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anford Burnham Prebys Medical Discovery Institute
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Query: 2v3j_A mol:protein length:258 ESSENTIAL FOR MITOTIC GROWTH 1, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNILLast
1 -117.0002v3j_A mol:protein length:258 ESSENTIAL FOR MITOTIC GROWTH 1  ali model  100  1MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252
2 -97.1005fai_A mol:protein length:232 Ribosomal RNA small subunit methyltransferase  ali model follow..  52  2...........SGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKT------YELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVS--DVRELVPSSDPIVFVVGAFAHGKVSV--EYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI 232
3 -86.7003o7b_A mol:protein length:244 Ribosome biogenesis Nep1 RNA methyltransferas  ali model follow..  22  2....................SDITSLYKKVGENLYFQGMGSAFVFLEASLELIPQAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRD---FEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAGDT---TLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELL-----DGDVAVCIGAFPHGDFFEETLGEFKEVSLGTESYTSLYVTSRVLCEYERVRAH. 235
4 -85.1003bbd_A mol:protein length:205 Ribosome biogenesis protein NEP1-like  ali model follow..  26  2.......................................TYNIILAKSALELIPEEIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEI------NAKKIAIMTKTGKLTHPKLL-----KEYDTFIIGGFPYGKLKINKEGDIKEISIYNKGLMAWTVCGIICYSLS...... 204
5 -11.4002qwv_A mol:protein length:208 UPF0217 protein VC_A1059  ali model follow..  9..............................................................RSFILRARSAPTDSQRLLDEIGGKCHTEILAHCMMNFTAQSHREDVVIHLVLESTRDYSRTITVEANEISDVAALIALLVKALDASVGMGKEQTRVVQPGLTEALLGELAEHHSLYMMDKKGDSI------RDIKIGPNPCFILTPMPKKSGNSMKRLGVEKISLGPKMLFASQCVTLIHNEIDHQ.... 204
6 -11.1002qmm_A mol:protein length:197 UPF0217 protein AF_1056  ali model follow..  14  1...........................................................SNAVRGFLIVGNKAFTQPFSLNDLPGAGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPILIKGDEVRRMSPDERNVAGHIKKALAVECGKSWKKVHSGVYVSRKGLEELISEKYSIIYLKEDGVDI------SNAQLPPNPLFVIGGLTEEQEKVVERYAALKLSLSPLSLLAEQCVVIAHHHLDRL.... 195
7 -10.0003aia_A mol:protein length:211 UPF0217 protein MJ1640  ali model follow..  12  31....................................................................................SCGRLDLLCRCVSDAFSHDIRRDVVFYAVLYGQPNPPVCISELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSFRNLVLEKLEEGKNIYYLHMNGEDVENVDI-------ENPVFIIGGIGEEDERFLDEIKAKRISLSPLELHANHCITIIHNVLDKK.... 206
8 -9.9603ai9_X mol:protein length:211 UPF0217 protein MJ1640  ali model follow..  12  31....................................................................................SCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQVCIKFVGS-KVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSFRNLVLEKLEEGKNIYYLHMNGEDVENVDI-------ENPVFIIGGIGEEDERFLDEIKAKRISLSPLELHANHCMTMMHNVLDKK.... 206
9 -8.5001o6d_A mol:protein length:163 Hypothetical UPF0247 protein TM0844  ali model follow..  13  3...................................................................................................LRVRIAVIGKLDGFIKE-------------IKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEVSSEEFADFLKDGKDITILIGG-PYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKII 146
10 -8.1801ns5_A mol:protein length:155 Hypothetical protein ybeA  ali model follow..  13  25...................................................................................................................................RRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKN-RIVTLDIPGKPWDTPQLAAELERGRDVSLLIGG-PEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSIT 147

FFAS is supported by the NIH grant R01-GM087218-01
1 2 0 3 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.