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Query: 1fax_L mol:protein length:96 FACTOR XA, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACIPTGPYPCGKQTLERLast
1 -46.8001fax_L mol:protein length:96 FACTOR XA  ali model  100  1YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 96
2 -42.1001p0s_L mol:protein length:138 Coagulation factor X precursor  ali model follow..  98  44YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL.. 137
3 -40.7001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model follow..  98  39YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134
4 -37.3001pfx_L mol:protein length:146 FACTOR IXA  ali model follow..  43  45YVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATC-NIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSH 139
5 -37.1001aut_L mol:protein length:114 ACTIVATED PROTEIN C  ali model follow..  38  12.LPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKR. 106
6 -33.8001dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model follow..  47  44YSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDICVNENGGCEQYCSDHTTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILE 142
7 -32.4004xlw_A mol:protein length:124 Neurogenic locus notch homolog protein 1  ali model follow..  27  1..DVDECAANPCEHAGKCLNTLGSFECQCLQGYTGPRCEIDVNE-CISNPCQNDATCLDQIGEFQCICMPGYEGVYCEINTDECASSPCLHNGRC. 94
8 -31.8003h5c_B mol:protein length:317 Vitamin K-dependent protein Z  ali model follow..  41  2YKGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV..... 92
9 -31.2002vj3_A mol:protein length:135 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  26  43.IDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDE-CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN... 133
10 -30.9005fm9_A mol:protein length:157 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  25  2.AQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTC. 96
11 -29.3005fma_A mol:protein length:154 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  26  2....DPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGEKGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTC. 93
12 -27.9004xbm_A mol:protein length:531 Delta-like protein 1  ali model follow..  31  422.DNVDDCASSPCANGGTCRDGVNDFSCTCPPGYTGRNCSAPVSR-CEHAPCHNGATCHQRGHGYVCECARSYGGPNCQFLLPELPPGPAVVDLTE. 514
13 -27.8004d90_A mol:protein length:143 EGF-like repeat and discoidin I-like domain-c  ali model follow..  27  1....DICDPNPCENGGICLPGLGSFSCECPDGFTDPNCSSVVEGPCTPNPCHNGGTCEDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGIC. 111
14 -26.9004bdw_A mol:protein length:85 COAGULATION FACTOR XIIA HEAVY CHAIN  ali model follow..  13  4.KCFEPQLLRFFHKNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDTAA............. 85
15 -25.8001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model follow..  12  14........ERECLEEACSLEEAREVFEDAEQTDEFWSKYKDGDQ-CEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFSTR.............. 86
16 -24.9004gk9_A mol:protein length:279 agglutinin (BOA)  ali model follow..  10  46......ALNIKSGDGGRTLTGTMTYVGEGPIGFRATLTQSNTYAGGSSAPWHPGGTWVAGTMTYAGEGPIGFKSQQADGGVYAGSSAPWHNGGVW. 168
17 -23.5004fbr_A mol:protein length:267 Myxobacterial hemagglutinin  ali model follow..  10  37........DIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVGTSAPWQPGGVWVTGTTTYNGEGPIGFKSEVTDGDTYSGSAAPWHSGGVW. 157
18 -23.2004bxs_A mol:protein length:423 FACTOR X-LIKE PROTEASE  ali model follow..  52  44YVDGDQCSSNPCHYRGICKDGIGSYTCTCLSGYEGKNCERVLYKSCRVDNGNCWHFCKHVQNDIQCSCAEGYLLGEDGHSCVAGGNFSCGR..... 134
19 -22.1001emn_A mol:protein length:82 FIBRILLIN  ali model follow..  24  3.VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP.................... 77
