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Query: 2oev_A mol:protein length:705 Programmed cell death 6-interacting protein, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GIDPFTHMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARLast
1 -197.0002oev_A mol:protein length:705 Programmed cell death 6-interacting protein  ali model  100  1GIDPFTHMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 705
2 -113.0002oew_A mol:protein length:380 Programmed cell death 6-interacting protein  ali model follow..  98  6.LYFQGHMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMV................................................................................................................................................................................................................................................................................................................................................... 370
3 -99.2003rau_A mol:protein length:363 Tyrosine-protein phosphatase non-receptor typ  ali model follow..  28  1GEFEAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYG---ENPEAYNEELKKLELLRQNAVRVPRD--FEGCSVLRKYLGQLHYLQSRVPMGSGEAAVPVTWTEIF-------SGKSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQA----YSVDMSRQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALENLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQDALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPATGPDIFAKLV................................................................................................................................................................................................................................................................................................................................................... 363
4 -97.9001zb1_A mol:protein length:392 BRO1 protein  ali model follow..  23  2..AMGSMKPYLFDLKLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGELAP--SSLSEQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQ--KGLKYTQHTLAFEKSCTLFNIAVIFTQIA---RENINEDYKNSIANLTKAFSCFEYLSENFLNS----PSVDLQSENTRFLANICHAEAQELFVLKLLNDSKQYTLISKLSRATCNLFQKCHDFMKEAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSLPFKTWFIDFDGFKETLEKKQKELIKDNDFIYHESVPAVVQVDSIKALDAIKSPTWEKILEPKYDSLYRGIIPLDVYEKESIYSEEKATLLR............................................................................................................................................................................................................................................................................................................................... 392
5 -82.3003um3_A mol:protein length:411 BRO1 domain-containing protein BROX  ali model follow..  18  5..........FHRNPLKATAPVSF-----NYYGVVTG---PSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSLDESTQESKLNFKWTDTLQ------GQVPSAQQDAVFELISMGFNVALWYTKYASGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGEFRKLGNLVKNTLEKCQRENGFIYFQKIPTEPQLELKANYGLVEPIPFEPTSVQWTPETLADLTKRPKDDSTKPKPEEEVKPVKEPDIKPQKDTGCYIS................................................................................................................................................................................................................................................................................................................ 411
6 -82.0003zxp_A mol:protein length:407 BRO1 DOMAIN-CONTAINING PROTEIN BROX  ali model follow..  19  1GIDPFTMTHWFHRNPLKATAPVSF-----NYYGVVTG---PSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSLDESTQESKLRFKWTDTLQ------GQVPSAQQDAVFELISMGFNVALWYTKYASGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGEFRKLGNLVKNTLEKCQRENGFIYFQKIPTEPQLELKANYGLVEPIPFEPTSVQWTPETLAAFDLTKRPKDDSTKPKPEEEVVKEPDIK.......................................................................................................................................................................................................................................................................................................................... 407
7 -80.7002ojq_A mol:protein length:348 Programmed cell death 6-interacting protein  ali model follow..  98  2..........................................................................................................................................................................................................................................................................................................................................................................AMGSPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 344
8 -78.4004jjy_A mol:protein length:360 Programmed cell death 6-interacting protein  ali model follow..  98  2.....................................................................................................................................................................................................................................................................................................................................................................DPFTFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 349
9 -62.9004jio_A mol:protein length:344 BRO1  ali model follow..  15  1............................................................................................................................................................................................................................................................................................................................................................................IDPFTIYEKESIYSEEKAQLLRKEMESVETADLEYTSFVEFTNLPKLINDLAAATTGGNNNDADPQLE------------MMRDQIKSWAYAVQQNEFNDIERIINVISSKRKEILDILATLPA-----EEKENILKLKASLVEASQSDEKLFRLIKPYVAEIKLLCNDSSLWRKFDEFQSASKTELILSKLKAITQFAEDLRLLKEERARTMGELKDYNNDDITSLLLANKDKSDAELQSLFESELAK-FEPLTTRIEATIFKQGSTINGVKIELDNIFGTPEEQKAELERKLFFDKLEEATTKFTIFSSDIQKGLNFYNSLLKMSKDLQNSVEQNPS.. 344
10 -11.4004qn1_A mol:protein length:420 E3 ubiquitin-protein ligase SHPRH  ali model follow..  4.............................................................................................................................................................................................................................................................................................................................................................................................EELLTSLQKKCGECEEAHRQLVCALNGLAGIHIIKGEALAAELYREVLRSSEEHKGKLKTDSLQRLHAT--HNLMELLIARHPGIPPTLRDGRLEEE--KQLREHYMSKCNTEVAEAQQALYPVQQTIHELQRKIHSNSPWWLNVIHRAIEFTIDTSNYKQQTGKLSMSEKFRDCRGLQFLLTQMEELNKCQKLVREAVKNLEGPPSRNVIESATRPARLPLNCCVFCKADELFTEYESKLGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALR 348
11 -9.1405cws_D mol:protein length:227 Nucleoporin NUP49  ali model follow..  10  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MSEALQQEIAKIDEEIQKCIRDKEAVDAFLPAHGEQLAAIPTDVNFVTRKSEGAHNALS-SDILAIDQLRELVKQDADNARLSFKAIDNLKLPMQYHQAGLWSKQMGGASADADGQSNADLISYFSKTADEMEEMMKKFEKTITEIEAHLTGV-EAHAMAMQNVAAQSRNAAQGGVDERVYELAAVLREFEESILKVAGVVGGVKEGVTELQLRD 221

FFAS is supported by the NIH grant R01-GM087218-01
8 5 9 5 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.