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Query: 2nrj_A mol:protein length:346 Hbl B protein, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SLSEIEQTNNGDTALSANEARMKETLQKAGLFAKSMNAYSYMLIKNPDVNFEGITINGYVDLPGRIVQDQKNARAHAVTWDTKVKKQLLDTLNGIVEYDTTFDNYYETMVEAINTGDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAVTLKEGIKELKVETVTPQKLast
1 -63.6002nrj_A mol:protein length:346 Hbl B protein  ali model  100  1SLSEIEQTNNGDTALSANEARMKETLQKAGLFAKSMNAYSYMLIKNPDVNFEGITINGYVDLPGRIVQDQKNARAHAVTWDTKVKKQLLDTLNGIVEYDTTFDNYYETMVEAINTGDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAVTLKEGIKELKVETVTPQK 346
2 -43.1004k1p_A mol:protein length:360 NheA  ali model follow..  12  1.KEGQTEVKTVYAQNVIAPNTLSNSIRMLGSQSPLIQAYGLVILQQPDIKVNAM---------SSLTNHQKFAKANVREWIDEYNPKLIDLNQEMMRYSIRFNSYYSKLYELAGNQSKADFTNAYGKLQLQVQSIQENMEQDLLELNRFKTVLDKDSNNLSIKADEAIKTLQGSSGDIVKLREDIKRIQGEIQAELTTILNRPQEIIKGSINIVNAADSQTREAALRIQQKQKELLPLIQKLSQTEAEATQITFVEDQVSSFTELIDRQITTLETLLTDWKVLNNNMIQIQKNVEEGTYTDS----SLLQKHFNQIKKVSDEMNKQTNQFEDYVTNVEVH...... 360
3 -15.4002bsg_A mol:protein length:487 FIBRITIN  ali model follow..  50.................................................................................VSVLRNVEVLDKNIGILKTSLETAIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGN------------------PSSGMKHRIINNTDVITSQGIRLSELETKFIEVGSLTIEVGNLREELGPKPPSFQNVYSRLNEIDTKQTTVESDISAIKTSIGYPGNNSIITSVNTNTDNIASINLELNQSGGIKQRLT........ 294
4 -14.6004lin_A mol:protein length:300 Tail needle protein gp26  ali model follow..  19.................................................................................NPVVIQATRLDASILPRNVFSKSYLLYVIAQ--GTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIK----QLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSA----------------DGRVTTAENNISALQADVDDHESRITANT---KAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQVSDTYTQSEIQAIANALITERRRTKALEDALRA.......... 295
5 -14.3004zkp_A mol:protein length:237 Tail needle protein gp26  ali model follow..  4..............................................................................................................SMADPSLNNPVVIQATRLDASILPRNVFSKSYLLYVIAQGTDVAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVD-----------------------------DHESRITANTKAITALNVRVTTAE---GEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLNVTTSYSAVSDTYTQSEIQAIANALITERRRTKAMEDALRA.......... 232
6 -14.1001c1g_A mol:protein length:284 TROPOMYOSIN  ali model follow..  11  1................................................................................MDAIKKKMQMLKLDKENALDRADEAEADKKAA--EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE----------------ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 265
7 -14.0002tma_A mol:protein length:284 TROPOMYOSIN  ali model follow..  10  1................................................................................MDAIKKKMQMLKLDKENALDRAEQAEADKKAA--EDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESER---------------GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 265
8 -13.9003c9i_A mol:protein length:242 Tail needle protein gp26  ali model follow..  11................................................................................................................ADPSLNNPVVIQATRLDASILPRNVFSKSYLLYVIAQGTDVAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVD-----------------------------DHESRITANTKAITALNVRVTTAE---GEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLNVTTSYSAVSDTYTQSEIQAIANALITERRRTKAMEDALRA.......... 237
9 -13.7004gkw_A mol:protein length:167 Spindle assembly abnormal protein 6  ali model follow..  12  3..................................................................................................................HMLVEDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLR----EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL----------------------KRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQRFS........................................... 165
10 -13.6002v71_A mol:protein length:189 NUCLEAR DISTRIBUTION PROTEIN NUDE-LIKE 1  ali model follow..  12  2..................................................................................................................AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA-------------------------QSYKQVSVLEDDLSQTRAIKEQLHKY---VRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKES---------LLVSVQRLKDEARDLRQELAVRERQQEVTR........ 188
11 -13.3005bu5_A mol:protein length:233 DNA stabilization protein  ali model follow..  11  4.............................................................................................................................SNLNEPVIIQATRLDTSILPRNIFSQSYLLYVIAQGTDVGNVANKANEAGQGAYDAQVKNDEQDVELADHDARIAA----------------TKAINILEVRLTTAEGKIVVLRSDVDYLL---DEVIDIQAHLVTVDQRLDGVESDVSDIKSDYVSKTVTESQSLASPLDVKTSYSTVGTTYTQSEVAALATGLEQARQRILALETALRL.......... 228
