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anford Burnham Prebys Medical Discovery Institute

Query: 3qku_A mol:protein length:359 DNA double-strand break repair rad50 ATPase, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYGGSGGIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVSLast
1 -135.0003qku_A mol:protein length:359 DNA double-strand break repair rad50 ATPase  ali model  100  1MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYGGSGGIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS 359
2 -116.0003qkt_A mol:protein length:339 DNA double-strand break repair rad50 ATPase  ali model follow..  98  1MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGG--------------------TEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS 339
3 -75.6005f3w_B mol:protein length:372 DNA double-strand break repair Rad50 ATPase,D  ali model follow..  30  3MILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAGS--NFNYDTIITKGKKSVYVELDFEVNGNNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILG------VDRNMFLNSIYIKQGEIAKFLSLKSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEMESLKARLKEMSNLEKEKEKLTKAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNVECIILDEPTVYLDENRRAKLAEIFRKV-KSIPQMIIITHHRELEDVADVIINVKKDGNVSKVKING 372
4 -71.8003tho_A mol:protein length:382 Probable DNA double-strand break repair Rad50  ali model follow..  20  12MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGI-RYPNSYDYVNRNDGTARLVFQFERGGKRYEIIREINALQRKHNA-KLSEILENGKKAAIAAKPTSVKQEVEKIIEHRTFIRTVFLPQGEIDKLLISPSEITEIISDVFQSKLLKEKMKKLENEISSGGAGGAGGSLEKKLKEMSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEKIASVLKELERLNKVIVFITCDREFSEAFDRKLRITGGVVVNE..... 376
5 -63.3003qkr_A mol:protein length:203 DNA double-strand break repair rad50 ATPase  ali model follow..  97  1MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILA....................................................................................................................................................................... 192
6 -53.3002o5v_A mol:protein length:359 DNA replication and repair protein recF  ali model follow..  13  4VRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL--TGQTDAPRIEQLIQAGETEAYVRADLQQGGSLSIQEVGLGRGRRQLKVDGVTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGGEEMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADLRG---------RRAEELARGSTVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLFGEDPVLLLDDFTAELDPHRRQYLLDLAA---SVPQAIVTGTELAPGAALTLRA-RFTPVADEEMQAEGT 358
7 -47.8003qkr_B mol:protein length:179 DNA double-strand break repair rad50 ATPase  ali model follow..  98  10.............................................................................................................................................................................................KKEIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS 179
8 -45.1004ux3_A mol:protein length:543 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN  ali model follow..  17  2AYIKRVIIKGFKTYRNETINFSPHQNVIIGSNGSGKSNFFAAIRFVL--YSNLKREERQGLIHQGSGSASVEIVFHDPDHEVTIRRTVGLKKDDYQLNDRNEVKLKASLKKMEETEQKKIQINKEMGELNSKLSEMEQERKELEKYNELERNRKIYKRAFENFKKFNERRKDLAERASELDESKDSIQDLIVKLKQQKVNAVDSTFQKVSENFEAVFERRKNDNANDHDESIDVDMDAESNESQNGKDSEIMYTGVSISVSEQLHVEQLSGGQKTVCAIALILAIQMV--DPASFYLFDEIDAALDKQYRTAVATLLKELSKN-AQFICTTFRTDMLQVADKFFRVKYENKISTVIEVN 518
9 -42.2001w1w_A mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1  ali model follow..  16  3.RLVGLELSNFKSYRGVTK-GESNFTSIIGPNGSGKSNMMDAISFVL--SNHLRSNILKDLIYRGVLAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGENETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEKDMEYLSGGEKTVAALALLFAINSY--QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIIT 422
10 -41.6001e69_A mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN  ali model follow..  20  1MRLKKLYLKGFKSFGRSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVF-SKKELRASEKFDMIFAGSENAYVELVFEENGEEITVARELKRTGEN--------------TYYLNGSPVRLKDIRDRFAGTGLGVDFSIVGQGQIDRIVNASEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQK----------------------------------------------LSLLSGGEKALVGLALLFALMEI--KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHT-QFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVE 307
