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4E331
Query: 4E33 Entity 1(prereleased), from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEVPRDLMFHEVYPYHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIYDEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRPASAFSDPYPDYALLFAWNHAEEIMAKEQEFHQAGGRWILYVPEVHIRLast
1 -116.0004E33 Entity 1(prereleased)  ali  100  1GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEVPRDLMFHEVYPYHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIYDEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRPASAFSDPYPDYALLFAWNHAEEIMAKEQEFHQAGGRWILYVPEVHIR 416
2 -116.0003ndi_A mol:protein length:416 Methyltransferase  ali model follow..  100  1GHMSHLADVSPPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEVPRDLMFHEVYPYHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIYDEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRPASAFSDPYPDYALLFAWNHAEEIMAKEQEFHQAGGRWILYVPEVHIR 416
3 -25.1003cc8_A mol:protein length:230 Putative methyltransferase  ali model follow..  20  16.........................................................................................HYYNAVNPNLLKHIKKEWKEVL-DIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVV---LGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHIWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRV................................................................................................................................................................... 185
4 -24.2003dli_A mol:protein length:240 methyltransferase  ali model follow..  14  2.................................................................SLSGTDIHTSDYYFLFEEKFRGSRELVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK----FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERELLSLCYSKMKYSSYIVIESPNPTSLYSLINF--IDPTHKKPVHPETLKFILEYLGFRDVKIE..................................................................................................................................................................... 182
5 -23.6002p7h_A mol:protein length:250 Hypothetical protein  ali model follow..  15  5......................................................................SRNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRGITYIHSRFEDAQLPR------RYDNIVLTHVLEHIDDPVALLKRIDDWLAEGGRLFLVCPNANAVNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS..................................................................................................................................................................... 197
6 -20.1001vlm_A mol:protein length:219 SAM-dependent methyltransferase  ali model follow..  19  14...............................................................................FVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKI----KIGVEPSERMAEIARKRGVFVLKG-----TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT................................................................................................................................................................... 182
7 -19.4003e8s_A mol:protein length:227 Putative SAM Dependent Methyltransferase  ali model follow..  16  2..............................................................MEPIMRNPEDALLDSWHQNAQAHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQ-DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAFRTLASWLNALDMAGLRLVSLQE.................................................................................................................................................................... 208
8 -18.2003h2b_A mol:protein length:203 SAM-dependent methyltransferase  ali model follow..  13  2...................................................................TDDVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSV----FHHGTITDLSDSPKRWAGLLAWYSLIHMGELPDALVALRMAVEDGGGLLMSFFS-----PSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEASLE.................................................................................................................................................... 197
9 -17.5003l8d_A mol:protein length:242 Methyltransferase  ali model follow..  14  17......................................................................EKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGD-LSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDLQQSLTFLWVFMLKRHKEMKE.............................................................................................................................. 237
10 -17.0003ege_A mol:protein length:261 Putative methyltransferase from antibiotic bi  ali model follow..  11  3...........................................................................SIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLL-----------PHDLSDLFAAAAWRRPELYLKAEVRAGISSFALANQDLVEKGLELLTADLNNGE----WIRKYGEIHHLQEIDIGYRFIYTTLDK................................................................. 261
11 -16.8003cgg_A mol:protein length:195 SAM-dependent methyltransferase  ali model follow..  13  19...............................................................................YAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEA----WVVGDLSVDQISETDFDLIVSAGNVMGFDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELFESWDLKPFVQGSEFLVAVFTK.................................................................................................................................................................... 194
12 -16.1003hnr_A mol:protein length:220 probable methyltransferase BT9727_4108  ali model follow..  16  12.........................................................................WAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEV---PTSIDTIVSTYAFHHLTDDEVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQR-YYTRIPVMQTIFENNGFHVTFTR..................................................................................................................................................................... 199
13 -16.1003dlc_A mol:protein length:219 Putative S-adenosyl-L-methionine-dependent Me  ali model follow..  17...............................................................................MDEISKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN-IVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGIS--SYEIILGDEGFWIIISKTDQE................................................................................................................................................... 217
