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Query: 1nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTRIVGGQELast
1 -74.0001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model  100  1EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTRIVGGQE 195
2 -51.5001pfx_L mol:protein length:146 FACTOR IXA  ali model follow..  47  7EEFVRGNLERECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIK-NGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLTR...................................................... 146
3 -47.2001p0s_L mol:protein length:138 Coagulation factor X precursor  ali model follow..  100  6EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL............................................................... 137
4 -45.0001dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model follow..  47  6EELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQCVNENGGCEQYCSDHTGTRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEK----RNASKPQG................................................ 151
5 -41.2004xbm_A mol:protein length:531 Delta-like protein 1  ali model follow..  16  306ELGIDECDPSPCKNGGSCTDLENSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDSPGGYSCRCPVGYSGFNCEKKIDY-CSSSPCSNGAKCVDLGDAYLCRCQAGFSGRHCDDNVDDCASSPCANGGTCRDGVNDFSCTCPPGYTG-RNCSAPVSRCEHAPCHNGATCHQRGHGYVCECARSYGGPNCQFL 499
6 -40.7001fax_L mol:protein length:96 FACTOR XA  ali model follow..  98  1......................................YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACIPTGPYPCGKQTLER............................................................. 96
7 -40.4005fm9_A mol:protein length:157 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  20  2.......................................AQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTDVTHECACLPGFTG-QNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTE. 157
8 -40.0005fma_A mol:protein length:154 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  21  2..........................................DPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGEKGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTDVTHECACLPGFTGQN-CEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTE. 154
9 -37.9001aut_L mol:protein length:114 ACTIVATED PROTEIN C  ali model follow..  38  13........................................PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSH....................................................... 113
10 -37.2002vj3_A mol:protein length:135 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  20  10......LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDE-CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN................................................................ 133
11 -36.6004gk9_A mol:protein length:279 agglutinin (BOA)  ali model follow..  46......ALNIKSGDGGRTLTGTMTYVGEGPIGFRATLTQSNTYAGSSAPWHPGGTWVAGTMTYAGEGPIGFKSQQADGGVYAVGSSAPWHNGGVWVNGNMTYAGEGPIGFKGNSVAGNNYAGTSAPWHPGGIWLLGCRSGQNV----------------VELYITSGDNGNTFHGSMTYSGEGPIGFRAMALPQ. 279
12 -35.2004bxs_A mol:protein length:423 FACTOR X-LIKE PROTEASE  ali model follow..  42  6EEFKSGNIERECIEERCSKEEAREVFEDDEKTETFWNVYVDGDQCSSNPCHYRGICKDGIGSYTCTCLSGYEGKNCERVLYKSCRVDNGNCWHFCKHVQNDIQCSCAEGYLLGEDGHSCVAGGNFSCGRNIKTRNKREANLPDFVQSQNATLLKKSDNPSPDIR-IVNGMDCKLGECPWQAALVDEKEGVFCG.. 197
13 -34.7004xlw_A mol:protein length:124 Neurogenic locus notch homolog protein 1  ali model follow..  21  7......LGANPCEHAGKCLNTLGSFECQCLQGYTGPRCEIDVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEINTDE-CASSPCLHNGRCVDKINEFLCQCPKGFSGHLCQSGRLEVLF....................................................................... 123
14 -34.4004fbr_A mol:protein length:267 Myxobacterial hemagglutinin  ali model follow..  35......ALDIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTGTSAPWQPGGVWVTGTTTYNGEGPIGFKSEVTDGDTYSVNVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPG-----GFWMIGARNGQ-NVVALNVA----SSDGGKTLAGTMIYNGEGPIGFRARLG... 267
15 -32.4004d90_A mol:protein length:143 EGF-like repeat and discoidin I-like domain-c  ali model follow..  22  1..........................................DICDPNPCENGGICLPGLGSFSCECPDGFTDPNCSSVVEVACTPNPCHNGGTCEDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNC.......................................... 131