11 -37.4005da9_A mol:protein length:449 Putative uncharacterized protein,Putative unc  ali model follow..  20  1MKIEKLGVRSFGPHHPETIAFNTPLTLIVGYNGSGKTTVIECLKYATTGELPPNSTRNGAFIH-KEVRAQVKLSFRSIGESYVVTRNIQLLVQRNNKRTQKTLEGSGERTVISTRVAELDKLVSEKLPPAILDAVIFCHQDDSLWPMSEPAALKKRFDEIFEAQKYTKVIENIRLLKKKKGDELKILKEREVQDKANKERAEKVDGGAGGAGGELDLKQSTYQGTDIDTIQIRSDVESTTSSDSGTRRNYNYRVSMVKGDTEMDMRGRCSAGQKVLASIIIRLALAESFCANCGLIALDEPTTNLDSDNIRSLAESLHGIIKARQQLIVITHDEEFLDFCDDFYRVKRDEKQNSV.... 438
12 -37.3003zgx_A mol:protein length:426 CHROMOSOME PARTITION PROTEIN SMC  ali model follow..  21  1MFLKRLDVIGFKSFAEISVDFVKGVTAVVGPNGSGKSNITDAIRWVL-SARSLRGGKMEDIIFAGSDSAEVTLTLDNDDHEVSVTRRVYRSGES--------------EFLINNQPCRLKDIIDLFMDSGLGKEAFIISQGKVEEILSSAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNLNRVEDSEQKEDLTEAKNTLFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELRLTDPNDLLHSGVEIIAQ-QNLNLLSGGERALTAIALLFSILKV--RPVPFCVLDEVEAALDEANVFRFAQYLKKYSSD-TQFIVITHRKGTMEEADVLYGVTMQESG-VSKVIS 415
13 -35.8004i99_A mol:protein length:354 Chromosome partition protein Smc  ali model follow..  21  2PYIEKLELKGFKSYKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVL-SAKAMRASRISDLIFAGSKNAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNI------VLQGDITKFIKSPLERRLLIDDISGIAEYDSKKEKALEEEKEKKNVFMR----------------------------------TFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGL--GKDVKRIEAMSGGEKALTALAFVFAIQK--FKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRDVMMANADKIIGVSMRDGVSKV.... 329
14 -33.4003euj_A mol:protein length:483 Chromosome partition protein mukB, Linker  ali model follow..  12  3MKFRSLTLINWNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT--KLKAGVCYAVLETVNSRAQRKFYKLIEASLYGGISSVITKSLRDYLLPENSGVRQAFQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQLQNIAFGQVKGVRLVVNIRDTHSILLNALSDQHEQHKDLFESQKLSFSEALAMLYKRINPHIELGQRMPQTIGEELLDYRNYLDLEVETLRGAYGWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRLLFLDQ-AARLDAMSINTLFELCERL-----QLLIAAPENIRGTTYKLVRKILANQEYVHVV... 477
15 -30.0001qhl_A mol:protein length:227 PROTEIN (CELL DIVISION PROTEIN MUKB)  ali model follow..  14  5GKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQ......................................................................................................................................................................................................................................................................... 98
16 -26.0004ad8_A mol:protein length:517 DNA REPAIR PROTEIN RECN  ali model follow..  13  39.RLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLL------GGRANHDLIRSGEKELLVTGFWGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQEAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSNLHESSKHPTSLVPRGSGSAADPEALDRVEARAQAAEELAGLEEDERDAGSLQADVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARGPLSDVASGGELSRVMLAVST----VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADT-RQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVS.. 481
17 -20.3004aby_A mol:protein length:415 DNA REPAIR PROTEIN RECN  ali model follow..  12  39.RLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLL------GGRANHDLIRSGEKELLVTGFWGDESEADSASRRLSSAGRGVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTK--EAQAYAAAHAAWREAVSRLERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSA---------------LAEPAAYGLSDVLLRFSANPGEELGDVASGGELSRVMLAVS----TVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADT-RQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVS.. 379
18 -17.3002pjz_A mol:protein length:263 Hypothetical protein ST1066  ali model follow..  22  2IQLKNVGITERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL------------------PYSGNIFIN--------------------------------------GMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-------------------------------------------------------------------------------------------RKLYKLSAGQSV------LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGN........ 202
19 -16.9001sgw_A mol:protein length:214 putative ABC transporter  ali model follow..  18  3...SKLEIRDLVGYERITMTIEKGVVNFHGPNGIGKTTLLKTISTYL-------KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKIS----------------------------------------------------------------EDYLKAVASLYGVKVNKNEIMDALESVE-----------------------------------------------------------------------------VLDLKKKLGELSQGTIR------RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR--EELSYCDVNENLHK........... 199
