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Query: 3o7b_A mol:protein length:244 Ribosome biogenesis Nep1 RNA methyltransferas, from PDB0516

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RSDITSLYKKVGENLYFQGMGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAGDTTLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELLDGDVAVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERVRAHKVGLast
1 -82.700sp|Q92979|NEP1_HUMAN Probable ribosome biogenesis protein NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4  ali follow..  26  23.DALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVG-----------------KTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELSDPIVFVVGAFAHGKVSVEY-----TEKMVSISNYPLSAALTCAKLTTAFEEVWGV... 243
2 -7.050sp|Q9NSU2|TREX1_HUMAN Three prime repair exonuclease 1 OS=Homo sapiens GN=TREX1 PE=1 SV=1  ali follow..  13  54.........................................PTMGSQALPPGPMQTLIFFDME---------ATGLPFSQPKVTELCLLAVHRCALESPPT--RVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDR.................................................................... 183
3 -6.760sp|Q96JD4|CF114_HUMAN Uncharacterized protein C6orf114 OS=Homo sapiens GN=C6orf114 PE=2 SV=2  ali follow..  15  3.............................................................................DSRRDVLHEPAIALLSSPQTQSRLYIHQQDAVFIGFSNEFNIPHPFTEWLQCVRKYSQSWGVRKGQRHIRYGMCSERTHHLSRTYSSLLEREEKLA................................................................. 122
4 -6.610sp|Q6UX46|F150B_HUMAN(removed signalp:1-24) Protein FAM150B OS=Homo sapiens GN=FAM150B PE=2 SV=2  ali follow..  11  2..........AEPREPADGQALLRLVVELVQELRKHHSAEHKGLQLLGRDCALGRAEAAGLGPSPEQRVEIVPRDLRMKDKFLKHLTGPLYFSPKCSK-RLYHNTRD---------CTIPAYYKRCARLLTRLAVSPVCMEDKQ.............................................................................................. 128
5 -5.910sp|Q9ULI0|ATD2B_HUMAN ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=3 (Range: 451-750)  ali follow..  12  3.........ALANECSQGDKKVAFFMRKGA-DCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIV-STLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDR................................................................................................................. 116
6 -5.910sp|Q99102|MUC4_HUMAN(removed signalp:1-28) Mucin-4 OS=Homo sapiens GN=MUC4 PE=1 SV=3 (Range: 1351-1650)  ali follow..  84.......................................................DFLLVGAQDGNSSFLLQGRTAQTGSAQATNFIAFAAQYRSSSTVQWLLEPHDAIRVLLDNQVTFQPDHEDGGGQETFNATGVLLSRNGSEVSASFDGWAT--------VSVIALSNILHASASLPPEYQNRTEGL--GVWNNNPEDD------FRMPNGSTIPPGSPEEMLFHFGMTWQIN.. 254
7 -5.910sp|Q92918|M4K1_HUMAN Mitogen-activated protein kinase kinase kinase kinase 1 OS=Homo sapiens GN=MAP4K1 PE=1 SV=1 (Range: 451-750)  ali follow..  11  16LDKPPLLPPKKEKMKRKGCALLVKLFNGCPLRIHSTAAWTHPSTKDQHLLLGAEEGIFILNRNDQEATLEML-----------------------FPSRTTWVYSINNVLMSLSGKTPHLYSHS-----ILGLLERKETRAGNPIAHISPHRLLARKNMVSTKIQDTKGCRACCVAEGASSGGPFLCGALETSVVLLQWYQPMNKFLLVRQVLFPLPTPLSVFALLTGPGSELPA... 222
8 -5.880sp|Q9BQ50|TREX2_HUMAN Three prime repair exonuclease 2 OS=Homo sapiens GN=TREX2 PE=1 SV=1  ali follow..  13  45................................................SEAPRAETFVFLDLE---------ATGLPSVEPEIAELSLFAVHRSSLENPEVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVA......................................................................... 159
9 -5.840sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1 (Range: 301-600)  ali follow..  18  4.......................KALYSTAMESIQGEARRGGTMETDDHMGG-------------------IPARNSKGERLLLYIGIIDILQS-VKKLE---HSWKALIVSVHR----PGFYEWFQRFMCNTVFK...................................................................................................... 98
10 -5.740sp|Q8IVH8|M4K3_HUMAN Mitogen-activated protein kinase kinase kinase kinase 3 OS=Homo sapiens GN=MAP4K3 PE=1 SV=1 (Range: 451-750)  ali follow..  10  88...........PTPKVHMGACFSKVFNGCPLKIHCASSWINPDTRDQYLIFGAEEGIYTLNLNELHE----------------------TSMEQLFPRRCTWLYVMNNCLLSISGKASQLYSHN-LPGLFDYARQMQKLPVA--PAHKLPDRILPRKFSVSAKIPETKWCQKCCVVRNPYTGHKYLCGALQTSIVLLEWVEPMQKFMLIKHIDFPIPCPLRMFEMLVVPEQEYGVSRG 295

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.