16 -32.0001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model follow..  75  6EEVKQGNLERECLEEACSLEEAREVFEDAEQTDEFWSKYKDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFSTR.................................................................................................................. 86
17 -29.9004cbz_A mol:protein length:312 PROTEIN JAGGED-1  ali model follow..  11  128GMINPSRQWQTLKQNTGVAHFEYQIRVTCDDYYYGFGCN---KFCRPRDDFFGHYACD--QNGNKTCMEGWMGPECNRAI---CRQGCSPKHGSCKL---PGDCRCQYGWQGL----YCDKCIPHPGCVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGDKYQCSCPEGYSGPNCEI. 304
18 -28.7003h5c_B mol:protein length:317 Vitamin K-dependent protein Z  ali model follow..  33  2......................................YKGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV-------LTSEKRAPDLQDLPWQVKLTNSEG................................... 116
19 -27.4002vj2_A mol:protein length:169 JAGGED-1  ali model follow..  13  3................GSGSIEGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACD--QNGNKTCMEGWMGPECNRAI---CRQGCSPKHGSCKL---PGDCRCQYGWQG----LYCDKCIPHPGCVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGDKYQCSCPEGYSGPNCE.. 162
20 -25.7001z1y_A mol:protein length:186 ookinete surface protein Pvs25  ali model follow..  16  1......................................EAEASAVTVDTICKNGQLVQMSNHFKCMCNEGLV-NECKKETLGKACGEFGQCENPDPAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECISEIQSAGCSCAIGKVEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFT....... 169
21 -24.8001uzj_A mol:protein length:162 FIBRILLIN-1  ali model follow..  15  1.......................................TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGN-CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSKAWGTPCEMCPAVNTSEYKILCPGGEGFRPITVILEDIDECQELPGLQGGKCINTFGSFQCRCPTGYY....... 153
22 -24.7004bdw_A mol:protein length:85 COAGULATION FACTOR XIIA HEAVY CHAIN  ali model follow..  13  2.....................................SEKCFEPQLLRFFHKNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDTAA.......................................................................... 85
23 -23.6004xlw_B mol:protein length:261 Delta-like protein  ali model follow..  128............................................KNWKSDEQNNTLTRLRYSYRVVCSDNYYGDSCSRL---CKKRDDHFGHYECQP---DGSPSCLPGWTGKYCDQPI--CLSGCHEQNGYCSKP---DECNCRPGWQGPLC-----NECIPHKGCRHGTCTI---PWQCACDEGWGGLFCDQA 259
24 -21.6001emn_A mol:protein length:82 FIBRILLIN  ali model follow..  24  3.......................................VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP................................................................................. 77
25 -21.4001lmj_A mol:protein length:86 fibrillin 1  ali model follow..  32  1.......................................TDIDECRISP-CGRGQCVNTPGDFECKCDEGYEMKNCM-DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC............................................................................ 85
26 -21.3001gl4_A mol:protein length:285 NIDOGEN-1  ali model follow..  11  3.......................................LAQQTCANNQCSVHAECRDYATGFCCRCVANYTGNVAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPSLLPLAPIGGIIGWMFAVEQDGFGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTI..... 166
27 -21.0002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model follow..  15  144KTCQQAECPGGCRNGGFCNERRI---CECPDGFHGPHCEK---ALCTPRCMNGGLCVT---PGFCICPPGFYGVNCDKANCS----TTCFNGGTCFY---PGKCICPPGLEGEQCEISK----PQPCRNGGKCIGK---SKCKCSKGYQGDLCS----KPVCEPGCGAHGTCHE---PNKCQCQEGWHGRHCNKR 309
28 -20.9002bo2_A mol:protein length:143 EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE  ali model follow..  16  5.......CARWCPQDSSCVNA---TACRCNPGFSSFETCDDINECATLSCGKFSDCWNTEGSYDCVCSPGYEENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC...................................................................... 142
29 -20.8001z6c_A mol:protein length:87 Vitamin K-dependent protein S  ali model follow..  26  1.......................................KDVDECSLKP-CGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQLCVNYPGGYTCYCKKGFKLAQDQKSCEVV......................................................................... 86
30 -20.7002w86_A mol:protein length:147 FIBRILLIN-1  ali model follow..  16  2.......................................ADIDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGT-------CWQTVIDGRCEININGATLKSQCCSSL------GAAWGSPCTLCQVDPICGKGYSRIKGTQEDIDECEVFPGVKNGLCVNTRGSFKCQCPSGMT....... 138