14 -16.1003ccf_A mol:protein length:279 Cyclopropane-fatty-acyl-phospholipid synthase  ali model follow..  18  24...............................................................................WDATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHL----FDVADARNFRVD-KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFEALYNALETLGIHNPQALNPWYFSIGEYVNILEKQGFDVTYAA..................................................................................................................................................................... 202
15 -15.9001vl5_A mol:protein length:260 unknown conserved protein BH2331  ali model follow..  20...............................................................................................LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFGHQQVE--YVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGLLLVDNSAPENDAFDVFYNYVEKSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKPTVKNK-----GSS........................................................................................ 254
16 -15.8001xtp_A mol:protein length:254 LMAJ004091AAA  ali model follow..  11  62...........................................................................ATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADKFFKHCQQALTPNGYIFFK----ENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF.................................................................................................................................................................... 237
17 -15.8003ou2_A mol:protein length:218 SAM-dependent methyltransferase  ali model follow..  14  1...............................................................MTTSHGLIESQLSYYRARASEYDATFVPYSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVE--FRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRAFWESVRSAVAPGGVVEFVDEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE..................................................................................................................................................................... 203
18 -15.4003i9f_A mol:protein length:170 Putative type 11 methyltransferase  ali model follow..  19  7................................................................................................EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK--------SVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVII.................................................................................................................................................................................................................. 110
19 -15.3001xxl_A mol:protein length:239 YcgJ protein  ali model follow..  15  4...............................................................................................LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFGVENVR--FQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGFLLVDHYAPEDPVLDEFVNHLNRSHVRESSLSEWQAMFSANQLAYQDIQK.................................................................................................................................................................... 167
20 -15.2002gs9_A mol:protein length:211 Hypothetical protein TT1324  ali model follow..  15  1.......................................................................DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYP--QKVGVEPSEAMLAVGRRRAPEA----WVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVLSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEAEGEAV...................................................................................................................................................................... 179
21 -15.1002p35_A mol:protein length:259 Trans-aconitate 2-methyltransferase  ali model follow..  15  1..........................................................................QGHMAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRVNVITGIDSDDDMLEKAADRLPNT----FGKADLATWKPA-QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGG-PLPPPSDYFNALSPKSSRV......................................................................................................................................................................... 184
22 -15.1003g5l_A mol:protein length:253 Putative S-adenosylmethionine dependent methy  ali model follow..  17  1.............................................................MSLKENKYDDKHFFEQYSQMPRSKEGLKAAGEW--HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKVLGIDLSERMLTEAKRKTTSPVVCYEQKA-IEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH-RYFNESMRTSHFLGEDVQKYTVTTYIQTLLKNGFQINSVIE.................................................................................................................................................................... 215
23 -14.9003mgg_A mol:protein length:276 Methyltransferase  ali model follow..  14  8.............................................................................HGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNDAEITSIDISPESLEKARENGIKNVK--FLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVRQIYPLLQESGFEKIRVEPRMVYIDSSKPELVDGFILKTIIPMVEGVKEQSKMQIIKEEEWEKGIEELHKTAEH............................................................................................................. 253
24 -14.7003bxo_A mol:protein length:239 N,N-dimethyltransferase  ali model follow..  15  8.........................................................................HADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLL-DVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA--TLHQGDMRD--FRLGRKFSAVVSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFPGKGVRHFSDVHITLFHQAEYEAAFTAAGLRVEYL...................................................................................................................................................................... 224
25 -14.5002yqz_A mol:protein length:263 Hypothetical protein TTHA0223  ali model follow..  12  2......................................................................SSALLRAAYAYDRLRAHPPEVAGQIATAMASAVPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLE-TLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREVAR.................................................................................................................................................................. 197
