVNCDKANCSTT--------CFNGGTCF-GKCICPPGLEGEQCEI-SKCPQPCRNGGKCIG-CKCSKGYQGDLCSKPVCEPGCG----AHGTCHEPNKCQCQEGWH................................. 302
14 -13.9004cbz_A mol:protein length:312 PROTEIN JAGGED-1  ali model follow..  22  143...........................................................................................................................................................................................................................................................................................................................................................................................................................TGVAHFEYQIRVTCDCNKFCRPRDDFFGHYACD-GNKTCMEGWMGPECNRAICRQGC---------------SPKHGSCK-GDCRCQYG------WQGLYCDCIPHPGC----------VHGICNEPQCLCETNWGGQLCDKDLNYCGTHQP----CLNGGTCS--QCSCPEGYSGPNCE............................................................................................... 303
15 -13.8004xlw_B mol:protein length:261 Delta-like protein  ali model follow..  26  147..............................................................................................................................................................................................................................................................................................................................................................................................................................................................RVVCSDNYYGDSCSRLCKKRDD---------------HFGHYECQ-GSPSCLPG------WTGKYCDCLSGCHE----------QNGYCKPDECNCRPGWQGPLCNECIPHKGC---------RHGTCTIPQCACDEGWGGLFCDQAAA........................................................................................... 261
16 -13.6002m74_A mol:protein length:136 Fibrillin-1  ali model follow..  20  8.................................................................................................................................................................................................................................................................................................................................................................................................................................................HDALKGPNVCG-YNAYCCPGWKTLPGG------------NQCIVPICRHSCGDGFCSRPNMCTCPSG------QIAPSCGSRSIQHCNIR-----CMNGGSCSDDHCLCQKGYIGTHCGQPVCESG--------CLNGGRCV-NRCACTYGFTGPQCE............................................................................................... 136
17 -13.4004k0v_A mol:protein length:529 TEK tyrosine kinase variant  ali model follow..  18  198......................................................................................................................................................................................................................................................................................................................................................................................................................................CNHLC-------TACMNNGVCH-GECICPPGFMGRTCECEL-HTFGRTCKERC---SGQEGCKSYVFCL-YGCSCATG------WKGLQCNCHPGFYGPDCKLRCSCNNGEMCD-QGCLCSPGWQGLQCEREGIPKIVDLPDHIEVNGKFNPICGVWVCSVNTVAGMVE--KPFNISVKVLPKPLNANVIDTGHNFAVINISSE............................................................ 446
18 -12.4004xl1_B mol:protein length:230 Delta-like protein  ali model follow..  12  6................................................................................................................................................................................................................................................................................................................................................................................................................................FQLRLQEFANERGMLANGRPCEPGCRTFFRICLKHYQATFSEGPCTFGNVSTPVLGTNSFVIRDKNSGSGRNPLQLPLNFTWPGTFSNSLISQIIIQGSLAVGKNWKSDEQNNTLTRLRYSYRVVCSDNYYGDSCSRLCKKRDD-------HFGHYECQ-GSPSCLPGWTGKYCDQPICLSGCHEQNGYCSK-CNCRPGWQGPLCNEAA............................................................. 230
19 -12.4002vj2_A mol:protein length:169 JAGGED-1  ali model follow..  21  1..........................................................................................................................................................................................................................................................................................................................................................................................................................MRGSGSIEGRSAVTCGCNKFCRPRDDFFGHYACD-GNKTCMEGWMGPECNRAICRQGC---------------SPKHGSCKLPDCRCQYG------WQGLYCDCIPHPGC----------VHGICNEPQCLCETNWGGQLCDKDLNYCGTHQP----CLNGGTCS--QCSCPEGYSGPNCE............................................................................................... 162
20 -12.3005fma_A mol:protein length:154 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  22  5................................................................................................................................................................................................................................................................................................................................................................................................................................................ASNPCANGGQCLPFICHCPPSFHGPTCRQDVNE------------GEKPGLCRHGGTCHNERCVCRAT------HTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCE--ENIDDCPGNN---CKNGGACVDGNCRCPPEWTGQYCTE.............................................................................................. 154
21 -12.2001k7t_A mol:protein length:186 agglutinin isolectin 3  ali model follow..  19  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................ERCGEQGSGMECPNNLCCSQYGYCGDYCGCQNGACWTSKRCGSQAGGPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCD--GVFAEAIATNSTLLA.............................................................................. 185
22 -12.2005fm9_A mol:protein length:157 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  21  8................................................................................................................................................................................................................................................................................................................................................................................................................................................ASNPCANGGQCLPFECHCPPSFHGPTCRQDVNE------------GQKPGLCRHGGTCHNERCVCRAT------HTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCE--ENIDDCPGNN---CKNGGACVDGNCRCPPEWTGQYCTE.............................................................................................. 157
