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3iegA
Query: 3ieg_A mol:protein length:359 DnaJ homolog subfamily C member 3, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQKRLast
1 -103.0003ieg_A mol:protein length:359 DnaJ homolog subfamily C member 3  ali model  100  1ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQKR 359
2 -89.0002y4t_A mol:protein length:450 DNAJ HOMOLOG SUBFAMILY C MEMBER 3  ali model follow..  96  18ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 376
3 -68.1002gw1_A mol:protein length:514 Mitochondrial precursor proteins import recep  ali model follow..  14  4KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLTATPTELSTQPAKERKDKKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL------------AYRENKFDDCETLFSEAKRKFPEAPE----VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE. 467
4 -65.2003hym_B mol:protein length:330 Cell division cycle protein 16 homolog  ali model follow..  12  2................SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG--------------HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV------------GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE. 322
5 -64.9003r9a_B mol:protein length:328 Peroxisomal targeting signal 1 receptor  ali model follow..  14  23.DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL------------GISCINLGAHREAVEHFLEALNMQRKSRG----PRGEGGAMSENI-----------------------WSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ............... 328
6 -64.7003cv0_A mol:protein length:327 Peroxisome targeting signal 1 receptor PEX5  ali model follow..  11  1................GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH---------------AALAVSHTNEHNANAALASLRAWLLSQPQYEQLVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL------------GATLANGNRPQEALDAYNRALDINPGYVR----VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEARMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSML............. 326
7 -64.1003cvq_A mol:protein length:327 Peroxisome targeting signal 1 receptor PEX5  ali model follow..  11  1................GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARALDPADIAVH---------------AALAVSHTNEHNANAALASLRAWLLSQPQYEQLVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL------------GATLANGNRPQEALDAYNRALDINPGYVR----VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEARMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSML............. 326
8 -63.7001w3b_A mol:protein length:388 UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUC  ali model follow..  14  31DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLTQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL------------ANALKEKGSVAEAEDCYNTALRLCPTHAD----SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD.... 388
9 -62.9001fch_A mol:protein length:368 PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR  ali model follow..  14  62RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL------------GISCINLGAHREAVEHFLEALNMQRKSRGMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG.................................................... 365
10 -61.6003v6p_A mol:protein length:442 dHax3  ali model follow..  23EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRDGGKQALETVQRLLPVLCQAHGLTPEQVV----AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVA. 417
11 -61.2002xpi_A mol:protein length:597 ANAPHASE-PROMOTING COMPLEX SUBUNIT CUT9  ali model follow..  13  199.EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV---------------GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV------------AFNKSDMQTAINHFQNALLLVKKTQSNEAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE....... 596
12 -61.1003fp2_A mol:protein length:537 TPR repeat-containing protein YHR117W  ali model follow..  15  23AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSRGSQVLPSNTSLASFFGIFLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTEAEILTDRGDFDTAIKQYDIAKRLEEVQEKIILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAEAAKIQKR 513
13 -60.0003v6t_A mol:protein length:499 dHax3  ali model follow..  64EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRDGGKQALETVQRLLPVLCQAHGLTPEQVV----AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVA. 458
14 -60.0001xnf_A mol:protein length:275 Lipoprotein nlpI  ali model follow..  12  3TSWRKSEVLAVPLQPTLQQEVILARMEQILATDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------------------------------------------------HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-------------EQTLMERLKADATDNTSLAEHLSE----TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ............................ 274
15 -57.3003uq3_A mol:protein length:258 Heat shock protein STI1  ali model follow..  18  3SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK--------------------------------------------------SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG--------------------------------------------------YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ.. 258
16 -57.1003u4t_A mol:protein length:272 TPR repeat-containing protein  ali model follow..  14  2.NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIESKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-------------------------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD---------PDTKQGLAKPYYEKLIEVCA------------------------------PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE........ 266
17 -54.2002pl2_A mol:protein length:217 Hypothetical conserved protein TTC0263  ali model follow..  17  3TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALGYLEQALSVLKDAERVNPRYAPLHLQRGLV---------------YALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA................................................................................................................................................... 209
18 -51.7002q7f_A mol:protein length:243 YrrB protein  ali model follow..  16  2.........................GSSSSGLVPRGSHMASMTGGQQMEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY---------------GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA--------------------------------------------------FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL............................................ 230
19 -51.0004abn_A mol:protein length:474 TETRATRICOPEPTIDE REPEAT PROTEIN 5  ali model follow..  11  63...SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-------SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLNPKISQQALSAYAQAEKVDRSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL------------LEFLSRLTSLLESKGKTKPKKLQS----MLGSLRPAHLGPCGDGRYQSASGQKMTLELQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNVVQSWGVLIGDSV. 412
20 -49.2003asd_A mol:protein length:200 MamA  ali model follow..  18  1.............................MGNDDIRQVYYEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL---------------GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPRGSSA............................................................................................................................. 190
21 -48.8003urz_A mol:protein length:208 Uncharacterized protein  ali model follow..  14  2QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN------------------VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM---------------QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILRIEKEVNR....................................................................................................................... 208