20 -16.7002pcj_A mol:protein length:224 Lipoprotein-releasing system ATP-binding prot  ali model follow..  30  139..........................................................................................................................................................................................................................................................................YELSGGEQQ------RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMK............ 213
21 -16.6002nq2_C mol:protein length:253 Hypothetical ABC transporter ATP-binding prot  ali model follow..  21  5LSVENLGF-YYQAFQQLNFDLNKGILAVLGQNGCGKSTLLDLLLGIH---------------IQGKIEVYQSIGF-------------------------------------------VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK--------------------------------------------------------------------------------------------REFTSLSGGQRQLILIA------RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNTVVFTTHQPNQVVAIANKTLLLNKQNGETRNILT 217
22 -16.4004g1u_C mol:protein length:266 Hemin import ATP-binding protein HmuV  ali model follow..  20  18....HYHVQQQALINDVSLHIASGMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE----------------------------------------------VIQMGRAPYGGSQDRQALQQVMAQTDCLALA-----------------------------------------------------------------------------------------------QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPAVCCVLHDLNLAALADRIMLLAQVACGTPEEVLN 237
23 -16.0001l7v_C mol:protein length:249 Vitamin B12 transport ATP-binding protein btu  ali model follow..  19  3IVMQLQDVAESTRLGPLSGEVRAGILHLVGPNGAGKSTLLARMAGMT------------------SGKGSIQFA----------------------------------QPLEAWSATKLALHRAYLSQQQTPPFATPVWH--YLTLHQHDKTRTELLNDVAGALALDDKLG--------------------------------------------------------------------------------------------RSTNQLSGGEWQRVRLAAVVLQIPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGSGRREEVLT 222
24 -15.7004fi3_C mol:protein length:249 Vitamin B12 import ATP-binding protein BtuD  ali model follow..  19  3IVMQLQDVAESTRLGPLSGEVRAGILHLVGPNGAGKSTLLARMAGMT------------------SGKGSIQFA----------------------------------QPLEAWSATKLALHRAYLSQQQTPPFATPVWH--YLTLHQHDKTRTELLNDVAGALALDDKLG--------------------------------------------------------------------------------------------RSTNQLSGGEWQRVRLAAVVLQIPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGSGRREEVLT 222
25 -15.1002ihy_A mol:protein length:279 ABC transporter, ATP-binding protein  ali model follow..  17  16IQLDQIGRMK---LKKISWQIAKGDKILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR------------------------------------QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------------------------------------------------------------------------------------------QQYIGYLSTGEKQRVMIA------RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-AMIYVTHFIEEITANFSKILLLKD........... 232
26 -14.8001vpl_A mol:protein length:256 ABC transporter, ATP-binding protein  ali model follow..  17  10VVVKDLRIGKKEILKGISFEIEEGIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE---------------------------------------------------------------------------EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----------------------------------------------------------------TEIAGLGEKIKDRVSTYSKGMVR------KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHMLEVEFLCDRIALIHN........... 215
27 -14.7004hzi_A mol:protein length:294 ABC transporter ATP-binding protein  ali model follow..  17  29LSLEKISYKP---LDSVSFEIKTNEHVLLGRNGAGKSTLVNLIYGMIWATSGTIRLFQETYGEIAIQDLRKRIGILDSSQQEN-------------------------------------SIQRKLTVKDTILTGLFHTIGYYRDPSPEEETKTLQILKDSDLLSKK-----------------------------------------------------------------------------------------------DQLYNTLSSGEKKKILFL------RSIVNEPDFLIMDEPCSSLDLTAREDFLGFLKEYHSK-TSLYITHRPEEIPDFYSKAVLLKEIHFGPIEECFT 257
28 -14.6002onk_A mol:protein length:240 Molybdate/tungstate ABC transporter, ATP-bind  ali model follow..  20  1MFLKVRAEKRLGNFRNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ---------------------------------------------------DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD--------------------------------------------------------------------------------------------RKPARLSGGERQ------RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDPILHVTHDLIEAAMLADEVAVMLNGRIVEK.... 208
29 -14.4003tif_A mol:protein length:235 Uncharacterized ABC transporter ATP-binding p  ali model follow..  25  144..........................................................................................................................................................................................................................................................................NQLSGGQQQ------RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGTVVVVTHDINVARFGERIIYLK............ 219