20 -21.4004cbz_A mol:protein length:312 PROTEIN JAGGED-1  ali model follow..  20  232....DKCIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNGPDKYQCSCPEGYSGPNCEIV................ 305
21 -20.8004xlw_B mol:protein length:261 Delta-like protein  ali model follow..  23  193..DQPICLSGCHEQNGYCSK---PDECNCRPGWQGPLCNE-----CIPHKGCRHGTCT---IPWQCACDEGWGGLFCDQAAA.............. 261
22 -20.5002vj2_A mol:protein length:169 JAGGED-1  ali model follow..  20  91....DKCIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNGPDKYQCSCPEGYSGPNCEI................. 163
23 -19.8001f7e_A mol:protein length:46 PROTEIN (Blood Coagulation Factor VII)  ali model follow..  58  1.SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD.................................................... 43
24 -19.5004wm0_D mol:protein length:50 Coagulation factor IX  ali model follow..  60  3IVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELL....................................................... 43
25 -18.9001gl4_A mol:protein length:285 NIDOGEN-1  ali model follow..  13  3.LAQQTCANNQCSVHAECRDYATGFCCRCVANYNGRQCVAEGSPQRVNGKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIP........ 95
26 -18.9001tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model follow..  19  14IYQQHQSWLRPVLRSNRV------EYCWCNSGRAQ--CHSVPVKSCSEPRCFNGGTCQQAFSDFVCQCPEGFAGKSCEIDTRAT............ 91
27 -18.7002bo2_A mol:protein length:143 EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE  ali model follow..  21  42.DDINECATLSCGKFSDCWNTEGSYDCVCSPGYEENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTV.......... 141
28 -18.2003asi_A mol:protein length:410 Neurexin-1-alpha  ali model follow..  27  186....TTCQEDSCSNQGVCLQQWDGFSCDCSTSFSGPLCNDPGTT.................................................... 226
29 -18.1001hre_A mol:protein length:67 HEREGULIN ALPHA  ali model follow..  20  6.VKCAEKEKTFCVNGGECLSNPSRYLCKCQPGFTGARCTENVPM-KVQNQEKAEELYQK..................................... 67
30 -18.0003gcw_E mol:protein length:83 Low-density lipoprotein receptor  ali model follow..  23  4..GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK.............. 83
31 -17.6001fsb_A mol:protein length:40 P-SELECTIN  ali model follow..  38  2....ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRE..................................................... 40
32 -17.6002w2m_E mol:protein length:107 LOW-DENSITY LIPOPROTEIN RECEPTOR  ali model follow..  23  22..GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK.............. 101
33 -17.5001z1y_A mol:protein length:186 ookinete surface protein Pvs25  ali model follow..  22  90..VLDVCQYKNCGESGECISEIQSAGCSCAIGKDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVC............... 177
34 -17.3004xl1_B mol:protein length:230 Delta-like protein  ali model follow..  21  157...GDSCSRDDHFGHYECQP---DGSPSCLPGWTGKYCDQPI---CLSGCHEQNGYCS---KPDECNCRPGWQGPLCNEAA............... 230
35 -17.3001lmj_A mol:protein length:86 fibrillin 1  ali model follow..  32  1.TDIDECRISP--GRGQCVNTPGDFECKCDEGYEMKNCM-DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC............... 85
36 -16.2001b9w_A mol:protein length:95 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  19  3..SEHRCIDTNVPENAACYRYLGTEEWRCLLYFDAGKCVPAPNMTCKDKNCAPEAECKMNKNEIVCKCTKEGS....................... 79
37 -16.1001z6c_A mol:protein length:87 Vitamin K-dependent protein S  ali model follow..  26  1.KDVDECSLKP--GTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQLCVNYPGGYTCYCKKGFKLAQDQKSCEV............. 85
38 -15.7003v65_B mol:protein length:386 Low-density lipoprotein receptor-related prot  ali model follow..  25  1.TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYREDGRTCQDVNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEP........ 88