26 -14.5003pfg_A mol:protein length:263 N-methyltransferase  ali model follow..  16  18.........................................................................IAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLL-DVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDA--VLHHGDMRD--FSLGRRFSAVTCMSSIGHLAELDAALERFAAHVLPDGVVVVEPWWFPENFPDRGITHHEESHITLFTREQYERAFTAAGLSVEFM...................................................................................................................................................................... 234
27 -14.3003bgv_A mol:protein length:313 mRNA cap guanine-N7 methyltransferase  ali model follow..  3..........................................................................QSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDITADSSKELLIDKFRDPQMCFDICSCQYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLELEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT----------FLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQ......................................................................... 312
28 -14.1003e23_A mol:protein length:211 uncharacterized protein RPA2492  ali model follow..  14  5..............................................................MTQAFDDDTLRFYRGNATAYAERQPRSATLTKFLGEL------PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAI-----DAYDAVWAHACLLHVPELADVLKLIWRALKPGGLFYASYKS-----GEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV..................................................................................................................................................................... 179
29 -14.1003sm3_A mol:protein length:235 SAM-dependent methyltransferases  ali model follow..  15  28........................................................................................................LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSP----FKVENASSLSFHDSSFDFAVMQAFLTSVPDPKEIIKEVFRVLKPGAYLYLITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKE.................................................................................................................................................................. 208
30 -14.0001y8c_A mol:protein length:246 S-adenosylmethionine-dependent methyltransfer  ali model follow..  10  6.........................................................................FAHIYDKLIRADVDYKKWS-DFIIEKCVENNLVFDDYL-DLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL-DGEFYKRFDEEHERAYKEEDIEKYLKHGQLNILDKKKVEKFTERITYLVKLGG.................................................................................................................................................... 246
31 -14.0001ri1_A mol:protein length:298 mRNA CAPPING ENZYME  ali model follow..  12  28.....................................................................NSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKFVDFTRMVDGFKRLGLSLVERK..................................................................................................................................................................... 248
32 -14.0003uj6_A mol:protein length:266 Phosphoethanolamine N-methyltransferase  ali model follow..  16  1.............................................................MTLIENLNSDKTFLENNQYTDEGVKVYEFIFGEATKKILSDIELNENSKVLDIGSGGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILHLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKVKQRKYTLITVEEYADILTACNFKNVVSKDLSDY................................................................................................................................................................ 209
33 -14.0001jqd_A mol:protein length:292 Histamine N-Methyltransferase  ali model follow..  12  20...........................................................................RRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIILSIGGGAGKVQAQYPGVCINNEVVEPSAEQIAKYKELNLENVKFAWHKETSSEYQSELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDL------------------LSTMDISDCFIDGNENGDLLWDFLTETCNFNATAPPDLRAELGKDLQEPE................................................................................................ 270
34 -13.9003bkw_A mol:protein length:243 S-adenosylmethionine dependent methyltransfer  ali model follow..  17  2...............................................................MAQNIYDQPDFFAGYSQLGRSIEGLDGAAEW--PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGAYVLGLDLSEKMLARARAAGPDTGITYERAD-LDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH-RYLVEGPRKTDWLAKGVVKHTVGTTLNALIRSGFAIEHVEE.................................................................................................................................................................... 213
35 -13.9001wzn_A mol:protein length:252 SAM-dependent methyltransferase  ali model follow..  12  8.........................................................................LAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFSTIMYFEDLRKLFSKVAEALKPGGVFITDFPCWFYGGPNGEVKAFLVDDLNIYTPREVR-LLAEKYFEKVKI...................................................................................................................................................................... 228
36 -13.8003bus_A mol:protein length:273 Methyltransferase  ali model follow..  15  28.........................................................................LHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGGKPAVRLATARDVRVTGISISRPQVNQANAAGLANRVTFSYAD-AMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA-----DFVLLAPVEGAKKEAVDAFGIDEYESDVRQAELVVTSTVDISAQ................................................................................................................................................................ 219
37 -13.7002o57_A mol:protein length:297 putative sarcosine dimethylglycine methyltran  ali model follow..  16  57.................................................................................DEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA----VKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKDMGSLGLYRSLAKECGLVTLRTFSRPDS................................................................................................................................................................ 237
