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2nrjA
Query: 2nrj_A mol:protein length:346 Hbl B protein, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SLSEIEQTNNGDTALSANEARMKETLQKAGLFAKSMNAYSYMLIKNPDVNFEGITINGYVDLPGRIVQDQKNARAHAVTWDTKVKKQLLDTLNGIVEYDTTFDNYYETMVEAINTGDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAVTLKEGIKELKVETVTPQKLast
1 -64.0002nrj_A mol:protein length:346 Hbl B protein  ali model  100  1SLSEIEQTNNGDTALSANEARMKETLQKAGLFAKSMNAYSYMLIKNPDVNFEGITINGYVDLPGRIVQDQKNARAHAVTWDTKVKKQLLDTLNGIVEYDTTFDNYYETMVEAINTGDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAVTLKEGIKELKVETVTPQK 346
2 -16.1003c9i_A mol:protein length:242 Tail needle protein gp26  ali model follow..  11................................................................................................................ADPSLNNPVVIQATRLDASILPRNVFSKSYLLYVIAQGTDVAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITA----------------TKAITALNVRVTTAEGEIASLQTNVSALD---GRVTTAENNISALQADYVSKTATTSQSLASPLNVTTSYSVGGKKVVGARQTGWFDADLTFAVSDTYTQSEIQAIANALITERRRTKAMEDA...... 234
3 -15.9002bsg_A mol:protein length:487 FIBRITIN  ali model follow..  60.DKNIGILKTSLETANSDIKTIQGILDVSGDIEALAQI-------KKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDIN-----GLPVVGNPSSGMKHRIINNTDVITSQGIRLSELETKFIEDVGSLTIEVGNLREELQNVYSRLNEIDTKQTTVESDISAIKTSIGY-----------------PGNNSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSIKGQIKDNTTSIESLNGI-SGLRANVSWLNQIVGTDSSGGQPSPPGSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAG...... 392
4 -14.9001c1g_A mol:protein length:284 TROPOMYOSIN  ali model follow..  11  1................................................................................MDAIKKKMQMLKLDKENALDRADEAEADKKAA--EDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE----------------ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS...... 252
5 -14.8002tma_A mol:protein length:284 TROPOMYOSIN  ali model follow..  10  1................................................................................MDAIKKKMQMLKLDKENALDRAEQAEADKKAA--EDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADE----------------ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS...... 252
6 -14.6002v71_A mol:protein length:189 NUCLEAR DISTRIBUTION PROTEIN NUDE-LIKE 1  ali model follow..  10  9..................................................................................................................KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT-----------RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQEVTR......................................... 188
7 -14.5001jch_A mol:protein length:551 COLICIN E3  ali model follow..  278........................................................SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQA--NEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAK----------------------EKSDADAALSSAMESRKKKEDKKRSAEN---NLNDEKNKPRKGFKDYGHDYHPAPKTENIKGLGDLKPGIPKTPKQNGGGKRKRGDKGRKIYEWDSQHGELEGYRASDGQHLGSFDPKTGNQLKGPD 542
8 -14.4001qoy_A mol:protein length:318 HEMOLYSIN E  ali model follow..  17..........AEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFD---ETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAGAAAGVVVGP----------------GLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLS---NTVKQANKDIDAAKLKLTTEIAAIGEIKTETETTRFYVDYD------------DLMLSLLKEAAKKMINTCNEYQK.............. 305
9 -14.0002oev_A mol:protein length:705 Programmed cell death 6-interacting protein  ali model follow..  378NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP---SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREG------------------LENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR..... 705
10 -13.8002qih_A mol:protein length:157 protein UspA1  ali model follow..  1............................................................................................................................MRGSGSATSANTDRIATAELGIAENKKDAQIAKAQANENKDGIAKDIQLHDKKITNLGILHSMVARAVGNNTQ----------------------GVATNKADIAKNQADIANNIKNIYELAQ---QQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQKLCSQA................................................. 151
11 -13.5003u0c_A mol:protein length:201 Invasin ipaB  ali model follow..  10  3..............................................................................................................QAANDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQ----------------------KNLEFSDKINTLLSETEGLTRDYEKQIN---KLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKD-----RTLIEQKTLSIHSKLTDKSMQLEKEIDSFSA....... 201
12 -12.9003na7_A mol:protein length:256 HP0958  ali model follow..  10  12....................................................................................................................EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAIL----NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS---------------------------ERELRSLNIEEDIAKERSNQANR---EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR..................... 186
13 -12.8002b9c_A mol:protein length:147 striated-muscle alpha tropomyosin  ali model follow..  1........................................................................................................................MNRRIQLVEEELDRAQERLATALQKLEEAEKAAD----ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR----------------------KYEEVARKLVIIESDLERAEERAELSEGKCAELE---EELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGE.................................................. 147
14 -12.5002ojq_A mol:protein length:348 Programmed cell death 6-interacting protein  ali model follow..  17NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQ---RTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSLLSNLDEVKKEREG--------------------NDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER. 348