22 -48.4003asg_A mol:protein length:186 MamA  ali model follow..  19  1.............................MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT---------------VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR................................................................................................................................. 186
23 -48.2003as8_A mol:protein length:186 Magnetosome protein MamA  ali model follow..  18  1.............................MGNDDIRQVYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVAT---------------VLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELDERSAVELALVPR................................................................................................................................. 186
24 -48.1002fi7_A mol:protein length:265 type 4 fimbrial biogenesis protein PilF  ali model follow..  13  2............................GSSSSGLVPRGSHMASMTGGQQMGRTSGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ---------------TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV--------------------------------------------------ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE........... 258
25 -47.8002ho1_A mol:protein length:252 Type 4 fimbrial biogenesis protein PilF  ali model follow..  12  2....GSSSSGLV---PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF---------------LYEQKRYEEAYQRLLEASQLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK------------VFEDRDTAASYGLQLKRLYPGSLEY......................................................................................... 239
26 -46.8003mkr_A mol:protein length:291 Coatomer subunit epsilon  ali model follow..  12  1...DELFDVKNAFY-IGSYQQCINEAQRVKPSSPERVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVD-------------VTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL-----ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGKLQDAYYIFQEMADKCSPTLLLLNGQAAC------------HMAQGRWEAAEGVLQEALDKDSGHPE----TLINLVVLSQHLGKPPEVTNRYLSQLDAHRSHPFI----KEYRAKENDFDRLVLQYAPS........................... 291
27 -46.6003sz7_A mol:protein length:164 Hsc70 cochaperone (SGT)  ali model follow..  12  9PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL----------------ETTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSLAS............................................................................................................................................................................................ 163
28 -46.3001hh8_A mol:protein length:213 NEUTROPHIL CYTOSOL FACTOR 2  ali model follow..  16  4VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN---------------------------------QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK------------IDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQLAK----------KDYLGKATVVASVVDQDS........................................................................................... 213
29 -45.4001wm5_A mol:protein length:208 Neutrophil cytosol factor 2  ali model follow..  17  9VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN---------------------------------QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQLYEPVVIPVGKLFRPNERQVAQLAKKDYLGKAT............................................................................................................................ 208
30 -45.1001o1r_A mol:protein length:380 Protein farnesyltransferase alpha subunit  ali model follow..  10  30PPPPAQQPQEEEMAAEAGEAAASPMDDGFLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQ--------------KDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFV------ISNTTGYSDRAVLEREVQYTLEMIKLVPHNES----AWNYLKGILQDRG-LSRYPNLLNQLLDLQPSHSSPYLIAFLVDILENQCDNKEDILNKALELDTIRKEYWRYIGRSLQSKHSRESD 375
31 -44.4002vq2_A mol:protein length:225 PUTATIVE FIMBRIAL BIOGENESIS AND TWITCHING MO  ali model follow..  12  8..SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCRLNRPAESMAYFDKALADP-------------TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANPYSEELQTVLT.................................................................................................................................. 223
32 -44.2002fo7_A mol:protein length:136 SYNTHETIC CONSENSUS TPR PROTEIN  ali model follow..  24  1..AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY---------------NLGNAYYKQGDYDEAIEYYQKALELDPRS.............................................................................................................................................................................................................. 136
33 -44.1002l6j_A mol:protein length:111 TPR repeat-containing protein associated with  ali model follow..  14  2SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGYDR......................................................................................................................................................................................................................................................... 110
34 -44.0003fwv_A mol:protein length:128 Hsc70/Hsp90-organizing protein  ali model follow..  20  2KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPKVLKKCQQAEKILKE................................................................................................................................................................................................................................................ 127
35 -43.9003ro2_A mol:protein length:338 G-protein-signaling modulator 2  ali model follow..  14  3ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDSAIYSQLGNAYFYLHDYAKALEYHHHDLTLQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP--------------EDVRNALQAAVDLYEENLSLRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDREAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE..................... 335
36 -43.8001hxi_A mol:protein length:121 PEROXISOME TARGETING SIGNAL 1 RECEPTOR PEX5  ali model follow..  18  16.YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL............................................................................................................................................................................................................................................................ 121
37 -43.4003upv_A mol:protein length:126 Heat shock protein STI1  ali model follow..  13  3.KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ............................................................................................................................................................................................................................................. 123
38 -43.1003kd7_A mol:protein length:125 CTPR390  ali model follow..  23  7NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ................................................................................................................................................................................................................................................... 122
39 -42.2001na0_A mol:protein length:125 designed protein CTPR3  ali model follow..  24  7NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ................................................................................................................................................................................................................................................... 122