31 -20.7004k0v_A mol:protein length:529 TEK tyrosine kinase variant  ali model follow..  17  187..........................RRCEAQKWGPECN---HLCTA--CMNNGVCHEDTG--ECICPPGFMGRTCEKACELCSGQEGCKSYVFCLPDPYG--CSCATGWKGLQCNEACHP-LRCSCNNGEMCDRFQG---CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKAS......... 351
32 -20.6002w2m_E mol:protein length:107 LOW-DENSITY LIPOPROTEIN RECEPTOR  ali model follow..  19  1..................MKPMSDYDIPTTENLYFQGA-MGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK........................................................................... 101
33 -20.2004xl1_B mol:protein length:230 Delta-like protein  ali model follow..  15  146.......................SYRVVCSDNYYGDSCSRLCKK--RDDHFGHYECQP---DGSPSCLPGWTGKYCDQPI---CLSGCHEQNGYCSK---PDECNCRPGWQGPLCNEAA............................................................................ 230
34 -19.4003gcw_E mol:protein length:83 Low-density lipoprotein receptor  ali model follow..  23  4........................................GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK........................................................................... 83
35 -18.9002m74_A mol:protein length:136 Fibrillin-1  ali model follow..  10  8..............................................HDALKGPNVCGS---RYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRPN----MCTCPSGQIAPSCGSRSIQHCNIRCMNGGSCSDDH----CLCQKGYIGTHCG----QPVCESGCLNGGRCVAPN---RCACTYGFTGPQCE.. 136
36 -18.4001tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model follow..  24  17...QHQSWLRPVLRSNRVEY------CWCNSGRAQ-CHSVPVKSCSEPRCFNGGTCQQALSDFVCQCPEGFAGKSCEIDTR.................................................................................................................. 89
37 -18.3001f7e_A mol:protein length:46 PROTEIN (Blood Coagulation Factor VII)  ali model follow..  54  1.......................................SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA.............................................................................................................. 46
38 -18.0004wm0_D mol:protein length:50 Coagulation factor IX  ali model follow..  59  2.....................................DIVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELL.................................................................................................................... 43
39 -18.0001yo8_A mol:protein length:634 thrombospondin-2  ali model follow..  14  1.......................................ADPDGCLSNPCFPGAQCSSFPGSWSCFCPVGFLGNGTHEDLDECDICFSTSKVPRCVNTQPGFHCPCPPRYRGNQPVGVGLEAAKTNCHKHAECIYSDPMYKCECQTGYAG-DGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQED 183
40 -17.1001hre_A mol:protein length:67 HEREGULIN ALPHA  ali model follow..  19  1..................................GTSHLVKCAEKEKTFCVNGGECLSNPSRYLCKCQPGFTGARCTENVPM-KVQNQEKAEELYQK.................................................................................................. 67
41 -16.8001b9w_A mol:protein length:95 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  23  3........................................SEHRCIDTNVPENAACYRYLGTEEWRCLLYFDAGKCVPAPNMTCKDKNGGCEAECKMNKNEIVCKCTKEGS.................................................................................... 79
42 -16.7003asi_A mol:protein length:410 Neurexin-1-alpha  ali model follow..  19  153...........CLASVDLNGRLPDLISDALFCNGQIECEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSTSFSGPLCNDPGTTY................................................................................................................ 227
43 -16.6003v65_B mol:protein length:386 Low-density lipoprotein receptor-related prot  ali model follow..  24  1.......................................TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEP..................................................................... 88
44 -16.2002npr_A mol:protein length:90 Merozoite surface protein 1  ali model follow..  26  3.......................................SSEHTCIDTNVPDNAACYRYLGTEEWRCLLTFEGGKCVPASNVTCKDNNGGCAAECKMTSNKIVCKCTKEGSE................................................................................... 81
45 -16.2003gis_X mol:protein length:121 Thrombomodulin  ali model follow..  16  2.EPVDPCFRANC-EYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQLFCNQTACPADC-DPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDCD.......................................................................... 119