12 -12.9004ll8_E mol:protein length:235 SWI5-dependent HO expression protein 3  ali model follow..  14  2..................................................................................................................EHMESKLLENLNLLKNENENLNSIFERKNKKLKELEKDYSERYNEQKEKMDQLSKLAKNSSAIEQSCSEKLQNMEVNYNSLLESQNL------------------YRDHYSDEISKLNEKIGLLELELSNQNLN---YGSDTSSNSDIELNLNKFNDSVKDLKSLETEKDSKLSKIITHSLDELNLQSWLNLYQTNENLISTFAEKMDLKDVLKRNDEKISNKGAVVQTLKK 215
13 -12.8004uxv_A mol:protein length:545 SEPTATION RING FORMATION REGULATOR EZRA  ali model follow..  66.EELLYDAEENADKYRFKKVHIDDLLTAAESSIEKILREISDLVTSEEKSREEI---------EQVRERYSKSRKN----LLAYSHLYGELYDSLEKDLDEIWSGIKQFEEETEGGNYITARKVLLEQDRNLERLQSYIDDVPKLLADCKQTVPGQIAKLKDGYGEMKEDIDEASAILQLIDENIQSVYQQLEGEVEAGQSVLSKM------------IAYDKLKEEKEHTKAETELVKESYRLTAGELGKQQAFEKRLDEIGKLLSSVKDKLDAEHVAYSLLVEEVASIEKQIEEVKKEHAE-----YRENLQALRKEELQARETLSNLKKTISETARL...... 415
14 -12.6001qoy_A mol:protein length:318 HEMOLYSIN E  ali model follow..  26...................EVVKNAIETADGALDLYNKYLDQVIPWQTFD----------ETIKELSRFKQEYSQAASVLVGDIKTLLMDSTQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAGAAAGVVVGP----------------GLIISYSIAAGVVEGKLIPELKNKLKSVQ---NFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETETTRFYVDYDDL------------MLSLLKEAAKKMINTCNEYQK.............. 305
15 -12.6005cws_D mol:protein length:227 Nucleoporin NUP49  ali model follow..  12  3......................................................................................................................EALQQEIAKIDEEIQKCIRDKEAVDAFLPAHGAAIPTDVNFVTRKSEGAHNALSSDILAIDQLRELVKQDADNARLSFKAIDN-----------LKLPMQYHQAGLWSKQMGGAGTAGASGASADADGQSNADLSYFSKTADEMEEMMKKFEKTITEIEAHLTGVEAHAMAMQNVAAQSRNAAQDERVYELAAVLREFEESILKVAGVVGGVKEGVTELQLR...... 220
16 -12.6004e40_A mol:protein length:252 Putative uncharacterized protein  ali model follow..  11  5.................................................................................IKVELEDSDDVAAACELRAQLAGVSIASGILLRP--AVIRNATTEFSRKKSEDILAKGGAAVERASAAVDRVSG-LDKTNETAQKVRKAAAVAHHALEHVKEEVEIVAKKVNEIIELTAGATEHA-----------KGAKANGDASAVKVSNLLARAKESENQYVKEAAEECSESTNYDVTAKSLAAALDKLPGVKED-NAVKTTFQSILTSLDNLDKDVKSQRAEELETALEKAERQLEKAEKAAEEAETESSKVETESS.... 252
17 -12.1001nyh_A mol:protein length:166 Regulatory protein SIR4  ali model follow..  2...........................................................................................................PLGSKRVPIVEDRRVKQLDDITDSNTTEILTSVDVLGTHSQTGTQQSNMYTSTQKTELEIDNKDSVTECSKDMKEDGLSFVDIVLSKAASAL----------------------DEKEKQLAVANEIIRSLSDEVMRNEIR---ITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQVNKEIK................................................... 164
18 -11.9004ilo_A mol:protein length:257 CT398  ali model follow..  3.......................................................................................................................AMHDALQSILA------QELDIKMIRLMRVKKEHQNELAKIQALKTDIRRKVEEKEQEMEKLKDQIKGGEKRIQEISDQINKLENQQ-------------AAVKKMDEFNALTQEMTAANKERRTLEHQ---LSDLMDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEGRSLLSQRTQLKETTDPELFSVYERLLNNKK.................. 190
19 -11.8004cgk_A mol:protein length:392 SECRETED 45 KDA PROTEIN  ali model follow..  12  24..................................................................................................................TAHAETTDDKIAAQDNKISNLTAQQQEAQKQVDQIQEQVS----AIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTN-----VTSYINTIVNSKSITEAISRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAAELSLAAEK-ATAEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQ 247
20 -11.8004m0m_A mol:protein length:756 Putative uncharacterized protein  ali model follow..  358SFNWFFEKNHGGQTKKEEVIVELKSLSEDPRYEHFFSSLAKHFQINENNIAGTLPEPSGIDRDEKSSFGQPPVRDRLSYLQHSLTSIANYYHYHCDEKSSTNESVKNLLLERVKESRTKPDSEAIKHLEQTMDESKNEKGFLWQQINHISPNARQYCEQVK---AALREHLEHNQVLSDTQKEEIRKAMDRMDNIVNDSSKDSQQKYREIRREVIELNAKATTPEDDNQLTRSHFQKAYFELSGDTQKTLNLESLSQTLNQLTDKITQRLDGYKNRNWFWNSVKEVLNFFNIPLPKLHSEVKEQIADKLKERLVDLKEK-NDVNAITRELGKAREDLIEHYKKTSK 718
21 -11.8005cws_C mol:protein length:208 Nucleoporin NSP1  ali model follow..  1........................................................................................................................MDEIITRWATDLAKYQKEFKEQAAKVMEWDRKLYTSTYEAERASNEIERQLSNVESQQEELTAWLDRYERELDELYAKQMGSAAGEQAAGP-------KLAEKLTDQLDEMGKDLAKMIKEINDMSNTLSKGSKPDDPLTQIVRVLNGHLAQLQWIDTNAAALQAKVAAAQKAAGSMGANVP............................................ 193