38 -13.6003jwg_A mol:protein length:219 Methyltransferase type 12  ali model follow..  11  15............................................................................................QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKEQITGVDVSYSVLERAKDREMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRDHRFEWTRKEAVKVAEKYGYSV......................................................................................................................................................................... 186
39 -13.5002ex4_A mol:protein length:241 adrenal gland protein AD-003  ali model follow..  15  46...............................................................................YGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLPLFREVDMVDITEDFLVQAKTEGKRVRN--YFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHEFLRRCKGSLRPNGIIVIKDNMAQ---EGVILDD--VDSSVCRDLDVVRRIICSAGLSLLAEER.................................................................................................................................................................... 218
40 -13.4002azt_A mol:protein length:295 Glycine N-methyltransferase  ali model follow..  11  15................................................................AEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPWMTLDKDVPQSAEGGFDAVICLNSFAHLSEHRLALKNIASMVRAGGLLVIDNRNYDHILSTG---CAPPGKNIYYKSDLTKDVTTSV-LDYTVQVPGAGQDGSPGLSKFRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD................................................................................................. 295
41 -13.3002gh1_A mol:protein length:301 Methyltransferase  ali model follow..  10  3......................................................................ETYDWNNKLTYLKNTRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVMKIPIYLSELGVKNIECRVSDKVNFLDSNMHHNDKNDLYQSLKEEGIAGDPGDKQQFVERLIARGLTYDNALAQYEAELRFFKALHLHSSLVYAPNMKITF.................................................................................. 288
42 -13.3003thr_A mol:protein length:293 Glycine N-methyltransferase  ali model follow..  14  15................................................................AEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPANWLTLDKDVPAGDGFDAVICLNSFAHLSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGC-KNIYYKKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG................................................................................................. 293
43 -13.0001r8x_A mol:protein length:292 glycine N-methyltransferase  ali model follow..  13  14................................................................AEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVMSVDASDKMLKYALKERWNRRKEPANWLTLDKDVLSGDGFDAVICLNSFAHLSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGC-KNIYYKKDITTSVLTVNNKAHMVTLDYTVQVPGTGRDGSPGFSKFRLSYYPHCLASFTELVRAAFGGRCQHSVLGDFKPYKPGQAYVPCYFIHVLKKTD................................................................................................. 292
44 -13.0002vdw_A mol:protein length:302 VACCINIA VIRUS CAPPING ENZYME D1 SUBUNIT  ali model follow..  11  5.........................................................................FRLNPEVSYFTNKRTRGPLGILSNYVKTLLDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERKFDYIQETIRSDTFVSSVREFGKFNIIDWQFAIHYSRHYATVMNNLSELTASGGKVLITTMDGDKLSKLSTMSTPMTEYI--IKKNDIVRVFNEYGFVLVDNVDFAINGASTMEDRPSTRNFFELNRGAIKCEGLDVEDLLSYYVVYVFSKR.................................................................................................................... 302
45 -13.0001nkv_A mol:protein length:256 HYPOTHETICAL PROTEIN yjhP  ali model follow..  14  7.............................................................................FTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRGVSERVHFIHNDAAG--YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIARLE............................................................................................................. 250
46 -12.9003ofj_A mol:protein length:216 Nodulation protein S  ali model follow..  15  37............................................................................................ERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTA-ELFDLIVVAEVLYYLEDMTTAIDNMVKMLAPGGHLVF.................................................................................................................................................................................................................. 152
47 -12.8003dh0_A mol:protein length:219 SAM dependent methyltransferase  ali model follow..  12  27................................................................................................EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMKGKVYAIDVQEEMVNYAWEKVNKLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFALAIIDWKKEERDKGPPPEE--------VYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQEEENPLMNV............................................................................................................................................ 204
48 -12.8003jwh_A mol:protein length:217 Hen1  ali model follow..  12  15............................................................................................QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSEQITGVDVSYRSLEIAQERLDRLRLP-LIQGALTYQDKRFHGYDAATVIEVIEHLDLSRAFERVLFEFAQP-KIVIVTTPNYNVKFANLPAGKLRHDHRFEWTRSQFQNWANKITER.......................................................................................................................................................................... 181
49 -12.5001ve3_A mol:protein length:227 hypothetical protein PH0226  ali model follow..  15  6.........................................................................YYRVFPTYTDINSQEYRSRIETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVFIVGDARKLSFEDKTFDYVIFIDSIVHFEELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR....................................................................................................................................................................................................... 151
50 -12.4003fzg_A mol:protein length:200 16S rRNA methylase  ali model follow..  7..............................................................KLLKKYNQGQLSIEDLLKIHSSTNERVATLNDFYTYVFGN--IKHVSSILDFGCGFNPLALYQWNENIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS.................................................................................................................................................................................................................. 150