46 -16.0001cej_A mol:protein length:96 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  27  2.......................................ISQHQCVKKQCPQNSGCFRHLEREECKCLLNYEGDKCVENPNPTCNENNGGCDAKCTEEGKKITCECTKPDSYPLDGIFCSSS......................................................................... 95
47 -16.0001fsb_A mol:protein length:40 P-SELECTIN  ali model follow..  38  2..........................................ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRE.................................................................................................................. 40
48 -15.9002kl7_A mol:protein length:71 Fibulin-4  ali model follow..  20  1.......................................SDVNECLTIPCKGEMKCINHYGGYLCLPRSAAVINDLH------------GEGPPPPVPPAQHPNPCPPGYEPDDQDS.............................................................................. 68
49 -15.8002gd4_L mol:protein length:58 Coagulation factor X, Stuart factor, Stuart-P  ali model follow..  98  1...............................................................................MRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKR.......................................................... 58
50 -15.7001n1i_A mol:protein length:105 Merozoite surface protein-1  ali model follow..  19  9........................................SAHKCIDTNVPENAACYRYLGTEEWRCLLGFKGGKCVPASITCEENGGCAPEAECTMDKKEVECKCTKEGSELFEGVFCSSSSG....................................................................... 98
51 -15.7002ygo_A mol:protein length:188 WNT INHIBITORY FACTOR 1  ali model follow..  32  148..........................................QAECPGGCRNGGFCN---ERRICECPDGFHGPHCEGT.................................................................................................................... 181
52 -15.6001ob1_C mol:protein length:99 MAJOR MEROZOITE SURFACE PROTEIN  ali model follow..  29  2.......................................ISQHQCVKKQCPQNSGCFRHLEREECKCLLNYEGDKCVENPNPTCNENNGGCDAKCTEEGKKITCECTKPDS.................................................................................... 83
53 -15.5001egf_A mol:protein length:53 EPIDERMAL GROWTH FACTOR  ali model follow..  29  1....................................NSYPGCPSSYDGYCLNGGVCMESLDSYTCNCVIGYSGDRCQTRDLRWWELR............................................................................................................ 53
54 -15.2003kl6_B mol:protein length:57 Coagulation Factor X light chain  ali model follow..  100  5.................................................................................KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER............................................................. 57
55 -15.2002ra0_L mol:protein length:51 Coagulation factor X  ali model follow..  98  1..................................................................................VCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL............................................................... 50
56 -14.8001kig_L mol:protein length:51 FACTOR XA  ali model follow..  60  1...................................................................................CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFTQGR............................................................. 51
57 -14.8005edm_A mol:protein length:568 Prothrombin  ali model follow..  25  6EEVRKGNLERECVEETCSYEEAFEALESSTATDVFWAKYTACETDKLAACLEGNCAEGLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTMGPWCYTTDPTVRRQECSIPVCGQDQ.......................................................... 147
58 -14.8001dx5_I mol:protein length:118 THROMBOMODULIN  ali model follow..  21  3........................................PVDPCFRANCEY--QCQPLQTSYLCVCAEGFEPHRCQ------MFCNQTACPADC-DPNTQASCECPEGYIL-DDGFICTDIDE--CENGGVCHNLPGTFECICGPDS............................................... 108
59 -14.3004yzu_B mol:protein length:62 Coagulation factor IX  ali model follow..  41  1...............................................................................MDVTCNIKNGRCEQFCKNSANKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLT........................................................ 61
60 -14.2001dqb_A mol:protein length:83 THROMBOMODULIN  ali model follow..  25  3.......................................EPVDPCFRANCEY--QCQPNQTSYLCVCAEGFA--IPHEPHRCQMFCNQTACPADCDPN-TQASCECPEGYIL-DDGFICTDIDE....................................................................... 83