15 -12.2001cii_A mol:protein length:602 COLICIN IA  ali model follow..  70.ENKRTEAGKRLSAAIAAREKDENTLKTLRAG--NADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKA--ADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQ 412
16 -12.2001ei3_A mol:protein length:491 FIBRINOGEN  ali model follow..  51...........................................................................................................RMQGIIDDTD-QNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQN----------------------SIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQ----ASSIDMHPDFQTTTLSTLKMRPLKDSNVPEHFKLKP--SPEMQAMSAFNNIKQMQVVLERPETDHVAEARGDSS 260
17 -12.2001u4q_A mol:protein length:322 Spectrin alpha chain, brain  ali model follow..  11  51......................................................DISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRFRDMDDEESWIKEKKLLVSSEDTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL----------------EESLEYQQFVANVEEEEAWINEKMTLVA-----SEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK-NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN......... 320
18 -12.1003fhn_A mol:protein length:706 Protein transport protein TIP20  ali model follow..  2...........................................................................................................AMGSMNGIDDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVAL---------------SEVIAQDIIEVGASVEGLEQLRAKYGDLQI------------------NKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFDDVKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQKLLEAQWDTQKFASTSVGLVKCLRE...... 204
19 -12.1003mqb_A mol:protein length:121 Bone marrow stromal antigen 2  ali model follow..  10  17..................................................................................................................LRAVMECRNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV................................................................................................................................................. 103
20 -12.1001y1u_A mol:protein length:585 Signal transducer and activator of transcript  ali model follow..  1..........................................................................SPAGVLVDAMSQKHLQINQRFEELRLITQDT---------ENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTK-----FAATVRLLVGGKLNVHMNPPQVKATIISEQQAKSLLKN 258
21 -12.1001quu_A mol:protein length:250 HUMAN SKELETAL MUSCLE ALPHA-ACTININ 2  ali model follow..  7.....................................................................................RRLERLEHLAEKFRQKASTHETWAYGKEQITEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQ----------------------LHLEFAKRAAPFNNWMEGAMEDLQDMFHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPY--------STVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANER 250
22 -12.0003iox_A mol:protein length:497 AgI/II  ali model follow..  1..................................................................................................................AANEADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQ--------------------------------KDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKA......................................... 159
23 -12.0003mq7_A mol:protein length:121 Bone marrow stromal antigen 2  ali model follow..  10  17..................................................................................................................LRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV................................................................................................................................................. 103
24 -12.0001bf5_A mol:protein length:575 SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPT  ali model follow..  2...................................................................................................................DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTY---EHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVK.............. 215
25 -12.0002odu_A mol:protein length:235 Plectin 1  ali model follow..  5......................................................................................RANELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVP-PGYHPLDVEKEWGKLHVAILEREK----------------------QLRSEFERLECLQRIVTKLQMEAGLCEEQLNQADALLQSDVRL-LAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDG-RHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAAPATQV.... 235
26 -11.9002efr_A mol:protein length:155 General control protein GCN4 and Tropomyosin  ali model follow..  11  1...........................................................................................................................RMKQLEDKVEELLSKNYHLENEVARLKKLLE----RAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQ----------------------KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKL---EKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR........................................... 151
27 -11.9003kbt_A mol:protein length:326 Spectrin beta chain, erythrocyte  ali model follow..  52......................................................AVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHKRETDDLEQWISEKELVASSPEDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGSEAATIAEWKDGLNEMWADLLELIDTRMQLL----------------AASYDLHRYFYTGAEILGLIDEKHRE------LPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDT......... 322
28 -11.9002xg7_A mol:protein length:103 BONE MARROW STROMAL ANTIGEN 2  ali model follow..  11  14..................................................................................................................RNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKGT.............................................................................................................................................. 103