22 -11.7002b9c_A mol:protein length:147 striated-muscle alpha tropomyosin  ali model follow..  1........................................................................................................................MNRRIQLVEEELDRAQERLATALQKLEEAEKAAD----ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR----------------------KYEEVARKLVIIESDLERAEERAELSEGKCAELE---EELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGE.................................................. 147
23 -11.6002efr_A mol:protein length:155 General control protein GCN4 and Tropomyosin  ali model follow..  11  3........................................................................................................................................KQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEA----------------------QAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAEKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK......................................... 153
24 -11.5001quu_A mol:protein length:250 HUMAN SKELETAL MUSCLE ALPHA-ACTININ 2  ali model follow..  20..................................................................................................................RQKASTHETWAYGKEQILLQKDTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL--------ERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSN-PYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANER 250
25 -11.5003na7_A mol:protein length:256 HP0958  ali model follow..  11  12....................................................................................................................EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAIL----NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS---------------------------ERELRSLNIEEDIAKERSNQANRE---IENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAK.................. 189
26 -11.5004hpq_C mol:protein length:413 Atg17  ali model follow..  10  27SNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSE----ILLREGIGRNLIEEEWSQTVLVRLVNDMKFWQNEITKMMNKLDHILDSKLNEIPTIRKQVENITRQYQTMLAKDQCRENLKLNEEFTNEADQLEQELADFLKSFTDHFDKCSASRSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNM------------------LLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAK-----LSQILKSCETQLEQINTADLRERQMFLLENGNYLPET. 391
27 -11.2003u0c_A mol:protein length:201 Invasin ipaB  ali model follow..  13  59..........................................................................................................GNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQ----INKLKNADSKIKDLENKINQIQTRLSE-----------------------------LDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEK....................................................................... 194
28 -11.1004ux3_A mol:protein length:543 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN  ali model follow..  173..................................................................AKSFEVKLKASLKKMEETEQKKIQINKEMGELNSKLSEMEQELERNRKIYQFTLYDRELNEVINQMERLDGDYNNTVYSSESSKHPTSLVPRGSDITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERR----------------------KDLAERASELDESKDSIQDLIVKLKQ--QKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAESNE--SQNGKDSEIMYTGVSISVSFNSKQNEQLHVEQLSGGQ 435
29 -11.0002h7o_A mol:protein length:303 Protein kinase ypkA  ali model follow..  13..................................................................................................................PKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYRVIEDYVKGREGDTKNSSTEV----------------------SPYHRSNFMLSIVEPSLQRIQKHLDQTHSSLVRAHKHLETLLEVLVTLSQQGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQ-ESAKAQLSILINRSGSWADVARQSLQRFDSTRPV...... 220
30 -10.9004pxt_A mol:protein length:211 Bipolar kinesin KRP-130  ali model follow..  1...................................................................................MQQQQLLMSKEIQTNLQVIEENNQRHKAMLDSMQ-EKFATIIDSSLQSVEEHAKQMHKKLEQLGAMSLPDAEELQNLQEELANERALAQQEDALLESMMMQMEQIKNLRSKNSISMSV------------------HLNKMEESRLTRNHRIDDIKSGIQDYQKLGIEAAELTSQMEAGMLCLDQGVANCSMLQVHMKNLNQKYEKETNENVGSVR............................................... 202
31 -10.8003nwh_A mol:protein length:112 Bone marrow stromal antigen 2  ali model follow..  11  24..................................................................................................................RNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD................................................................................................................................................. 110