51 -12.4002p8j_A mol:protein length:209 S-adenosylmethionine-dependent methyltransfer  ali model follow..  14  9............................................................................................PQLYRFLKYCNESNLDKTVLDCGGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLISKGDIRKLPFKDESMSFVYSYGTIFHMRDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLSYVSLEEADKYFKDMKVLFKEDRVVE.................................................................................................................................................................. 184
52 -12.2002kw5_A mol:protein length:202 Slr1183 protein  ali model follow..  13  2...............................................................................WDERFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTG-----KDLDLLPKLETLQSELPSLNWLIANNLERNLDEGA............................................................................................................................................................. 179
53 -12.1002pxx_A mol:protein length:215 Uncharacterized protein MGC2408  ali model follow..  18  5....................................................................REVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALHTVDQVLSEVSRVLVPGGRFIS.................................................................................................................................................................................................................. 157
54 -12.1003ggd_A mol:protein length:245 SAM-dependent methyltransferase  ali model follow..  14  1...........................................................GMEKLSAIKKPDINVADAWEQYWNKTLV-NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPKRELLGQSLRILLGKQGAMYLCIDFFNSLLEKYELLLVMEHGIRPGIFTAEDIELYFPDFEILSQGEG................................................................................................................................................................... 219
55 -11.9001fbn_A mol:protein length:230 MJ FIBRILLARIN HOMOLOGUE  ali model follow..  25.............................................................IATKSIVKGKKVYDEKIIKIGDEENPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP------------IFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIWEGK.................................................................................................................................................. 230
56 -11.9002avn_A mol:protein length:260 ubiquinone/menaquinone biosynthesis methyltra  ali model follow..  18  22...............................................................................YDSMYETPKWKLYHRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVV----EAKAEDLPFPSGAFEAVLALDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTEDLDSLEGFETVDIRGI................................................................................................................................................................... 207
57 -11.7002i62_A mol:protein length:265 Nicotinamide N-methyltransferase  ali model follow..  11  17....................................................................NPRDYLEKYYSFGSRAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDSLPPADCLLSTLCLDAAPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGE-------SSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSLFSLVGRKPGRSE................................................................................................................................................ 265
58 -11.6002iip_A mol:protein length:283 Nicotinamide N-methyltransferase  ali model follow..  11  1.....................................MGSSSSGLVPRGSMESGFTSK----TYLSHFNPRDYLEKYYKFGSRAESQILKHLLKNLFKIFCLDGVKGDLLIDIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKAAPAAFDWSPVVTYVCDPLPPADCVLSTLCLDAAPTYCRALRNLGSLLKPGGFLVIMLKSSYYMIGEQKFSSL------PLGREAVEAAVKEAGYTIEWFEVI................................................................................................................................................................... 251
59 -11.6003d2l_A mol:protein length:243 SAM-dependent methyltransferase  ali model follow..  15  4.............................................................................YEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD-HYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM-EDGRYDRVDETHQRTYPPEQYITWLREAGFRVCAV...................................................................................................................................................................... 220
60 -11.5001kp9_A mol:protein length:287 CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE  ali model follow..  17  26..................................................................FLDPTQTYSCAY--FERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHFERYDAFFSLAHRLLPADGVMLLHTRGLPMSFTFARFLKFIVTEIF--SIPMVQECASANGFTVTRVQSLQPH................................................................................................................................................................ 231
61 -11.5001yz3_A mol:protein length:289 Phenylethanolamine N-methyltransferase  ali model follow..  11  39.........................................................................NYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRW---LPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE-------TVVPVSEEEVREALVRSGYKVRDLRT.................................................................................................................................................................... 255
62 -11.5004DM3 Entity 1(prereleased)  ali follow..  11  39.........................................................................NYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRW---LPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE-------TVVPVSEEEVREALVRSGYKVRDLRT.................................................................................................................................................................... 255
63 -11.5001im8_A mol:protein length:244 YecO  ali model follow..  15  28...........................................................................EVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAAARRNINQPNVKIIGIDNSQPMVERCRQHHSEIPVEILCNDIRH---VEIKNASMVILNFTLQFLPDRIALLTKIYEGLNPNGVLVLEKFRFEDTKINHLLIDLHHQFKRTDSIETHKVRLKNVGFSQVEL...................................................................................................................................................................... 230