30 -14.4001f3o_A mol:protein length:235 HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROT  ali model follow..  26  144..........................................................................................................................................................................................................................................................................NQLSGGQQQ------RVAIARALANNPPIILADEPTGALDSKTGEKIMQLLKKLNEEDGTVVVVTHDINVARFGERIIYLK............ 219
31 -14.0001b0u_A mol:protein length:262 HISTIDINE PERMEASE  ali model follow..  21  7LHVIDLH-KRYGGHEGVSLQARAGVISIIGSSGSGKSTFLRCINFL-------EKPSEGAIIVNGQN---INLVRDKDGQLKVAD-------------------------------------------------------------------------------------------KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV------------------------IDERAQGKYPVHLSGGQQQRVSIARALAM------EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHV............... 223
32 -13.7003d31_A mol:protein length:348 Sulfate/molybdate ABC transporter, ATP-bindin  ali model follow..  18  2IEIESLS-RKWKNFDNLSLKVESGYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN-----------------------------------------------------SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD--------------------------------------------------------------------------------------------RNPLTLSGGEQQ------RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKTVLHITHDQTEARIMADRIAVVMDGKLIQV.... 209
33 -13.6003fvq_A mol:protein length:359 Fe(3+) ions import ATP-binding protein fbpC  ali model follow..  20  5LHIGHLS-KSFQNTNDISLSLDPGILFIIGASGCGKTTLLRCL-------AGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY-----------------------------------------LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAM-----------------------------------------------------------------------------------------LELTGISELAGRYPHELSGGQQQ------RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGSAVFVSHDREEALQYADRIAVMKQGRILQT.... 220
34 -13.6001g6h_A mol:protein length:257 HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANS  ali model follow..  16  8LRTENIVKYEFKALDGVSISVNKGVTLIIGPNGSGKSTLINVIT-VYFENKDITNKEPAELYHYG-------------VRTFQTPQPLKE------------------------------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA--------------------------------------------------------------------------------------------GELSGGQMKLVEIG------RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV............. 225
35 -13.6004fwi_B mol:protein length:334 ABC-type dipeptide/oligopeptide/nickel transp  ali model follow..  16  5IRVEDLRAVTIKAADGISLDILENSVTIVGESASGKSTIIEAMT---------------KTLPPNGRILSGRVLYK---------------------------------------GKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQ-----------------------------------------------------------------------LSGGMKQRVLIALALLL------DPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKTLIFVTHDIAVAAELADKVAV............. 227
36 -13.5002iw3_A mol:protein length:986 ELONGATION FACTOR 3A  ali model follow..  23  445.............LNKTQLRLKRARRYICGPNGCGKSTLMRAIA--------------NGQVDGFPTQEECRTVYVEHD-----------------------------------------------------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIA-------------------------------------------------------------------------------------------MPISALSGGWK------MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG---ITSITISHDSVFLDNVCEYI............... 609
37 -13.4001z47_A mol:protein length:355 putative ABC-transporter ATP-binding protein  ali model follow..  22  8IEFVGVEKIGARSVRGVSFQIREGMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQN-----------------------------------------------------------------------------ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYA-----------------------------------------------------------------NRFPHELSGGQQQ------RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGTSVFVTHDEEALEVADRVLVLHE........... 214
38 -13.2001oxs_C mol:protein length:353 ABC transporter, ATP binding protein  ali model follow..  22  1..MVRIIVKNVKVFKKGKVVALDNVNIILGPSGAGKTTFMRIIA--------------------------------------------LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT-----------------------------ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-----------------------------------------------------------------NHFPRELSGGQQQ------RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGTLLVVSHDPADIFAIADRVGVLVKGKLVQV.... 222
