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Query: 1ivo_C mol:protein length:53 Epidermal growth factor, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDLKWWELRLast
1 -33.1001ivo_C mol:protein length:53 Epidermal growth factor  ali model  100  1NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDLKWWELR 53
2 -32.0001p9j_A mol:protein length:54 chimera of Epidermal growth factor(EGF) and T  ali model follow..  90  3SHFNDCPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDLKWWEL. 54
3 -27.5003u7u_G mol:protein length:55 Neuregulin 1  ali model follow..  22  3SHLVKCAEKEKTFCVNGGECFMVKDLSNPSCKCPNEFTGDRCQNYVMASF... 55
4 -26.0001gk5_A mol:protein length:49 MEGF/TGFALPHA44-50 CHIMERA  ali model follow..  61  1NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCEHADLLA.... 49
5 -26.0001mox_C mol:protein length:50 Transforming Growth Factor alpha  ali model follow..  41  3SHFNDCPDSHTQFCFH-GTCRFLVQEDKPACVCHSGYVGARCEHADLLA.... 50
6 -26.0001iox_A mol:protein length:50 Betacellulin  ali model follow..  37  3GHFSRCPKQYKHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCERVDLFY.... 50
7 -25.3001a3p_A mol:protein length:45 EPIDERMAL GROWTH FACTOR  ali model follow..  63  2....GAPSSYDGYCLNGGVAMHIESLDSYTCNCVIGYSGDRCQTRDLR..... 45
8 -25.0001egf_A mol:protein length:53 EPIDERMAL GROWTH FACTOR  ali model follow..  69  1NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDLRWWELR 53
9 -24.8005e8d_A mol:protein length:75 Proepiregulin  ali model follow..  41  30VSITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHFFL...... 75
10 -24.4002rnl_A mol:protein length:50 Amphiregulin  ali model follow..  36  7GKKNPCNAEFQNFCIH-GECKYIEHLEAVTCKCQQEYFGERCGEK........ 50
11 -24.3001xdt_R mol:protein length:79 HEPARIN-BINDING EPIDERMAL GROWTH FACTOR  ali model follow..  33  35KKRDPCLRKYKDFCIH-GECKYVKELRAPSCICHPGYHGERCHGLS....... 79
12 -20.6001hre_A mol:protein length:67 HEREGULIN ALPHA  ali model follow..  23  3SHLVKCAEKEKTFCVNGGECFMVKDLSNYLCKCQPGFTGARCTENVPMKVQ.. 56
13 -18.6003ltf_D mol:protein length:58 Protein spitz  ali model follow..  33  3.PTYKCPETFAWYCLNDAHCFAVKIADVYSCECAIGFMGQRCEYKEIDNTYL. 56
14 -13.4001tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model follow..  26  56.............CFNGGTCQQALYFSDFVCQCPEGFAGKSCE.......... 85
15 -12.1004bdw_A mol:protein length:85 COAGULATION FACTOR XIIA HEAVY CHAIN  ali model follow..  46  53.............CLHGGRC--LEVEGHRLCHCPVGYTGPFCD.......... 80
16 -12.1001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model follow..  35  55.............CLNQGHCK--DGIGDYTCTCAEGFEGKNCE.......... 82
17 -11.7002ygo_A mol:protein length:188 WNT INHIBITORY FACTOR 1  ali model follow..  29  155.............CRNGGFC-----NERRICECPDGFHGPHCEGT........ 181
18 -11.3001fsb_A mol:protein length:40 P-SELECTIN  ali model follow..  37  9.............CSKQGEC--LETIGNYTCSCYPGFYGPECEY......... 37
19 -11.3004wm0_D mol:protein length:50 Coagulation factor IX  ali model follow..  35  14.............CLNGGSC--KDDINSYECWCPFGFEGKNCE.......... 41
20 -11.3001fax_L mol:protein length:96 FACTOR XA  ali model follow..  34  5...DQCETS----CQNQGKC--KDGLGEYTCTCLEGFEGKNCE.......... 39
21 -11.1001f7e_A mol:protein length:46 PROTEIN (Blood Coagulation Factor VII)  ali model follow..  32  11.............CQNGGSC--KDQLQSYICFCLPAFEGRNCE.......... 38
22 -10.8004gk9_A mol:protein length:279 agglutinin (BOA)  ali model follow..  10  251.............SGDNGNT--FHGSMTYSGEGPIGFRAMALPQ......... 279
23 -10.6003asi_A mol:protein length:410 Neurexin-1-alpha  ali model follow..  26  186...TTCQEDS---CSNQGVC--LQQWDGFSCDCSTSFSGPLCNDP........ 223
24 -10.6004d90_A mol:protein length:143 EGF-like repeat and discoidin I-like domain-c  ali model follow..  26  8.............CENGGICLPGLADGSFSCECPDGFTDPNCS.......... 37
25 -10.5001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model follow..  34  43...DQCETS----CQNQGKC--KDGLGEYTCTCLEGFEGKNCE.......... 77
26 -10.5001pfx_L mol:protein length:146 FACTOR IXA  ali model follow..  31  46VDGDQCEPN----CLNGGLCK--DDINSYECWCQVGFEGKNCE.......... 83
27 -10.4004fbr_A mol:protein length:267 Myxobacterial hemagglutinin  ali model follow..  14  174.............SNDGGKT--LSGTMTYNGEGPIGFRGTLTS.......... 201
28 -10.4001aut_L mol:protein length:114 ACTIVATED PROTEIN C  ali model follow..  34  22.............CCGHGTC--IDGIGSFSCDCRSGWEGRFCQR......... 50
29 -10.3003cfw_A mol:protein length:164 L-selectin  ali model follow..  36  105.NDDACHKLKAALCYTAGEC--VEIINNYTCNCDVGYYGPQCQFV........ 156
30 -10.3001p0s_L mol:protein length:138 Coagulation factor X precursor  ali model follow..  35  55.............CQNQGKCK--DGLGEYTCTCLEGFEGKNCE.......... 82
31 -9.8801dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model follow..  28  45SDGDQCASS----CQNGGSCK--DQLQSYICFCLPAFEGRNCE.......... 82
32 -9.8404xlw_B mol:protein length:261 Delta-like protein  ali model follow..  22  223...PLCNECIPHKGCRHGTC-----TIPWQCACDEGWGGLFCD.......... 257
33 -9.4204xlw_A mol:protein length:124 Neurogenic locus notch homolog protein 1  ali model follow..  42  12.............CEHAGKC--LNTLGSFECQCLQGYTGPRCE.......... 39
34 -9.3604cbz_A mol:protein length:312 PROTEIN JAGGED-1  ali model follow..  43  275.............CLNGGTCS--TGPDKYQCSCPEGYSGPNCEIVD....... 306
35 -9.3404xl1_B mol:protein length:230 Delta-like protein  ali model follow..  27  191...KYCDQPLSGCHEQNGYC-----SKPDECNCRPGWQGPLCN.......... 227

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.