23 -12.0001wgc_A mol:protein length:171 WHEAT GERM LECTIN  ali model follow..  20  2.......................................................................................................................................................................................................................................................................................................................................................................................................................................RCGEQGSNMECPNCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATC----TNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCS--QWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGTNNYCCSKWGSCGIGPGYCGAGCQSGGCD............................................................................................... 170
24 -11.4004xbm_A mol:protein length:531 Delta-like protein 1  ali model follow..  21  187......................................................................................................................................................................................................................................................................................................................................................................RGEKVCNPGWKGPYCTEPICLP---GCDEQHGFCDKPGECKCRVGWQGRYCDECIRYPGCLHGTCQCNCQECNQDLNYCTHHKPCKNGTCSCRPGYTGATCELGIDE--------------DPSPCKNGGSCT--SCTCPPG------FYGKICELSAMTCPCFNGGRCSDSPDGG----SCRCPVGYSGFNCE--KKIDYCSSSP---CSNGAKCV--LCRCQAGFSGRHCDD-DCASSPCANGGTCRD-CTCPPGYTGRNCSAPCHNGATCHQRGHGYVCE............................................. 486
25 -11.3004aqs_A mol:protein length:525 LAMININ SUBUNIT BETA-1  ali model follow..  15  8...................................................................................................................................................................EFSYGC--AEGSCYPATG------LIGRAQKLSVTSTCGLHKPEPYCIVSHLQEDKKCFICDSRDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGQLDLEAEFHFTHLIMTFKTFRPAAMLIERSS----FGKAWGVYRYFYDCESSFPGISTGPMKKDDIICDSRYSDIEPSTEGEVIFRALDPAFKIEDPYSPRIQNLLKITNLR------------IKFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCECMDAEGRNSNACKKCNCNEHSSSCHSGGVCDCEQCKPFYFQHPERDIRDPNCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDCKEGFYDLSAEDPYGCK---SCACGYCYCKRLVTGQRCDQCPQHWGLSNDLDGCRPCDCDLGGALNNSCSE............................................................... 507
26 -10.3002wgc_A mol:protein length:171 WHEAT GERM LECTIN  ali model follow..  20  2.......................................................................................................................................................................................................................................................................................................................................................................................................................................RCGEQGSNMECPNCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATC----PNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQSGGKLCPNNLCCS--QWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGTNNYCCSKWGSCGIGPGYCGAGCQSGGCDA.............................................................................................. 171
27 -10.2002qn5_B mol:protein length:133 Bowman-Birk type bran trypsin inhibitor  ali model follow..  16  12....................................................................................................................................................................................................................................................................................................................................................................................................................................................KRLPTKPDPPQWRCNDELEPSQCTAACKS------------------CREAPGPFPGKLICEDI------YWGADP-----------GPFCTPRPWGDC-CDKAFCNKMNPPT-CRCMDEVKECADACKD-CQRVESSEPPRYVCKDRFTGHPGPVC............................................................................................. 130
28 -10.1004d90_A mol:protein length:143 EGF-like repeat and discoidin I-like domain-c  ali model follow..  25  4................................................................................................................................................................................................................................................................................................................................................................................................................................................DPNPCENGGICLPGLCECPDGFTDPNCSSVVEVASDEEEP------------TSAGPCTPNPCH-----------NGGTCEISEAYRGDTFIGY------------VCKCPRGFNGIHCQ--HNINECEVEP---CKNGGICTDLSCECPGEFMGRNCQ............................................................................................... 132
29 -9.8404z80_A mol:protein length:508 EGF family domain-containing protein  ali model follow..  3..................................................AMGSSTSTSRATY-------MDRFNIPKNHVDLIWDKDGTKSHT-----------------NTTYRWTE----------------RKSNVGVYVGYSEMYDSSAQAYCQSSSAKIDT-KTTVGAAC-PNYG-KVIAFTKRDGSRSDMTRWKNEIHANMPHSTTSC-----------------ASRADPGAAEVAKSIEGFAMYAGYLT----HCPYNVNVYRQDMVTDKEFDSTVCNFVTESN-----PLRFLDTTQRQSTQPYTEYAFHGKGGHKGYDYKGQTSHVGCPPYNPPHVTKGMKDSS-WITGPFECSILSRCTTHCWPYKSGGNCFRSLPAMFDMSTGECRLLGYHTQDFRSST------------AELTTDDTNAFYCVRPMKTAASSTKCPPREPLKNVRWGVVSKGKYCKP---MNARASLSNATAEQCG-SSADGSSLSSQVRGYHWATFVATD-----------CNMGESCAATARGKCFFYSTVPECLIHSPTTMAFTSLSAVCGAHGTCDVAKCVCEPGFTGERCDAAALVP......................................................................................... 507
30 -9.6104gk9_A mol:protein length:279 agglutinin (BOA)  ali model follow..  48.................................................................................................................................................................................................................................................................................................................................................................................................................................................NIKSGDGGRTLTGVGEGPIGFRATLTQSNTYAVENQW-------GGSSAPWHPGGTWV----------------IGCRVNQQVVALD------IESGDQGATLAGAGEGPIGFKSQQADGGVYAVENQWGSSAPWHNGGVWVIGAGEGPIGFKGNSVAQWGGTSAPWHPGGIWLLGCRSGQN---VELYITSGDNGNTFHGSMTYSG------EGPIGFR................................. 273
31 -9.1604fbr_A mol:protein length:267 Myxobacterial hemagglutinin  ali model follow..  10  37.................................................................................................................................................................................................................................................................................................................................................................................................................................................DIKSDDGGKTLKGTGEGPIGFRGTLSSANNYTVENQW-------GGTSAPWQPGGVWVLGSIKSNDGGKTLTGTTTYNGEGPI-----FKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGNGEGPIGFRGTLTSP-TVENQWGGSTAPWNPGGFWMIGARNGQNVVALN............................................................ 238

FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 2 1 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;