61 -13.9002mgr_A mol:protein length:99 Merozoite surface protein 1  ali model follow..  22  4........................................PKHVCVDRDIPKNAGCRDDDGTKEWRCLLGYKGNTCVENNNPTCDINNGGCTASCQNAESTIICTCKEPTPN................................................................................... 87
62 -13.9001nl0_G mol:protein length:51 factor IX  ali model follow..  59  7EEFVQGNLERECMEEKCSFEEAREVFENTERTTEFWKQYEEEEE....................................................................................................................................................... 50
63 -13.8001gk5_A mol:protein length:49 MEGF/TGFALPHA44-50 CHIMERA  ali model follow..  35  1....................................NSYPGCPSSYDGYCLNGGVCMESLDSYTCNCVIGYSGDRCEH..................................................................................................................... 44
64 -13.8005edk_A mol:protein length:560 Prothrombin  ali model follow..  25  6EEVRKGNLERECVEETCSYEEAFEALESSTATDVFWAKYTACETDKLAACLEGNCAEGLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTMGPWCYTTDPTVRRQECSIPVCGQEQ.......................................................... 147
65 -13.8001rfn_B mol:protein length:57 PROTEIN (COAGULATION FACTOR IX)  ali model follow..  46  3...................................................................................CNIKNGRCEQFCKNSANKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSK.......................................................... 57
66 -13.6002mgp_A mol:protein length:99 Merozoite surface protein 1  ali model follow..  25  4........................................PKHVCVDRDIPKNAGCRDDDGTEEWRCLLGYKGNTCVENNNPTCDINNGGCDASCQENSKKIICTCKEPTP.................................................................................... 86
67 -13.4003cfw_A mol:protein length:164 L-selectin  ali model follow..  20  80.EPNNKKNKEDCVEIYIKRNKDAGKWNDDAHKLKAALCYTA--SCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV.................................................................................................................. 158
68 -12.7001cfh_A mol:protein length:47 COAGULATION FACTOR IX  ali model follow..  65  7EEFVQGNLERECMEEKCSFEEAREVFENTERTTEFWKQYVD.......................................................................................................................................................... 47
69 -12.7002p26_A mol:protein length:280 Integrin beta-2  ali model follow..  24  185....................................ECRCRDQSRDRSLCHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQEL---EGSCRKDNNSIICSCVCG--------------QCLCHTSDVPGKLIYGQYCE.................................................... 274
70 -12.3001apq_A mol:protein length:53 COMPLEMENT PROTEASE C1R  ali model follow..  23  5.........................................................................DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ........................................................................... 51
71 -12.1003f1s_B mol:protein length:283 Vitamin K-dependent protein Z  ali model follow..  24  1..............................................................................AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV-------LTSEKRAPDLQDLPWQVKLTNSEG................................... 75
72 -12.0003ltf_D mol:protein length:58 Protein spitz  ali model follow..  30  9..........................................ETFDAWYCLNDAHCIADLPVYSCECAIGFMGQRCEYKEID................................................................................................................. 52
73 -12.0001j34_C mol:protein length:46 Coagulation factor IX  ali model follow..  65  7EEFVRGNLERECKEEKCSFEEAREVFENTEKTTEFWKQYV........................................................................................................................................................... 46
74 -11.9003r05_A mol:protein length:1254 Neurexin-1-alpha  ali model follow..  20  147REPFKGWIRDVRVNSS--VDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSTGFRGKDCSQGKE.................................................................................................................. 230
75 -11.8003s94_A mol:protein length:619 Low-density lipoprotein receptor-related prot  ali model follow..  30  571.................................................................................NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCIV.......................................................................... 610

FFAS is supported by the NIH grant R01-GM087218-01
1 1 7 8 9 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.