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current user: public |
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Query: 3s7x_A mol:protein length:267 Major capsid protein VP1, from PDB0516 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . | |||||||
# | Score | Template | Links and tools | %id | First | GSHMGGVDVLAAVPLSEETEFKVELFVKPVIGNAEGTTPHYWSISSPLKTAEAANVTPDADTTVCYSLSQVAPPDIPNQVSECDMLIWELYRMETEVLVLPVLNAGILTTGGVGGIAGPQLYFWAVGGQPLDVLGLAPTEKYKGPAQYTVNPKTNGTVPHVYSSSETPKARVTNEKYSIESWVADPSRNDNCRYFGRMVGGAATPPVVSFSNNSTIPLLDENGIGILCLQGRLYITCADLLGVNKNRVHTGLSRFFRLHFRQRRVRN | Last |
1 | -143.000 | 3s7x_A mol:protein length:267 Major capsid protein VP1 | ali model | 100 | 1 | GSHMGGVDVLAAVPLSEETEFKVELFVKPVIGNAEGTTPHYWSISSPLKTAEAANVTPDADTTVCYSLSQVAPPDIPNQVSECDMLIWELYRMETEVLVLPVLNAGILTTGGVGGIAGPQLYFWAVGGQPLDVLGLAPTEKYKGPAQYTVNPKTNGTVPHVYSSSETPKARVTNEKYSIESWVADPSRNDNCRYFGRMVGGAATPPVVSFSNNSTIPLLDENGIGILCLQGRLYITCADLLGVNKNRVHTGLSRFFRLHFRQRRVRN | 267 |
2 | -130.000 | 3s7v_A mol:protein length:277 Major capsid protein VP1 | ali model follow.. | 71 | 1 | GSHMGGVEVLAAVPLSEETEFKVELFVKPVIGNTTAATPHYWSISSAIHDKESVEETPDADTTVCYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLYFWAVGGQPLDVVGVTPTDKYKGPTTYTINPP--GDPRTLHVYNSNTPKAKVTSEYSVESWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCADMLGTANSRIHTPMARFFRLHFRQRRVKN | 277 |
3 | -124.000 | 4x0y_A mol:protein length:272 Major capsid protein | ali model follow.. | 31 | 1 | GSHMGGVEVLE-VKTGVDSITEVECFLTPEMGDPD---EHLRGFSKSISISDTESDSPNKDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTTLMNATHDNGAAKPVQGTSFHFFSVGGEALELQGVVFNYRTTYPDGTIF---PKNATVQSQVMNTEHKAYLDKNKYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMSGSQQWRGLSRYFKVQLRKRRVKN | 272 |
4 | -124.000 | 4poq_A mol:protein length:278 VP1 | ali model follow.. | 32 | 1 | GSHMGGVEVLE-VRTGPDAITQIEAYLNPRMGNNNPT-DELYGYSADINVASSASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIK---NMKPVNQALDPNAKALLDKDGYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGISESQNWRGLPRYFNVTLRKRVVKN | 275 |
5 | -123.000 | 3nxd_C mol:protein length:272 Major capsid protein VP1 | ali model follow.. | 31 | 1 | GSHMGGVEVLE-VKTGVDSITEVECFLTPEMGDPD---EHLRGFSKSISISDTESDSPNRDMLPCYSVARIPLPNLNEDLTCGNILMWEAVTLKTEVIGVTSLGQATHDNGAGKPVQGTSFHFFSVGGEALELQGVLFNYRTKYPDGTI---FPKNATVQSQVMNTEHKAYLDKNKYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHITNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMSGSQQWRGLSRYFKVQLRKRRVKN | 272 |
6 | -123.000 | 4mbx_A mol:protein length:278 Major Capsid Protein VP1 | ali model follow.. | 34 | 1 | GSHMGGVEVLE-VRTGPDAITQIEAYLNPRMGNNIPS-EDLYGYSNSINTAFSASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIK---NMKPGNQGLDPKAKALLDKDGYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVSETQVWRGLPRYFNVTLRKRIVKN | 275 |
7 | -123.000 | 4mj0_A mol:protein length:275 VP1 capsid protein | ali model follow.. | 32 | 1 | GSHMGGVEVLE-VKTGVDAITEVECFLNPEMGDPD---ENLRGFSLKLSAENDSSDSPERKMLPCYSTARIPLPNLNEDLTCGNLLMWEAVTVQTEVIGITSMSQKVHEHGGGKPIQGSNFHFFAVGGDPLEMQGVLMNYRTKYPDGTI---TPKNPTAQSQVMNTDHKAYLDKNNYPVECWVPDPSRNENTRYFGTFTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAADICGLSGTQQWRGLARYFKIRLRKRSVKN | 272 |
8 | -123.000 | 3bwq_A mol:protein length:272 Capsid protein VP1 | ali model follow.. | 32 | 1 | GSHMGGIEVLG-VKTGVDSFTEVECFLNPQMGNPD---EHQKGLSKSLAAEKQTDDSPDKEQLPCYSVARIPLPNINEDLTCGNILMWEAVTVKTEVIGVTAMLNKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPAQTVT---PKNATVDSQQMNTDHKAVLDKDNYPVECWVPDPSKNENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLSGTQQWKGLPRYFKITLRKRSVKN | 272 |