32 -10.8005cwb_A mol:protein length:211 Designed helical repeat protein  ali model follow..  15..................................................................................................................AEKVERLKRSGTSEDEIAEEVAREISEVIRTLKESGSSYEVICECVARIVAEIVEALKRSGTSEDEIAEIVARVISEVIRTLKESGSSYEVICECVARIVAEIVEALKRSGTSEDEIAEIVARVISEVIRTLKESSSYEVIKECVQRIVEEIVEALKRSGTSEDEINEIVRRVKSEVERTLKESGSS............................................. 202
33 -10.7003ter_A mol:protein length:136 Mammalian stromal interaction molecule-1  ali model follow..  12  3................................................................................................................VNHTEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAA-------------------STSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL........................................................................................... 126
34 -10.7003iox_A mol:protein length:497 AgI/II  ali model follow..  1................................................................................................................................AANEADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADL------------------AKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTS........................................... 157
35 -10.6003mq7_A mol:protein length:121 Bone marrow stromal antigen 2  ali model follow..  10  17..................................................................................................................LRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE.................................................................................................................................................... 100
36 -10.6002qih_A mol:protein length:157 protein UspA1  ali model follow..  1............................................................................................................................MRGSGSATSANTDRIATAELGIAENKKDAQIAKAQANENKDGIQADIQLHDKKITNLGILHSMVARAVGNNTQGVATN----------------------KADIAKNQADIANNIKNIYELA---QQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQKLCSQA................................................. 151
37 -10.5003o0z_A mol:protein length:168 Rho-associated protein kinase 1  ali model follow..  10  5..................................................................................................................NEKLSQLQKQLEEANDLLRTESDTAV----RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR----------------------DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEDLNYKLKSLQQRLEQEVNEHKVTKARLTD........................................... 168
38 -10.4002yfa_A mol:protein length:258 METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER  ali model follow..  19...............................................................GQLNKDLTDLRIARLQYMIA-DTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLALISKARQQLLQVRIDVRGY-----------------IAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLERRDIES........................................ 252
39 -10.4003dyj_A mol:protein length:332 TALIN-1  ali model follow..  10  63...............................................................KVLVEDTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLGAASLGA--DPETQVVLINAVKDVAKALGDLISATKAAAGKVGD-VWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEHIRQELAVFCSPEPPAKTSTPEDFIRMTKGITMATAKA--AAGNSCRQEDVIATANLSRRAIADMLRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQAAEAMKGT............. 332
40 -10.4002d3e_A mol:protein length:134 General control protein GCN4 and Tropomyosin  ali model follow..  12  1..........................................................................................................................................MEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKCAELEEELKTVTNNLKSLEA----------------------QAEKYSQKEDKYEEEIKVLSDKLKEAETR---AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS.................................................. 133
41 -10.4002xg7_A mol:protein length:103 BONE MARROW STROMAL ANTIGEN 2  ali model follow..  10  8...................................................................................................................RAVMECRNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV................................................................................................................................................. 93
42 -10.2003edu_A mol:protein length:218 Spectrin beta chain, erythrocyte  ali model follow..  1............................................................................................GSLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATI---AEWKDGLNEMWADLLELIDTRMQLLAASY-----------------------DLHRYFYTGAEILGLIDEKHRE------LPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDT......... 213