40 -42.1003sf4_A mol:protein length:406 G-protein-signaling modulator 2  ali model follow..  13  7ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDSAIYSQLGNAYFYLHDYAKALEYHHHDLTLQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGRDALQAAVDFYEENLSLRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL------GNTYTLLQDYEKAIDYHLKHLAIAQELNDREGRACWSLGNAYTALGNHDQAMHFAEKHLEISLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPRRHSMENMELMKLTPEK.... 406
41 -41.8001elw_A mol:protein length:118 TPR1-DOMAIN OF HOP  ali model follow..  25  3.QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA................................................................................................................................................................................................................................................... 117
42 -41.6002wqh_A mol:protein length:125 CTPR3Y3  ali model follow..  23  7NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQ................................................................................................................................................................................................................................................... 122
43 -41.4002kck_A mol:protein length:112 TPR repeat  ali model follow..  13  4QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDNKDVWAAKADALRYIEGKEVEAEIAEARAKLE.................................................................................................................................................................................................................................................................. 106
44 -41.3001jcq_A mol:protein length:382 PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT  ali model follow..  2...........AATEGVGEAAQGGEPGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--------------KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV------ISNTTGYNDRAVLEREVQYTLEMIKLVPHNES----AWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDMLENQCDNKEDILNKALELDTIRKEYWRYIGRSLQSKHSTEN. 371
45 -41.1001elr_A mol:protein length:131 TPR2A-DOMAIN OF HOP  ali model follow..  21  3.QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERL............................................................................................................................................................................................................................................ 131
46 -41.1003q47_B mol:protein length:137 STIP1 homology and U box-containing protein 1  ali model follow..  19  7PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD......................................................................................................................................................................................................................................................... 116
47 -40.8003ugm_A mol:protein length:1047 TAL effector AvrBs3/PthA  ali model follow..  37..SDASPAAQVDLRTLGYSQQQQEKIKKVRSTVAQHHEALVGHGFTHAHIAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPP------------LDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQ------------ALETVQRLLPVLCQAHGLTPDQVV----AIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR. 374
48 -40.3002bug_A mol:protein length:140 SERINE/THREONINE PROTEIN PHOSPHATASE 5  ali model follow..  21  13KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA............................................................................................................................................................................................................................................. 134
49 -40.3002vyi_A mol:protein length:131 SGTA PROTEIN  ali model follow..  20  10AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL................................................................................................................................................................................................................................................... 125
50 -40.0001a17_A mol:protein length:166 SERINE/THREONINE PROTEIN PHOSPHATASE 5  ali model follow..  17  11KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL........................................................................................................................................................................................................... 166
51 -39.7002lni_A mol:protein length:133 Stress-induced-phosphoprotein 1  ali model follow..  18  8DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM................................................................................................................................................................................................................................................... 123
52 -39.5003pe3_A mol:protein length:723 UDP-N-acetylglucosamine--peptide N-acetylgluc  ali model follow..  12  1............................GPGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK---------------EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH-------------PHHSMLYPLSHGFRKAIAERHGNLC----LDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVK............. 286
53 -39.5002vgy_A mol:protein length:148 CHAPERONE SYCD  ali model follow..  14  1................GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYEEGAVMDIKEPRFP---------------FHAAECLLQKGELAEAESGLFLAQELKPEFKELSTRVSSMLEAIKLKKEMKHE....................................................................................................................................................................................... 148
54 -39.4002xcb_A mol:protein length:142 REGULATORY PROTEIN PCRH  ali model follow..  15  2...........................................................................................................................................................................SDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--------------------------------------------------FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALQPAHEALAARAGAMLEAVTARKDR 142
55 -39.0002vgx_A mol:protein length:148 CHAPERONE SYCD  ali model follow..  14  1................GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIKEPRFP---------------FHAAECLLQKGELAEAESGLFLAQELKPEFKELSTRVSSMLEAIKLKKEMKHE....................................................................................................................................................................................... 148
56 -38.9003k9i_A mol:protein length:117 BH0479 protein  ali model follow..  13  2..............VLGLEAQAVPYYEKAIASGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD---------------------------------ETIQSYKQAILFYADKLDETWK........................................................................................................................................................................................................ 116
57 -38.3002dba_A mol:protein length:148 Smooth muscle cell associated protein-1, isof  ali model follow..  23  26SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDADQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSSG............................................................................................................................................................................................................................................... 148