29 -11.8002oex_A mol:protein length:351 Programmed cell death 6-interacting protein  ali model follow..  20NQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQ---RTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREG--------------------NDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER. 351
30 -11.7003o0z_A mol:protein length:168 Rho-associated protein kinase 1  ali model follow..  10  2......................................................................................................................SLANEKLSQLQKQLEEANDLLRTESDTAVRLRKEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR----------------------DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV---EGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLTD....................................... 168
31 -11.7002ap3_A mol:protein length:199 conserved hypothetical protein  ali model follow..  14  17.................................................................................................................EIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDND------------RKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQDVDQFK......................................... 199
32 -11.6003edu_A mol:protein length:218 Spectrin beta chain, erythrocyte  ali model follow..  1............................................................................................GSLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYD-----------------------LHRYFYTGAEILGLIDEKHRELPE-------------DVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDT......... 213
33 -11.6001hci_A mol:protein length:476 ALPHA-ACTININ 2  ali model follow..  180......................................................DLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKL--LETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMF----EEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSTGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTR..... 475
34 -11.5003nwh_A mol:protein length:112 Bone marrow stromal antigen 2  ali model follow..  11  24..................................................................................................................RNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD................................................................................................................................................. 110
35 -11.4003f57_A mol:protein length:225 Spectrin beta chain, erythrocyte  ali model follow..  1.....................................................................................SNALENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYD-----------------------LHRYFYTGAEILGLIDEKHRELPE-------------DVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDT......... 220
36 -11.4002ysu_B mol:protein length:135 Colicin-E2  ali model follow..  8..................................................................................................................ERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQR-----------------------------AQTDVNNKQAAFDAAAKEKSDAD---AALSAAQERRKQKENKEKDAKDKLD........................................................................ 135
37 -11.3002d3e_A mol:protein length:134 General control protein GCN4 and Tropomyosin  ali model follow..  12  1..........................................................................................................................................MEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKCAELEEELKTVTNNLKSLEA----------------------QAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE---RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS.................................................. 133
38 -11.3003plt_A mol:protein length:234 Sphingolipid long chain base-responsive prote  ali model follow..  19.............................................................................................................................PELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKY-----------------------------DQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQ----STKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDDSPVTP..... 201
39 -11.3001mql_B mol:protein length:221 Hemagglutinin HA2 chain  ali model follow..  23..................................................................................................................................GFRHQNSEGTGQAADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTK-----------------------------------------------------IDLWSYNAELLVALENQHTIDLADSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIESIRNGTYDHDIYRDEALNNRFQIKGVELKSGYKDW 185
40 -11.0003dyj_A mol:protein length:332 TALIN-1  ali model follow..  42.................................................TLNREGAETFADHREGILKTAKVLVEDTKVLVQNAAGSQEKLAQAAQSSVATITRLADVVKLGA-----ASLGAEDPETQVVLINAVKDVAKALGDLISATKAAAGKVGD-DPAVWQLKNSAKVMVTNVTSLLKTVKAVEDEATKGTRALEATTEHIRQELAVFCSPEPPAKTSTPEDFIRMTKGITMATAKAATANLSRRAIADMLRACKEAAFHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQAAEAMKGT............. 332
41 -10.6003edv_A mol:protein length:323 Spectrin beta chain, brain 1  ali model follow..  22...........................................IAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAA----------AEWKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR........... 322
42 -10.6002oto_A mol:protein length:155 M protein  ali model follow..  13  20.................................................................................................................PAIQNIRLRHENKDLKARLENAMEVAGRDFKRAE----ELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEK--------------------------------ELEEKKEALELAIDQASRDYH---RATALEKELEEKKKALELAIDQASQDYNRANVLEKELE.......................................................... 155