43 -10.2003mqb_A mol:protein length:121 Bone marrow stromal antigen 2  ali model follow..  10  17..................................................................................................................LRAVMECRNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE.................................................................................................................................................... 100
44 -10.2002odu_A mol:protein length:235 Plectin 1  ali model follow..  5......................................................................................RANELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVP-PGYHPLDVEKEWGKLHVAILEREKQLRSEFE---------------RLECLQRIVTKLQMEAGLCEEQLNQADALLQS--------DVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDG-RHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAAPATQV.... 235
45 -10.2001hci_A mol:protein length:476 ALPHA-ACTININ 2  ali model follow..  10  156QKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVN-----DRCQKICDQWDRLGTLTQKRREAL-ERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLV-------------------------PIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSTGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIDNKHTNYTMEHIRVGWELLLTTIARTINEVET.......... 470
46 -10.2003f57_A mol:protein length:225 Spectrin beta chain, erythrocyte  ali model follow..  1.....................................................................................SNALENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASY--------------------------DLHRYFYTGAEILGLIDEKHRE------LPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDT......... 220
47 -10.1003kbt_A mol:protein length:326 Spectrin beta chain, erythrocyte  ali model follow..  28ISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQII-----RLQGQVDKHYAGLKDVAEERKRKLENMY-----HLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDEAATIAEWKDGLNEMWADLLELIDTRMQLLAA------------------------------SYDLHRYFYTGAEILGLIDEKHRE------LPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDT......... 322
48 -10.1003ibp_A mol:protein length:302 Chromosome partition protein mukB  ali model follow..  1............................................................................GSHMIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVLAAQNSLNQLSEQCGEEFTSSQ----DVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARES-RIESLHAEREVLSERFATLSFDVQKTQRLHQAFS........ 258
49 -10.1005cws_E mol:protein length:247 Nucleoporin NUP57  ali model follow..  82................................................................................................................LQRRVITEFNNKLHQINASLDAILSDHTVRAFNARRRHAELSRRCLHLAARVQVLRNRGYALSGDEDELKQKLQQIDKTLND---------------------------PAQGSRLEELWSRLIVLRGYAEDLKDQINQAGITEEIEAKAKKILEDYDKQLQHLKKQVEEAKKDFEEWEKQHN................................................... 247
50 -10.0003g67_A mol:protein length:213 Methyl-accepting chemotaxis protein  ali model follow..  11  6..................................................................................................................KERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATI------AARAGEAGKGFMIVANEVQNLSNETNE------VTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQE-----VRNSLDTSKESLSEKSAEIDSATKVLEET......... 212
51 -9.9702pms_C mol:protein length:125 PNEUMOCOCCAL SURFACE PROTEIN A (PSPA)  ali model follow..  2....................................................................................................................................................................SHMDAEEVAPQAKIAELENQVHRLEQELKEIDESE-------------------SEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK........................................... 121
52 -9.9704xa6_A mol:protein length:175 Gp7-MYH7(1777-1855)-EB1 chimera protein  ali model follow..  12  2...................................................................................................................ASMPLKPEEHEDILNKLLDPELAQSERTEALQQLRGSFVSEYNDLTKSHAHLERMKKNMEQTIKDLQHRLDEAEQIALK----------------------------GGKKQLQKLEARVRELENELEAEQKRNAESV---KGMRKSERRIKELTYQTEDLEKERDFYFGKLRNIELICQENEGENDP-----VLQRIVDILYATDE........................ 175
53 -9.9701u4q_A mol:protein length:322 Spectrin alpha chain, brain  ali model follow..  11  27ASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVK-----DKRETINGRFQRIKSMAAA-----RRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKR-----------LEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL----------------EESLEYQQFVANVEEEEAWINEKMTLVAS-----EDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK-NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN......... 320