58 -37.8003ulq_A mol:protein length:383 Response regulator aspartate phosphatase F  ali model follow..  11  10SSIGEKINEWYMYIRRFSIPDAEYLRREIKQEDQDLHLYYSLMEFRHNLMLEYEEQPRLSDLLLEIDKKQARLNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD---------RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEINIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI------TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL..................... 371
59 -37.7002kat_A mol:protein length:115 uncharacterized protein  ali model follow..  17  1..................MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ-------------QVVKELQVFLRRLAREDAL............................................................................................................................................................................................................................ 108
60 -37.5002e2e_A mol:protein length:177 Formate-dependent nitrite reductase complex n  ali model follow..  14  8AEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASTAQTRAMIDKALALDSNEITA---------------LMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRS.......................................................................................................................................................................................... 168
61 -37.5001na3_A mol:protein length:91 designed protein CTPR2  ali model follow..  23  7NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG.................................................................................................................................................................................................................................................................................. 91
62 -37.4003ks2_A mol:protein length:151 Chaperone protein ipgC  ali model follow..  14  30DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE............................................................................................................................................................................................................................................. 151
63 -37.0002c2l_A mol:protein length:281 CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN  ali model follow..  10  2PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCIDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA--------------MKEVIDAF...................................................................................................... 271
64 -36.9003gyz_A mol:protein length:151 Chaperone protein ipgC  ali model follow..  15  34DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ................................................................................................................................................................................................................................................. 151
65 -35.9002hr2_A mol:protein length:159 Hypothetical protein  ali model follow..  1...................................................................................................................................................................................GMKPLKEVVGAYLALAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA............................... 158
66 -35.7001zu2_A mol:protein length:158 Mitochondrial import receptor subunit TOM20-3  ali model follow..  2..PLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKH--------------------------------------NFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQLGGS................................................................................................................................................................................... 152
67 -34.9002avp_A mol:protein length:70 synthetic consensus TPR protein  ali model follow..  20  1GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS................................................................................................................................................................................................................................................................................................. 70
68 -34.7003q15_A mol:protein length:378 Response regulator aspartate phosphatase H  ali model follow..  11  10SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDISIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--------LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED..................... 368
69 -34.4003ly7_A mol:protein length:372 Transcriptional activator cadC  ali model follow..  2...............SGMKETAAAKFERQHMDSPDLGTDDDDKAMASSGLNPRDIDINMVNKSCNSWSSPYQLSYAIGLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRA--QCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP----LDEKQLAALNTEIDNIVTLPELNNL--SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF--QTSVPY. 354
70 -34.3003ma5_A mol:protein length:100 Tetratricopeptide repeat domain protein  ali model follow..  19  5EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQLSELQDAKLKAEGLE............................................................................................................................................................................................................................................................................... 94
71 -33.9002kc7_A mol:protein length:99 bfr218_protein  ali model follow..  18  2....DQLKTIKELINQGDIENALQALEEFLQTEPVGDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKM-VMDILNFYNKDMYNQLE....................................................................................................................................................................................................................................................................... 93
72 -33.4002r5s_A mol:protein length:176 Uncharacterized protein VP0806  ali model follow..  14  2................................NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKS---------------LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDVKKTFMDILSALGQGNAIASKYRRQLY............................................................................................................................................... 172
73 -33.0002fbn_A mol:protein length:198 70 kDa peptidylprolyl isomerase, putative  ali model follow..  22  27....................................................................................................................................................................................................................................EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 169
74 -32.6003rkv_A mol:protein length:162 putative peptidylprolyl isomerase  ali model follow..  20  11..VEALRQKGNELFVQKDYKEAIDAYRDALELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM.................................................................................................................................................................................................................................. 159
75 -32.5001hz4_A mol:protein length:373 MALT REGULATORY PROTEIN  ali model follow..  12  14..AEFNALRAQVAINDGNPDEAERLAKLALEELPPGIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH-----------------------------------------LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV-----RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL........................ 322

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Doukhanina EV, Chen S, van der Zalm E, Godzik A, Reed J, Dickman MB. Identification and functional characterization of the BAG protein family inArabidopsis thaliana. Biol Chem. 2006 Jul 7;281(27):18793-801. Epub 2006 Apr 24.