64 -11.5003dtn_A mol:protein length:234 Putative Methyltransferase MM_2633  ali model follow..  11  1.............................................................MSLSEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASV--DTENPDILDLGAGTGLLSAFLMEKEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDELYKRSYSILKESGIFINDLVHGETAFIENLNKTIWRQYVKDIEMNQQLNWLKEAGFRDVSC...................................................................................................................................................................... 211
65 -11.4001tpy_A mol:protein length:287 methoxy mycolic acid synthase 2  ali model follow..  17  26..................................................................FLDPTQTYSCAH--FEREDMTLEEAQIAKIDLALGKLGLQPGMTLLDIGCGGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAGWEQFNEPVDRIVSIGAFEHFDRHADFFARAHKILPPDGVLLLHTHGLPLTLWLARFLKFIATEIF--TIEMVEEQSAKTGFTLTRRQSLQPH................................................................................................................................................................ 231
66 -11.4001l1e_A mol:protein length:287 mycolic acid synthase  ali model follow..  17  26..................................................................FLDPTQTYSCAY--FERDDMTLQEAQIAKIDLALGKLNLEPGMTLLDIGCGGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLEGWEKFDEPVDRIVSIGAFEHFQRYHHFFEVTHRTLPADGKMLLHTKGLTLTHELVHFTKFILAEIF--SIPTVHEYAEKVGFRVTAVQSLQLH................................................................................................................................................................ 231
67 -11.2002fk7_A mol:protein length:318 methoxy mycolic acid synthase 4  ali model follow..  13  48..................................................................FQDPTRTYSCAY--FEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFENYDDFFKRCFNIMPADGRMTVQSRGKKLSFETARFIKFIVTEIF--STEMMVEHGEKAGFTVPEPLSLRPH................................................................................................................................................................ 253
68 -11.1003g2m_A mol:protein length:299 PCZA361.24  ali model follow..  12  32............................................................LASVGERGVLCDFYDEGAADTYRDLIQDADGTSEAREFATRTGPVSGP--VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRPADVRDRCTLVQGDMSAFALDKRFGTVVISGSINELADRRGLYASVREHLEPGGKFLLSLAMSEAAADETTDPFVVCTHRRLLAPDQVVRELVRSGFDVIAQSGGAGRKDMVLVEAVMPGATADAR.............................................................................................................................................. 293
69 -11.0002a14_A mol:protein length:263 indolethylamine N-methyltransferase  ali model follow..  16.....................................................................LPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGLADCVLTLLAMECADAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK-------SCVALEKGEVEQAVLDAGFDIEQLLHS................................................................................................................................................................... 238
70 -10.9004dq0_A mol:protein length:200 Tellurite resistance protein  ali model follow..  13  23................................................................................................SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTDGEYDFILSTVVLMFLETIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV------GFPFAFKEGELRRYYE--GWEMVKYNE.................................................................................................................................................................... 173
71 -10.7003p7e_A mol:protein length:383 Arsenic methyltransferase  ali model follow..  12  1..............................MPCSCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFLPADGSLEGATVLDLGCGTGYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDLYGECLGALYLEDFRRLVAEAGFRDVRLVSV................................................................................................................................................................... 251
72 -10.7003id5_B mol:protein length:232 Fibrillarin-like rRNA/tRNA 2`-O-methyltransfe  ali model follow..  11  22........................................................DGSFRLCTRNLVPNFNVYGERLIKYEGVENAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDINGKAYGVEFSPRVVRELLLVAQRRPNFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG............................................................................................................................................................................ 232
73 -10.7001nt2_A mol:protein length:210 Fibrillarin-like pre-rRNA processing protein  ali model follow..  13  49..................................................................................................KGHRLKLRGDERVLYLGAASGTTVSHLADDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVLIYQDIAQKNQIEILKANAEFFLKEKGEVVIEMEGDFKIVKHGSLMPYHRDHIFIHAYR...................................................................................................................................................................................... 209
74 -10.6001p91_A mol:protein length:269 Ribosomal RNA large subunit methyltransferase  ali model follow..  10  4.............SCPLCHQPLSR-FDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARR-----------------------AFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAEITTFGLDVSKVAIKAAAKRYPQV----FCVASSHRLPFSDTSMDAIIRIYAPCKAEE-------LARVVKPGGWVITATPGPRHLMELKGLHAPHAEQLEGFTLQQSAELCYPMRLRGDEAVAL................................................................................................................................................................... 230
75 -10.6002xva_A mol:protein length:199 TELLURITE RESISTANCE PROTEIN TEHB  ali model follow..  11  22................................................................................................SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLETIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV------GFPFAFKEGELRRYYE--GWERVKYNE.................................................................................................................................................................... 172

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.