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Query: 3o7b_A mol:protein length:244 Ribosome biogenesis Nep1 RNA methyltransferas, from PDB0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RSDITSLYKKVGENLYFQGMGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAGDTTLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELLDGDVAVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERVRAHKVGLast
1 -6.670sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5 (Range: 3132-3324)  ali follow..  12  18.YTVTSLDNQPLAARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDSTEEILTVSVVNQSLEKLVPGAREVLTEIFKSCAIRVSDIYLSKEQINSQTPGNLLHLFFTNVRPPK--KVLEDQLTQILRKYGVP.................................................................................................. 192
2 -6.070sp|Q5T5Y3|CAMP1_HUMAN Calmodulin-regulated spectrin-associated protein 1 OS=Homo sapiens GN=CAMSAP1 PE=1 SV=2 (Range: 21-185)  ali follow..  16  15.............ARAKIAANLQWICAKAGRDNIPEDLRDPFYVDQYEQEHIKPPVIKLLLSSELYCRVCSLILKGDQVAALQGHQSVIQA----LSRKGIYVMESDDTPVTESDLSRAPIKMSAHMAMVDALM........................................................................................................ 132
3 -5.830tr|Q5T3Q7|Q5T3Q7_HUMAN HEAT repeat containing 1 OS=Homo sapiens GN=HEATR1 PE=2 SV=1 (Range: 29-208)  ali follow..  11  7............EAATIDRDTAFAIGCTGLEELLGIDPSFEQFEAPLFSQLAKTLERSVQTKAVNKQLDENISLFLIHLSPYFLLKPAQKCLEWLIHRFHIHLYNQDSLIACVLPYHETR-----FVRVIQLL......................................................................................................... 123
4 -5.830sp|Q9H583|HEAT1_HUMAN HEAT repeat-containing protein 1 OS=Homo sapiens GN=HEATR1 PE=1 SV=3 (Range: 29-208)  ali follow..  11  7............EAATIDRDTAFAIGCTGLEELLGIDPSFEQFEAPLFSQLAKTLERSVQTKAVNKQLDENISLFLIHLSPYFLLKPAQKCLEWLIHRFHIHLYNQDSLIACVLPYHETR-----FVRVIQLL......................................................................................................... 123
5 -5.520sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2 (Range: 124-277)  ali follow..  12  1..............................IGAIPSSYNYQQHSVSDYLRQSYGLSMDFNS-------------------PNDYNKLVLSLLSGLPNEVDFAINV----CTLLSNESKHVMQLEKDPKIITLLLA....................................................................................................... 82
6 -5.440sp|O15357|SHIP2_HUMAN Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 OS=Homo sapiens GN=INPPL1 PE=1 SV=2 (Range: 312-409)  ali follow..  13  14.................................................KIGKSQKFTLVDVEGGRLVLLRRQRDSQEDWTTFTHDRIRQLIKSQ-NKLGVVFEKEKDRTQRKDFIFVSARKREAFCQLLQ........................................................................................................... 98
7 -5.390sp|A2VCL2|CC162_HUMAN Coiled-coil domain-containing protein 162 OS=Homo sapiens GN=CCDC162P PE=2 SV=3 (Range: 271-493)  ali follow..  10  85........PSGASEVEIKTHQLQKLLENCEIQMIQ----------EVLRKVNREMTLVLSEKCKEECSLQVMKENFSVSRPQIVEKFIQRLMNYQDDGVEITFRKLEACLLSLGCDVRECSNFETYSMCYEHVLHH...................................................................................................... 213
8 -5.140sp|Q9NWS6|F118A_HUMAN Protein FAM118A OS=Homo sapiens GN=FAM118A PE=2 SV=2 (Range: 25-142)  ali follow..  1.................KQPQELLLVIGTGVSAA-PALCSWRSCIEAVIEAAEQGDVAEFRRKVTHDLIRKMSPRTGDAKPSFFQDCLMEVFD----DLEQHIRSPVVL................................................................................................................................. 107
9 -5.140sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3 (Range: 708-828)  ali follow..  17  46...................................................................................AYKTIKTKLPVTLRSMSLYLSNKDTEFILFKPRNNIQQVFQKFHALLKEEFS....................................................................................................... 98
10 -4.960sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3 (Range: 611-799)  ali follow..  13  58....................KLLSITVRNAKKIKYFEGVSPKSLKHSPEDPEKYSCFALF-----VKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDV---RAYVPALQMAFKLGLSYTPLAEVGLNALEEWSIYIDRHVMQPYYKDILPCL................................................................................. 186

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.