39 -13.2004hlu_D mol:protein length:268 Energy-coupling factor transporter ATP-bindin  ali model follow..  23  7MGSGRIELNSVYVLKDVNAEFETGIYVVVGKNGSGKTTLLKILAGLL------------------AAAGEIFLD--SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNL---------------------------------------------------------------------------------------------------------------------------SGGQKQ------RLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISN........... 214
40 -13.0002ff7_A mol:protein length:247 Alpha-hemolysin translocation ATP-binding pro  ali model follow..  29  140............................................................................................................................................................................................................................................................................LSGGQRQ------RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG-RTVIIIAHRLSTVKNADRIIVMEKVEQGKHKELLS 226
41 -12.9005eum_A mol:protein length:258 Lipid A export ATP-binding/permease protein M  ali model follow..  29  157............................................................................................................................................................................................................................................................................LSGGQRQ------RLAIARALLRNSPVLILDEATSALDTESERAIQSALEELKKD-RTVVVIAHRLSTIENADEILVIDHRERGNHKTLLE 243
42 -12.9005dgx_A mol:protein length:256 Lipid A export ATP-binding/permease protein M  ali model follow..  26  156............................................................................................................................................................................................................................................................................LSGGQRQ------RISIARALLKNAPVLIFDEATSALDNESERVVQQALESLTKS-CTTIVIAHRLSTVENADKIVVMDGVESGKHQELLE 242
43 -12.8003j16_B mol:protein length:608 Rli1p  ali model follow..  18  67..FDAIQIINLPTNLEAHVTHRYSVLGLVGTNGIGKSTALK----ILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKL---------------------------------------------------------------------------------------------------------------------------SGGELQ------RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTL 306
44 -12.7004rvc_A mol:protein length:245 ABC transporter ATP-binding protein  ali model follow..  15  1..MTLLEVKDLSGLEDVTFVVDRGMVALIGLNGAGKSTTIKHII---------------GLMEPRRGAISINGY------------------------------------------------------------RLADGPETYRRQFAYIPETPVLYEELTLEEHLRLAAMAYGLSEAEYERRLPPLLREFRLERRL-----------------------------------------------------------------SSFPAHFSKGMKQ------KVMIVCAFLLEPPLYIIDEPFLGLDPLAIHALLERMNEQKAKGAGILLSTHILATAERYCDSFVILHNGR........ 211
45 -12.7005idv_A mol:protein length:279 Lipid A export ATP-binding/permease protein M  ali model follow..  24  171............................................................................................................................................................................................................................................................................LSGGQRQ------RIAIARAILKNAPILILDEATSALDNESEHFIQQAFDEAMQD-RTTIVIAHRLSTIENADRIVVMDRVEQGTHQELLA 257
46 -12.7003gd7_A mol:protein length:390 Fusion complex of Cystic fibrosis transmembra  ali model follow..  20  19....QMTVKDLTILENISFSISPGRVGLLGRTGSGKSTLLSAFL----------------------RLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV-------------------------------------------------------------------------------------------------------------------LSHGHKQLMCLA------RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD-CTVILCEARIEAMLECDQFLVIEE........... 228
47 -12.7003tui_C mol:protein length:366 Methionine import ATP-binding protein MetN  ali model follow..  17  15IKLSNIT-RTIQALNNVSLHVPAGIYGVIGASGAGKSTLIRCV---------------NLLERPTEGSVLVD--------------------------------GQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL-----------------------------------------------------------------------------------------SGGQKQ------RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGTILLITHEMDVVKRICDCVAVISNEQDTVSEVFS 243