54 -9.9503tkl_B mol:protein length:267 LidA protein, substrate of the Dot/Icm system  ali model follow..  11  5.................................................................................................................STSSTSQADKEIQKMLDEYEQAIKRAQENIKKGE----ELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEEL-----------------------------------SLSEINEKMKAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAKGQWDAIKNDPAALEKAQKDYSQSKHDLATIKMEALIHKL 216
55 -9.6802iak_A mol:protein length:224 Bullous pemphigoid antigen 1, isoform 5  ali model follow..  12  24......................................................................................VNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRATNELIWLNEKEE--------------SEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE.................................................. 224
56 -9.6802wcd_A mol:protein length:309 HEMOLYSIN E, CHROMOSOMAL  ali model follow..  11...................EVVKNAIETADGALDLYNKYLDQVIPWQTFD----------ETIKELSRFKQEYSQAASVLVGDIKTLLMDSTQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRK-EAYAGAAAGVVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETETTRFYVDYDDLMLSLLKEAAKKMIN.................................................. 283
57 -9.6103edv_A mol:protein length:323 Spectrin beta chain, brain 1  ali model follow..  22...........................................IAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATI--------AEWKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR........... 322
58 -9.6003pdy_A mol:protein length:210 Plectin  ali model follow..  12  5.................................................................................................................................ELEDSTLRYLQDLLAWVEENQHRVDG--AEWGVDLPSVEAQLGSHR----GLHQSIEEFRAKIERARSDEGQ--------------LSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLARPTVESFQAALQTQWSWMLQLCCCIEAHLKE.......... 209
59 -9.4701jch_A mol:protein length:551 COLICIN E3  ali model follow..  327..................................................................................................................RAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAK---------------EKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPKTENIKG----LGDLKPGIPKTPKQNGGGKRKRWTGDKGRKIYEWDSQHGELEGYRASDGQHLGSFDPKTGNQLK 539
60 -9.4605cj0_A mol:protein length:207 Xrcc4-MYH7-(1631-1692) chimera protein  ali model follow..  10  49..................................................................................................................TVSESEISQEADDMAMEKGKYVGELRKALLSGDVYTFNFSKESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICY-----------------------------CLDTTAENQAKNEHANRMAAEAQKQVKSLQ---SLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV............................................. 207
61 -9.3501ruy_I mol:protein length:160 hemagglutinin  ali model follow..  12  32...........................................................................................................................................SGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNKLEKRIENLNNKVDDGF--------------------------------LDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVRSQLK-----------------NNAKEIGNGCFEFYHKCDNECMESVRNGT................................. 156
62 -9.3404fzs_A mol:protein length:224 Sorting nexin-1  ali model follow..  12  12......................................................................................................................EEKLQEVECEEQRLRKLHAVVETLVNH----RKELALNTAQFAKSLAMLGSS--EDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP-----DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVQQLAKYWEAFLPEAKAIS............... 224
63 -9.3301x79_B mol:protein length:112 Rab GTPase binding effector protein 1  ali model follow..  5..................................................................................................................RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQV................................................................................................................................................... 89
64 -9.2804wjg_E mol:protein length:343 Haptoglobin-hemoglobin receptor  ali model follow..  59..................................................................................................................VEALTRVDVALQRLKELGKANDTKAVKIIENITSARENLALETQAVLTARDHVHKHRAAALQGWSDAKEKGDAAAEDVWVLLNAAKKGNGSADVKAAAEKCSRYSSSSTSETELQKAIDAAANVGGKYGDVLNKFKLSNASVGAVRDTSGRGGKHMEKVNNVAKLLKDAEVSLAAAAAEIEEVKNAHETKAQEEMKRETNSGGNAESQGNGDREDKNDEQQQVDEE...... 302
65 -9.2701ei3_A mol:protein length:491 FIBRINOGEN  ali model follow..  10  51...........................................................................................................RMQGIIDDTD-QNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKA-----------------------------LQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASSIDMHPDFQTTTLSTKMRPLKDSNVPEHFKLKPSPEMQAMSAFNNIKQMQVVLERPETDHVAEARGDSS 260