9 | -123.000 | 4pch_A mol:protein length:273 VP1 | ali model follow.. | 43 | 1 | GSHMGGVEVLDTVPLTEDTQYKVEAVLLPNFGKAATT-GNFQSRGLPYTMS----DTLGPGAALCYSVAVINLPEIPDAMCEDTMIVWEAYRLETELLFAPQMASSQRANGTLAGIEGTQLYFWACGGGPLDVIGINPDPERLKVNEALEGP------GNSDVASLQALRKQVNAAFPVELWVADPTKNDNTRYFGRVVGGGVTPPVVSYGNQSTTPLIDENGVGILCTFGSVYLTSADMVGMNQRTVQAGYGRFFRVHCRQRRIKQ | 273 |
10 | -121.000 | 4fmg_A mol:protein length:289 VP1 | ali model follow.. | 32 | 1 | GSHMGGVEVLSVV-TGEDSITQIELYLNPRMGVNSPDTSNWYTYTYDLQPKGSSPDQPIKENLPAYSVARVSLPMLNEDITCDTLQMWEAISVKTEVVGISSLMKRVHDYGAGIPVSGVNYHMFAIGGEPLDLQGLVLDYQTQYPKTTNGGPLGRKMTPKNQGLDPQAKAKLDKDGYPIEVWCPDPSKNENSRYYGSIQTGSQTPTVLQFSNTLTTVLLDENGVGPLCKGDGLFISCADIVGFSGKMALHGLPRYFNVTLRKRWVKN | 289 |
11 | -119.000 | 4pcg_A mol:protein length:276 VP1 | ali model follow.. | 44 | 1 | GSHMGGVEVMETVPLSEDTIYKVEAILLPNFASGSNT-AVYQSRGAPYTF----TDTLDAGSSLCYTLAVVNLPEIPEALCDDTLLVWEAFRVETELIFTPQLGSYIRAQGTPAGVEGSQMYFWACGGSPLDVIGINPDPERMNVAAGLEGPSKEN---QPSVAGIKATRKQVTAAFPIEIWSADPTRNENCRYFGRIVGGSVTPPVVSFGNQSTTPLVDENGVGILCLFGAIYLTSADMLGMQQRSVQAAFGRFFRVHFRQRRVKH | 276 |
12 | -118.000 | 4u5z_A mol:protein length:280 Structural protein VP1 | ali model follow.. | 28 | 1 | GSHMGNIEVLNLV-TGPDSITTIELYLNTRMGQND-ESKDNYGYSEKVTVANSDQDKPTSGEIPTYSTARINLPMLNEDLTCNTLTMWEAVSVKTEVVGVSSLVNMYDDKGIGFPVEGMNFHMFAVGGEPLELQFLTGNYRTDYSANDKLV-VPPIKHQSTQGLNPHYKQKLTKDGFPVECWCPDPSKNENTRYYGSYTGGQSTPPVLQFTNTVTTVLLDENGVGPLCKGDGLYVSCCDIVGFDGDMQYRGLPRYFNILLRKRTVRN | 280 |
13 | -104.000 | 3iys_A mol:protein length:343 Major capsid protein VP1 | ali model follow.. | 31 | 22 | ....GGIEVLD-VKSGPDSITTIEAYLQPRPGQK-------NGYSTVITVQEGYQDAPHSTEVPCYSCARIPLPTINDDITCPTLLMWEAVSVKTEVVGVSSILRAFNGYGGGFTICGPRIHFFSVGGEPLDLQACMQNSKTVYPAP-LIGPGEGERRETAQVLDTGYKARLDKDGYPIECWCPDPAKNENTRYYGNLTGGPETPPVLAFTNTTTTILLDENGVGPLCKGDGLFLSAADVAGTRGRQYWRGLPRYFSIQLRKRNVRN | 288 |
14 | -101.000 | 1sva_1 mol:protein length:361 SIMIAN VIRUS 40 | ali model follow.. | 31 | 30 | ....GGIEVLG-VKTGVDSFTEVECFLNPQMGNPD---EHQKGLSKSLAAEKQTDDSPDKEQLPCYSVARIPLPNINEDLTCGNILMWEAVTVKTEVIGVTAMLNKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPAQTVT---PKNATVDSQQMNTDHKAVLDKDNYPVECWVPDPSKNENTRYFGTYTGGENVPPVLHITNTATTVLLDEQGVGPLCKADSLYVSAVDICGLSGTQQWKGLPRYFKITLRKRSVKN | 297 |
15 | -100.000 | 5fua_1 mol:protein length:362 MAJOR CAPSID PROTEIN VP1 | ali model follow.. | 31 | 31 | ....GGVEVLE-VKTGVDAITEVECFLNPEMGDPD---ENLRGFSLKLSAENDSSDSPERKMLPCYSTARIPLPNLNEDLTCGNLLMWEAVTVQTEVIGITSMSQKVHEHGGGKPIQGSNFHFFAVGGEPLEMQGVLMNYRSKYPDGTI---TPKNPTAQSQVMNTDHKAYLDKNNYPVECWVPDPSRNENARYFGTFTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAADICGLSGTQQWRGLARYFKIRLRKRSVKN | 298 |
16 | -100.000 | 1sid_A mol:protein length:383 POLYOMAVIRUS COAT PROTEIN VP1 | ali model follow.. | 31 | 32 | ....GGMEVLDLV-TGPDSVTEIEAFLNPRMGQPPTEGGQYYGWSRGINLATSTEDSPGNNTLPTWSMAKLQLPMLNEDLTCDTLQMWEAVSVKTEVVGSGSLLDTVNTKGISTPVEGSQYHVFAVGGEPLDLQGLVTDARTKYKEEGVVTIKKKDMVNKDQVLNPISKAKLDKDGYPVEIWHPDPAKNENTRYFGNYTGGTTTPPVLQFTNTLTTVLLDENGVGPLCKGEGLYLSCVDIMGWYDVHHWRGLPRYFKITLRKRWVKN | 317 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013. Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH,Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, HeymannB, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B,Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug;14(8):1211-7. |