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Query: 3Q8J Entity 1(prereleased), from PDB0312

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .
1 -5.400d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}  ali model 3D-neighbors follow..  27  2DGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAIC... 35
2 -4.940d1eita_ g.3.6.2 (A:) mu-Agatoxin-I {Funnel web spider (Agelenopsis aperta) [TaxId: 6908]}  ali model 3D-neighbors follow..  30  2..CVPENGHCRDWYDECCEGFYCSC............ 24
3 -4.680d1fu3a_ g.3.6.1 (A:) Conotoxin {Conus textile, Tx VIa [TaxId: 6494]}  ali model 3D-neighbors follow..  33  2..CKQSGEMCNLLDQNCCDGYCIVLV........... 25
4 -4.470d1mb6a_ g.3.6.2 (A:) Huwentoxin-IV {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}  ali model 3D-neighbors follow..  30  2..CLEIFKACNPSNDQCCKSSKLVC............ 24
5 -4.260d1ttka_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus magus), M VIIa [TaxId: 6492]}  ali model 3D-neighbors follow..  38  1..CKGKGAKCSRLMYDCCTG................. 18
6 -4.130d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}  ali model 3D-neighbors follow..  43  4..CQLQGFNCVVRSYPCCRGLTCSYFPGSTYGRC... 41
7 -4.090d1mkna_ g.5.1.1 (A:) Midkine, a heparin-binding growth factor, N-terminal domain {Synthetic}  ali model 3D-neighbors follow..  28  12......GSECAEWAWGPCTPSSKDCGVGFREGTC... 39
8 -4.060d1uypa1 b.29.1.19 (A:295-432) Beta-fructosidase (invertase), C-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  102.....DSIAFSFRIHPENVYNILSVKSNQVKLEVFEL 133
9 -4.010d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  25  132...HFRATSLETLRNMVAAGSGITLLP.......... 155
10 -3.910d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  60...ELTDGAKSLKDLGVRDGYRIHAVDVTGGNE.... 89

FFAS is supported by the NIH grant R01-GM087218-01
8 1 7 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.