48 -12.5003ozx_A mol:protein length:538 RNase L inhibitor  ali model follow..  13  12........NGFKLF-GLPTPKNNTILGVLGKNGVGKTTVLKILAGEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQ------KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKATFIIDHD--HDYIADRIIVFK............ 460
49 -12.4001jj7_A mol:protein length:260 PEPTIDE TRANSPORTER TAP1  ali model follow..  20  33.............LQGLTFTLRPGVTALVGPNGSGKSTVAALL----------------------------QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQ----------------------------KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ------------------------------------------------------------------------------LSGGQRQ------AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRVLLITQHLSLVEQADHILFLEGREGGTHQQLME 243
50 -12.4001yqt_A mol:protein length:538 RNase l inhibitor  ali model follow..  18  6..SGLVPRSHMEQLEDCVHRYGVNVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIR----------------RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN--------------------------------------------------------------------------------------------------------------------------EREIQHLSGGELQ------RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPG....... 230
51 -12.4004hlu_A mol:protein length:268 Putative ABC transporter ATP-binding protein  ali model follow..  24  2..MGRIEVVNVKALENVSLVINEGCLLVAGNTGSGKSTLLQIV--GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQF------------------------------------------------------------------AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFF--------------------------------------------------------------------------LSGGEKR------RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDETVINHVDRVVVLEK........... 215
52 -12.4004huq_B mol:protein length:279 Energy-coupling factor transporter ATP-bindin  ali model follow..  20  1MTENIISVDHLPALTDVSFTVHAG--AIVGHNGSGKSTLAKSL---------------DGLLPFTQGSVTVGGITLTPETVWQVREQIGMIFQNPDNQFVGATVEDDVAFGLENRQISRDEMVPRVQAALAQVGMTSFAQREPSSL---------------------------------------------------------------------------------------------------------------------------SGGQKQ------RVALAGIVAIAPKILILDEATSMLDPQGRIEMLAIVRQLRQQQNTVISITHDIDEAASADRVLVIDD........... 215
53 -12.2002ixe_A mol:protein length:271 ANTIGEN PEPTIDE TRANSPORTER 1  ali model follow..  19  17VKFQDVSFANVQVLQGLTFTLYPGVTALVGPNGSGKSTVAALL----------------------------QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVA----------------------------MESGAHDFISGFPQGYDTEVGETGNQ------------------------------------------------------------------------------LSGGQRQ------AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRVLLITQQLSLAERAHHILFLKECEQGTHLQLME 245
54 -12.2004yms_J mol:protein length:240 ABC-type polar amino acid transport system, A  ali model follow..  26  135..........................................................................................................................................................................................................................................................................IKLSGGQKQ------RLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRV............... 206
55 -12.2002pzg_A mol:protein length:241 Cystic fibrosis transmembrane conductance reg  ali model follow..  21  18....EVVMENVT-LKDINFKIERGQLLVAGSTGAGKTSLLMMIM---------------GELEPSEGKIKHSGRISFCSQFSWIMPGTIK-----------------------------------------------------ENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE-----------------------------------------------------------------------------------ITLSGGQRARISLA------RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHE........... 216
56 -12.0001mv5_A mol:protein length:243 Multidrug resistance ABC transporter ATP-bind  ali model follow..  25  140............................................................................................................................................................................................................................................................................ISGGQRQ------RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG-RTTLVIAHRLSTIVDADKIYFIEKTGSGKHNELVA 226
57 -11.9002olj_A mol:protein length:263 Amino acid ABC transporter  ali model follow..  22  19.....IDVHQLKKSKGINVHIREGVVVVIGPSGSGKSTFLRCL-----------------------------------------------------------------------------NLLEDFDEGEIIIDGINLKAKDTN-----------------------------------LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-------------------------LKDKAHAYPDSLSGGQAQ------RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD--RVLFMDGGYIIE... 233