66 -9.2501cun_A mol:protein length:213 PROTEIN (ALPHA SPECTRIN)  ali model follow..  10  1.................................................................MVHQFFRDMDDEESWIKEKKLLVSSYGRDLTGVQNLRKKH-------------KRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEEFVANVEEEEAWINEKMTLVAS-----------------EDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAMKGLKGKVSDLEKAAAQRKAKLDEN................................................. 211
67 -9.2203tul_A mol:protein length:158 Cell invasion protein sipB  ali model follow..  16  19.......................................................................................................................................DVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTEAQEATDLYEASIKKTDTAKSVYDA-----------------------------ATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTANAA............................................. 158
68 -9.2001yvl_A mol:protein length:683 Signal transducer and activator of transcript  ali model follow..  40......................KQDWEHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQLKKMYLMLDNKRKEVVHKIIELLNVTE-----------------LTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKT............. 337
69 -9.1902e7s_A mol:protein length:135 Rab guanine nucleotide exchange factor SEC2  ali model follow..  11  3............................................................................................................................LGSLEEQLNKSLKTIASQKAAIENYNNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNL--------------VADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVMHS................................................................................. 135
70 -9.1304pho_A mol:protein length:302 Hemolysin E, chromosomal  ali model follow..  10...................EVVKNAIETADGALDLYNKYLDQVIPWQTFD----------ETIKELSRFKQEYSQAASVLVGDIKTLLMDATQTVYEWAGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRK---------EAYAGAAAGVVAGPFGLIISYSIAAGVVEGKLIPELKN----------------KLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETETTRF------CDYDDLMLSLLKEAAKKMINTANEYQK.............. 289
71 -9.1104q4g_X mol:protein length:472 Peptidoglycan endopeptidase RipA  ali model follow..  44..........................................................................................................................DTIAALIADVAKANQRLQDLSDEVQAEQESVNKAMVDV----ETARDNAAAAEDDLEVSQRAVKDANAAIAAAQHRFDTFAAATYMNGPSVSYLSASSPDEIIATVTAAKTLSASSQAVMANLQRARTERVNTESAARLAKQKADKAAADAKASQ---DAAVAALTETRRKFDEQREEVQR........................................... 217
72 -9.0803plt_A mol:protein length:234 Sphingolipid long chain base-responsive prote  ali model follow..  11............................................................................................................................KNAAGNFGPELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKY----------------------DQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYK----DPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDDSPVTP..... 201
73 -9.0704n3y_B mol:protein length:92 Rab GTPase-binding effector protein 1  ali model follow..  10  2.......................................................................................................................ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS................................................................................................................................................ 84
74 -9.0703qwe_A mol:protein length:279 GEM-interacting protein  ali model follow..  16..............................................................VDAALEYAKTWSRYAKELLAWTEKRAS------LEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEHMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSA-------------PQASPGPSKQQERRRRSREEAQAKAQEAE-------------ALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGDEVLRRVTLSLFGLRGAQAERGPRAFAALAECCAPF................ 261
75 -9.0303i00_A mol:protein length:120 Huntingtin-interacting protein 1  ali model follow..  14  9....................................................................................................................NKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ---------------------------------REDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELVQ..................................................................................... 120

FFAS is supported by the NIH grant R01-GM087218-01
8 3 0 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.