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Query: 3o7b_A mol:protein length:244 Ribosome biogenesis Nep1 RNA methyltransferas, from PDB0516

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RSDITSLYKKVGENLYFQGMGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAGDTTLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELLDGDVAVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERVRAHKVGLast
1 -7.810GS13343A YP_212484.1 385281 Selected-2007-09-11  ali follow..  10  2...............HNCKGSIWIIFFRFLLCLWACGCSDDAGMPAPPAGADRVTACVRLSVRVVGETTRAAVQADATV-------------EEKISSVAVFLVSVDGSGKEDWNDVQYEVVYGTTSSAADVYQARIPTTPGEKKVYVGANPGQVHAICGQAEGKGLYTATGAGYDEVIRQFARGTEGIAMTGKAGTSVTVSAGTDVNVDLTASPITLERVVAKVLLVCD........ 205
2 -6.670SP18305A ZP_02090544.1 411550 Selected-2009-11-12  ali follow..  21  115..........................................................................................VLDG--KSFRLEATLADGTRIEAHGENKFPPNYRDVMSALDDLTAAAQKNALQQ.............................................................................................. 166
3 -6.340GS13536A NP_812134.1 384667 PDB-2013-06-20  ali follow..  13.....................CLGAFISCTNDEQEVNMVKPTNANSEIEVINDGTMIKFKDVESYENALLKVSAMSTSEQVSFLNSLSFKSQMILMQEAD---GELDKICNQAADKAEFDVLYEKYKHKYGDVFMFNTIDATDSPYSRLVYVANEYFVNMKGEFMIGDS..................................................................... 158
4 -5.950TM0649 TM0649 282521 Purified-2003-11-26  ali follow..  18  76............................................................SFDWHKRLLNKMTLEIPGLRPAVISKRLKEMLDEYLRFRHVFRNVYGERMKPLLEKARFEEEIERFKDFLRELAEK...................................................................................................... 161
5 -5.690GS13854A YP_001304333.1 384463 Purified-2008-06-17  ali follow..  12.....................CTLLMISCSNDAELINVAETTGLQTKAFVGEADAGDKCINDSVFNAMLWEMNDMSEEERNNIFSGAGFVSQWQLMQEADQEQELIVDNYEKDLSQPWPAHQIKEFKQKYDDVFMFEPYDSTDIAHYKLKGSTYSSFVNRRGVFLIGDS..................................................................... 169
6 -5.530SP17015A ZP_02072989.1 409525 Purified-2010-09-29  ali follow..  12  2................KVTKILIAMLASAFIVTACDPIEDEDLRDKYVTDAGTPITKEALQAAISITQPFPNQDGVKNSRPDIGGSWHIEWGAKEVNKVRLWSRTT-------SPMRTIPSTIWAFPPI............................................................................................................. 121
7 -5.360SP13489B ZP_01961851.1 406881 Selected-2009-11-12  ali follow..  2..................KRFTQLMSLLFMAAVTQYSCINDADVAFSDESHTDSNGNLALFFEIPNENHTRSAESSGVTETGSKD-------EYAVKSLTVYLFDSTTKSLKDQQELKNIRQVKGEGRNIQYTADRITVNPGTYNIFAIANGINKEITMQDDFLNAVDEVTYSTGKIPNVPTEGFVMTNRGAANLNIEIRKPTDSDKITNVS---ISLERAVAKIELTQKQ....... 206
8 -5.340TM1870 TM1870 283722 Purified-2004-02-02  ali follow..  12  48.....................IVLGLENRIVYTMIDVVNGKVSPQEALVKHKMLKNLYLLPASQIATKEMISPNDMKAIVKELIPHFDYIIIDSPAG-FRNAVAPAERVLVVTTPELPAISDADRVIGLLEHMVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIPVSLNG............................................................. 224
9 -5.340TM0681 TM0681 282551 Purified-2001-10-17  ali follow..  11  42....................NSVLVCGKKFCVLFDSTLFPERKIKEFAAEILGKEIAVVFNTHYHEEYIRKIGVEVSLKFPDETFSENYRFGDIVVEAVHLGGHTPDSSIFVLKNEKIVICGDLLTTGIHAEIVTDSDLFGWIEALSEIEKIRADYFVPGHGKV--GTIEDVRNMKDYISKVLRFREGSVKHSELLEDPN...................................... 250
10 -5.250TM1380 TM1380 283241 PDB-2005-03-29  ali follow..  14  14.......................VIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVPIGRW--ERTRFLIE----KCVELGVDEIFFHKFER-HEISLDKAKIVVREAAKQCKRYLFPKVLEKLEFSGNVITLDLDASQNLLDANLEGSITVVVG--PEGGFSEKERELLRSSTIVSLGKKILRFETAAILTVGYIALKKQ.... 220

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Friedberg I, Jaroszewski L, Ye Y, Godzik A. The interplay of fold recognition and experimental structure determination in structural genomics. Curr Opin Struct Biol. 2004 Jun;14(3):307-12.