58 -11.9003bk7_A mol:protein length:607 ABC transporter ATP-binding protein  ali model follow..  17  81..FNAISIVNLPEQLDEDCVHRYGVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR--------------AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELEN--------------------------------------------------------------------------------------------------------------------------DRELHQLSGGELQ------RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPG....... 306
59 -11.8003gfo_A mol:protein length:275 Cobalt import ATP-binding protein cbiO 1  ali model follow..  21  1MSLEDLKVEELHALKGINMNIKRGEVTILGGNGVGKSTLFQNF---------------NGILKPSSGRILFD-------------------------------------------NKPIDYSRKGIMKLRESIGIVF-------------QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-----------------------------------------------------------------DKPTHCLSFGQKK------RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGTIIIATHDDIVPLYCDNVFVMKE........... 219
60 -11.7005d3m_B mol:protein length:287 Energy-coupling factor transporter ATP-bindin  ali model follow..  20  2....AIKFENVIGLDQLNFSLEEGFIALVGHTGSGKSTLMQHF---------------NALLKPTSGKIEIA------------GYTITPETGNKGLKDLRRKVS-------------AFQFSEAQLFENTVLKDVEYGPRNFGFSEDEAREAALKWLKKVGLKDDLIEHSPFD----------------------------------------------------------------------------------------------LSGGQMR------RVALAGVLAYEPEIICLDEPAAGLDPMGRLEMMQLFKDYQAAGHTVILVTHNDDVADYADDVLALEH........... 220
61 -11.7004u00_A mol:protein length:244 Amino acid ABC transporter, ATP-binding prote  ali model follow..  22  16.........PLHVLKGIHLEVAPGKLVIIGPSGSGKSTLIRTI-----------------------------------------------------------------------------NRLEDFQEGEVVVDGLSVKDD------------------------------------RALREIRREVGMVFQQFNLFPHMTVLENVTLAPMRVRRWPREKAEKKALELLERV-------------------------ILDQARKYPAQLSGGQQQ------RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQGGMTMVVVTHEMGFAREVAD--RVVFMDGGQIVEEGR 221
62 -11.7004yer_A mol:protein length:328 ABC transporter ATP-binding protein  ali model follow..  21  14......KFGDFEAVKGVSFSVKKGIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLK---------------------------------------------------------------------------EPREVRRKIGIVFQDQSLDRELTAYENMYIHGKIYGYGGEKLKKRILEL-----------------------------------------------------------------LEFVELLEFKDKPVKTFSGGMAR------RLEIARSLIHEPEVLFLDEPTIGLDPHTRAHMWEYISKMKKEHNMTIFLTYMDEAEQLADRVAIIDH........... 212
63 -11.6002cbz_A mol:protein length:237 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1  ali model follow..  21  128............................................................................................................................................................................................................................................................................LSGGQKQRVSLA------RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKTRILVTHSMSYLPQVDVIIVMSG........... 203
64 -11.6003vx4_A mol:protein length:273 Putative ABC transporter, ATP-binding protein  ali model follow..  19  52..............SDINLSIKKGSKVLVGASGSGKTTLAKLIV------------------------------YEPNKGIVRINGNDLKVIDKTALRRHISYLPQQAYVFSGSIMDNLVLGAKEGTSQEDIIRAC----------------------------EIAEIRSDIEQMPQGYQTELSD--------------------------------------------------------------------------------AGISGGQKQ------RIALARALLTQAPVLILDAATSSLDILTEKKIISNLLQMTEK--TIIFVAHRLSISQRTDEVIVMDQVEQGTHKELLA 257
65 -11.6001q3h_A mol:protein length:286 Cystic fibrosis transmembrane conductance reg  ali model follow..  23  55..............KNINLNIEKGEMLITGSTGSGKTSLLMLIL---------------GELEASEGIIKHSGRVSFCSQFSWIMPGTIK-----------------------------------------------------ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-----------------------------------------------------------------------------------VTLSGGQRARISLA------RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ........... 234
66 -11.5005c73_C mol:protein length:564 Protein glycosylation K  ali model follow..  18  347...QELKICNLSGYKNLNLNIKKGEKIFIGESGCGKSTLVDLII------------------------------LKPKEGQILIDKQELNASNAKNYRQKIGYIPQNIYLFNDSIAKNIT--------------------------------DAVDEEKLNKVIKQANLEHFIKNLPQGVQTKVGDGGSN------------------------------------------------------------------------------LSGGQKQ------RIAIARALYLEPEILVLDQATSALDTQSEAKIMDEIYKISKD-KTMIIIAHRLSTITQCDKVYRLEH........... 557