39 -15.7001egf_A mol:protein length:53 EPIDERMAL GROWTH FACTOR  ali model follow..  27  4.PGCPSSYDGYCLNGGVCMESLDSYTCNCVIGYSGDRCQTRDLR.................................................... 48
40 -15.6002npr_A mol:protein length:90 Merozoite surface protein 1  ali model follow..  21  3.SSEHTCIDTNVPDNAACYRYLGTEEWRCLLTFEGGKCVPASNVTCKDNNCAPEAECKMTSNKIVCKCTKEGSE...................... 81
41 -15.4002gd4_L mol:protein length:58 Coagulation factor X, Stuart factor, Stuart-P  ali model follow..  96  1.........................................MRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 55
42 -15.3003kl6_B mol:protein length:57 Coagulation Factor X light chain  ali model follow..  98  5...........................................KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 57
43 -15.1001uzj_A mol:protein length:162 FIBRILLIN-1  ali model follow..  20  1.TDVNECLDPTTCISGNCVNTPGSYICDCPPDFTRVGCVDTRSGNCY-----LDIRPRGDNGDTACSNEIGVGVSKASCCCS.............. 80
44 -14.9002kl7_A mol:protein length:71 Fibulin-4  ali model follow..  23  1.SDVNECLTIPCKGEMKCINHYGGYLCLPRSAAV------------INDLHGEGPPPPVPPAQHPNPCPPGYEPDDQDS................. 68
45 -14.8001gk5_A mol:protein length:49 MEGF/TGFALPHA44-50 CHIMERA  ali model follow..  35  3YPGCPSSYDGYCLNGGVCMESLDSYTCNCVIGYSGDRCE......................................................... 43
46 -14.8002w86_A mol:protein length:147 FIBRILLIN-1  ali model follow..  32  2.ADIDECESSPCIN-GVCKNSPGSFICECSSESTKTICIETIKGTCWQTVIDKNGLCVNTRGSFKCQCPSGMTLDATGRIC............... 146
47 -14.6004k0v_A mol:protein length:529 TEK tyrosine kinase variant  ali model follow..  30  195...GPECNHTACMNNGVCHEDTGE--CICPPGFMGRTCEKTCKERCSQEGCKSYVFCLPDPYG--CSCATGWKGLQCNEACHPKLRCSCNNGEMCD 302
48 -14.6002ra0_L mol:protein length:51 Coagulation factor X  ali model follow..  97  2.............................................CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTL.. 50
49 -14.5001kig_L mol:protein length:51 FACTOR XA  ali model follow..  60  1.............................................CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFTQGR 51
50 -14.4003r05_A mol:protein length:1254 Neurexin-1-alpha  ali model follow..  30  191....EEGEGGVCLNGGVCSVVDDQAVCDCSTGFRGKDCSQGKE..................................................... 230
51 -14.3001ob1_C mol:protein length:99 MAJOR MEROZOITE SURFACE PROTEIN  ali model follow..  27  2.ISQHQCVKKQCPQNSGCFRHLEREECKCLLNYEGDKCVENPNPTCNENNCDADAKCTEEGKKITCECTKPDS....................... 83
52 -14.2001cej_A mol:protein length:96 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  25  2.ISQHQCVKKQCPQNSGCFRHLEREECKCLLNYEGDKCVENPNPTCNENNCDADAKCTSNGKKITCECTKPDS....................... 83
53 -14.1005f1a_A mol:protein length:553 Prostaglandin G/H synthase 2  ali model follow..  43  2....NPCCSHPCQNRGVCMSGFDQYKCDCTTGFYGENCSTP....................................................... 40
54 -14.0001yo8_A mol:protein length:634 thrombospondin-2  ali model follow..  21  1.ADPDGCLSNPCFPGAQCSSFPGSWSCFCPVGFLGNGTHCEDLDECALVSTSKVPRCVNTQPGFHCPCPPRYRGNQPVGVGLEAAKTEKQV..... 98
55 -13.7002ygo_A mol:protein length:188 WNT INHIBITORY FACTOR 1  ali model follow..  32  148....QAECPGGCRNGGFC---NERRICECPDGFHGPHCEGT....................................................... 181
56 -13.6002m74_A mol:protein length:136 Fibrillin-1  ali model follow..  12  8........HDALKGPNVCGS---RYNAYCCPGWKTLPGGNQCIVPICRHSCGDGFCSRPN----MCTCPSGQIAPSCGSRSIQHCNIRCMNGGSC. 87
57 -13.6001u67_A mol:protein length:600 Prostaglandin G/H synthase 1 precursor  ali model follow..  43  34....NPCCYYPCQHQGICVRGLDRYQCDCTTGYSGPNCTIP....................................................... 72
