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2LAA1
Query: 2LAA Entity 1(prereleased), from PDB0312

Results of FFAS03 search in PfamA26U
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GGTGNKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAEISGYAKITVDIGSASQLEAAFNDGNNNWDSNNTKNYSFSTGTSTYTPGNSGNAGTITSGAPAGLast
1 -30.100PF03423.8; Q8W1P1_ORYSA/508-599; Carbohydrate binding domain (family 25)  ali follow..  17  1...GDRVKLFYNRSSRPLEIWMHGGYNNWSDGLSIAEKLEKDGDWWYADVTLPGALVLDWVFADGARNYDNNGRQDFHAVV....................... 91
2 -16.900PF03370.8; Q7PXQ2_ANOGA/202-311; Putative phosphatase regulatory subunit  ali follow..  20  24.......TVKVKNLSYHKEVIIRSSCDSWKTHEDTFCTAYLIFDTFSFKLTLPPSRRIEFCAADGVEYWDNNDGRNYSLT........................ 110
3 -10.700PF00686.14; AMYG_ASPOR/511-606; Starch binding domain  ali follow..  16  28..........................GSWNPSSATALNADTDNPLWTGTINLPAGQSFEYKFQNGAVTWESDPNRKYTVPSTCGV................... 92
4 -7.110PF12102.3; Q0AXX8_SYNWW/101-288; Domain of unknown function (DUF3578 topsan)  ali follow..  12  36..........NGNISNNVTPRWSVGQGNWIAFMDKNKADSIQKGIYVAYLFCQDMQGLYLCLMQGVTEIIQTVGRR............................ 106
5 -6.550PF11141.3; Q39X29_GEOMG/49-114; Protein of unknown function (DUF2914 topsan)  ali follow..  12  2GEETPIRHVWYRNGEVVGEQELQVKGQKWRTWSKRPIDRDSIGTWRVEALDSAGKLLKAVEFR......................................... 64
6 -6.460PF03714.9; Q06812_MICSP/955-1057; Bacterial pullanase-associated domain  ali follow..  10  1...ANTVRIHYTREAVD---YDDFGIWNWGDVAAVNFDGTDRYGAYPDIKLTEAAKEIGFLVVNEKTQEKDAGDKSFNLLDKFNHL----IKQGDDTVYVSP.. 102
7 -6.310PF07938.7; Q8TGE0_ASPOZ/6-309; Fungal fucose-specific lectin  ali follow..  18  63..ELKNIRVYSLTEDNVLQEAAYDSGSGWYNLAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTWNGDG............................... 140
8 -6.290PF01357.16; Q9ZP33_SOLLC/174-251; Pollen allergen  ali follow..  14  13.....SVLISNVAGAGDIAAKVKGSRTGW-----LPMGRIWGQNWHISADLKNQPLSFEITSSDGVTLTSYN................................ 75
9 -6.070PF07233.7; A8FWY7_SHESH/33-126; Protein of unknown function (DUF1425 topsan)  ali follow..  15  23GDLLQGSGIIQSKVATDLRLQYKF---TWYDVSGFTIEDEASA-WKSLKLHGKQRMQVTAL--------PNANAVRYELYVRK..................... 94
10 -5.950PF02903.9; Q5BLZ6_9BACI/1-121; Alpha amylase, N-terminal ig-like domain  ali follow..  19..DDKTLHIRLRTKKSDVHAVSLLHGDPYCQFTKTEMTKSGSDAYWWVAISPPYR-RLRYGFSGNERCVYTEKG.............................. 101

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.