67 -11.5004ry2_A mol:protein length:730 ABC-type bacteriocin transporter  ali model follow..  19  488....DIEFRNFR-LKNINLTIPKGTVAIVGESGSGKTTLAKLLM------------------------------YSPEKGDILINGHSIKNISLELIRKKIAFVSQDVFIFSGTVKENLCLGNENVD-----------------------------MDEIIKAAKMANAHDFIEKLPLKYDTFLNESGAN------------------------------------------------------------------------------LSEGQKQ------RLAIARALLKKPDILILDEATSNLDSITENHIKDAIYGLEDD-VTVIIIAHRLSTIVNCDKIYLLKDVESGSHTELIA 712
68 -11.5001xmi_A mol:protein length:291 Cystic fibrosis transmembrane conductance reg  ali model follow..  22  55..............KDINFKIERGQLLVAGSTGAGKTSLLMMIM---------------GELEPSEGKIKHSGRISFCSQFSWIMPGTIK-----------------------------------------------------ENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE-----------------------------------------------------------------------------------ITLSGGQRARISLA------RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHE........... 234
69 -11.4002ghi_A mol:protein length:260 transport protein  ali model follow..  24  156............................................................................................................................................................................................................................................................................LSGGERQ------RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIAHRLSTISSAESIILLNKVEKGTHKDLLK 242
70 -11.3002bbo_A mol:protein length:291 Cystic fibrosis transmembrane conductance reg  ali model follow..  20  41LSFSNLSLLGTPVLKDINFKIERGQLLVAGSTGAGKTSLLMMIM---------------GELEPSEGKIKHSGRISFCSQFSWIMPGTIK-----------------------------------------------------ENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE-----------------------------------------------------------------------------------ITLSEGQQAKISLA------RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHE........... 234
71 -11.3005do7_A mol:protein length:666 ATP-binding cassette sub-family G member 5  ali model follow..  21  65...TRQILKDVSLYVE-----SGQIMCILGSSGSGKTTLLDAMSGRL------------------GRAGTFLGEVYVNGRALR--------------------------------REQFQDCFSYVLQSDTLLSSLTVRE------------------TLHYTALLAIRRGNPGSFQKKVEAVMAELSLSHVADRL-----------------------------------------------------------------GNYSLGGISTGERRRVSIAAQLLQ------DPKVMLFDEPTTGLDCMTANQIVVLLVELARRNRIVVLTIHQPELFQLFDKIAILSF........... 268
72 -11.2005d7t_A mol:protein length:300 Energy-coupling factor transporter ATP-bindin  ali model follow..  18  14.....ISFDHVTTYPDSPRPALSDLSFLIGHNGSGKSTVSKLINGLLAPDDLDKS------------SITVDGVKLGADTVWEVREKVGIVFQNPDNQFVGATVSDDVAFGLENRAVPRPEMLKIVAQAVADVGMADYADSEPSNL---------------------------------------------------------------------------------------------------------------------------SGGQKQ------RVAIAGILAVKPQVIILDESTSMLDPEGKEQILDLVRKIKEDNNTVISITHDLEEAAGADQVLVLDD........... 226
73 -11.2005do7_B mol:protein length:685 ATP-binding cassette sub-family G member 8  ali model follow..  22  86...CELGIQNLSFKVR-----SGQMLAIIGSSGCGRASLLDVIT----GRGHGGKIKSGQIWINGQPS----------------------------------------------SPQLVRKCVAHVRQHNQLLPNLTVRET-------------------------------------------------------------------AFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCADTRV---------------GNMYVRGLSGGERRRVSIGVQLLW------NPGILILDEPTSGLDSFTAHNLVKTLSRLAKGNRLVLISLHQPDIFRLFDLVLLMTS........... 290
74 -11.2004huq_A mol:protein length:290 Energy-coupling factor transporter ATP-bindin  ali model follow..  20  2....AIAFEHVTALTDVSLTVPDRYLAIIGHTGSGKSTLIQQL---------------NALLKPTSGTIKID------------EFTITPETTNAALKPLRQHVG-------------VFQFPENQLFEETVRQDIAFGPKNFGMADADALALADEMLTTVGLDQSYAERSPFE----------------------------------------------------------------------------------------------LSGGQMR------RVAIAGVLAMQPKVLVLDEPTAGLDPQGRQEMMRLFARLHQEQGTIVLVTHQEDVAQYAEQVAVMHE........... 221
75 -11.0002it1_A mol:protein length:362 362aa long hypothetical maltose/maltodextrin  ali model follow..  21  1..MVEIKLENFTALNNINLKIKDGFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN-----------------------------------------------------------------------------ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL------------------------------------------------------------------NRYPWQLSGGQQQ------RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGTTVYVTHDQAEALAMADRIAVIREGEILQV.... 215
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]