58 -13.5002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model follow..  24  148....QAECPGGCRNGGFCNE---RRICECPDGFHGPHCEKA----LCTPRCMNGGLCVT---PGFCICPPGFYGVNCDKANCST---TCFNGGTC. 225
59 -13.3004yzu_B mol:protein length:62 Coagulation factor IX  ali model follow..  43  1.........................................MDVTCNIKNGRCEQFCKNSANKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQ 56
60 -13.2003cfw_A mol:protein length:164 L-selectin  ali model follow..  28  121.....SCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV..................................................... 158
61 -13.1003ltf_D mol:protein length:58 Protein spitz  ali model follow..  31  9....ETFDAWYCLNDAHCIADLPVYSCECAIGFMGQRCEYKE...................................................... 50
62 -12.7001rfn_B mol:protein length:57 PROTEIN (COAGULATION FACTOR IX)  ali model follow..  46  2............................................TCNIKNGRCEQFCKNSANKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQ 54
63 -12.7001a3p_A mol:protein length:45 EPIDERMAL GROWTH FACTOR  ali model follow..  29  2..GAPSSYDGYCLNGGVAIESLDSYTCNCVIGYSGDRCQ......................................................... 40
64 -12.6001n1i_A mol:protein length:105 Merozoite surface protein-1  ali model follow..  19  8.SSAHKCIDTNVPENAACYRYLGTEEWRCLLGFKGGKCPASITCEENNGGCAPEAECTMDKKEVECKCTKEGSE...................... 85
65 -12.4002mgr_A mol:protein length:99 Merozoite surface protein 1  ali model follow..  23  4..PKHVCVDRDIPKNAGCRDDDGTKEWRCLLGYEGNTCVENNNPTCDINNCDPTASCQNAESTIICTCKEPTPNA..................... 88
66 -12.4003s94_A mol:protein length:619 Low-density lipoprotein receptor-related prot  ali model follow..  26  566......................................RVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCIV............. 610
67 -12.2003gis_X mol:protein length:121 Thrombomodulin  ali model follow..  26  2.EPVDPCFRANCEY--QCQPNQTSYLCVCAEGFAPADCDPNTQASCEENGGFCSGVCHNLPGTFECICGPDSALAGQIGTD............... 117
68 -11.6001p9j_A mol:protein length:54 chimera of Epidermal growth factor(EGF) and T  ali model follow..  34  6....NDCPLS-CLHDGVCIEALDKYACNCVVGYIGERCQ......................................................... 45
69 -11.5004ux8_A mol:protein length:607 PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPT  ali model follow..  12  527F---STCSPSTCPD-GHCDVVETQDINICPQDCLRGSIVGGHEPGEPRGIKAGYGTCNCFPEEEKCFCEPEIQDPLCDELCR.............. 607
70 -11.5003f1s_B mol:protein length:283 Vitamin K-dependent protein Z  ali model follow..  35  1.................................AKNECHPERTDGC-------QHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV..... 51
71 -11.5004a0p_A mol:protein length:628 LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROT  ali model follow..  27  579..........................................QHPCAQDNGGCSHICLVKGGTTRCSCPMHLVLLQDELSCGGTK........... 622
72 -11.4003u7u_G mol:protein length:55 Neuregulin 1  ali model follow..  35  16...........CVNGGECLSNPSRYLCKCPNEFTGDRCQ......................................................... 48
73 -11.4003s8v_A mol:protein length:623 Low-density lipoprotein receptor-related prot  ali model follow..  25  572......................................QEYRQHPCAQDNGGCSHICLVKGGTTRCSCPMHLVLLQDELSC............... 615
74 -11.3002mgp_A mol:protein length:99 Merozoite surface protein 1  ali model follow..  23  4..PKHVCVDRDIPKNAGCRDDDGTEEWRCLLGYEGNTCVENNNPTCDINNCDPTASCQENSKKIICTCKEPTP....................... 86
75 -11.3001ivo_C mol:protein length:53 Epidermal growth factor  ali model follow..  34  4....SECPLS-CLHDGVCIEALDKYACNCVVGYIGERCQ......................................................... 43

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.