43 -10.5001cun_A mol:protein length:213 PROTEIN (ALPHA SPECTRIN)  ali model follow..  13  6..................................................................................................................FRDMDDEESWIKEKKLLVSSEDTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL----------------EESLEYQQFVANVEEEEAWINEKMTLVA-----SEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK-NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN......... 211
44 -10.4002wcd_A mol:protein length:309 HEMOLYSIN E, CHROMOSOMAL  ali model follow..  33...................................................QVIPWQTFDETIKELSRFKQEYSQAASVLVGDIKTKYFEATQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAGA-AAGVVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKD---IDAAKLKLTTEIAAIGEIKTETETTRFYVDYDDLMLSLLKEAAKKMINT.............................................. 284
45 -10.3003ibp_A mol:protein length:302 Chromosome partition protein mukB  ali model follow..  1............................................................................GSHMIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVLAAQNSLNQLSEQCGEEFTSSQDVTEYLQ----QLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARES-RIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRF...... 260
46 -10.3002p22_A mol:protein length:174 Suppressor protein STP22 of temperature-sensi  ali model follow..  15..........................................................................................................QNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVD------------------------------EDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL.................................................... 173
47 -10.2001x79_B mol:protein length:112 Rab GTPase binding effector protein 1  ali model follow..  10  2......................................................................................................................AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ................................................................................................................................................. 84
48 -10.2002ocy_A mol:protein length:154 Rab guanine nucleotide exchange factor SEC2  ali model follow..  13  2....................................................................................................................................................................MALSTQLIESVDKQSHLEEQLNKSLKTIAS------------------------------------QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM-EILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDNES..... 152
49 -10.1003l4q_C mol:protein length:170 Phosphatidylinositol 3-kinase regulatory subu  ali model follow..  2..................................................................................................................QQDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQ----MKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGN-------------EKEMQRILLNSERLKSRIAEIHESRTKLEQELSDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINEWLG................................................... 169
50 -10.1001sjj_A mol:protein length:863 actinin  ali model follow..  10  285MQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQK-TLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDT--EEIQGLTTAHEQFKATLPDADKERQAILGIHNEVEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEM-HGTLEDQLNHLRQYEKSIVNYKPKIDQLEG....... 666
51 -10.1003cl3_D mol:protein length:130 NF-kappa-B essential modulator  ali model follow..  10  8..................................................................................................................LGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQV..................................................................................................................................................... 90
52 -10.0002fic_A mol:protein length:251 bridging integrator 1  ali model follow..  27................................................................................................NVQKKLTRAQEKVLQKLGKAD-ETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLV------------------------DQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFKEMSKLNQNLNDVLVGLEK.............. 251
53 -10.0004a3a_A mol:protein length:243 AMPHIPHYSIN  ali model follow..  13................................................................................................NVQKRLNRAQEKVLQKLGKADETK-DEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLV------------------------DGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSS-HKEIAVLCHKLYEVMTKLGDQHAD... 241
54 -10.0003i00_A mol:protein length:120 Huntingtin-interacting protein 1  ali model follow..  14  11......................................................................................................................DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ---------------------------------REDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELVQ..................................................................................... 120
55 -9.9202iak_A mol:protein length:224 Bullous pemphigoid antigen 1, isoform 5  ali model follow..  6.................................................................................................................................RKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDREWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRATNELIWLNEKEESEVAYNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE.......... 224
56 -9.8403pdy_A mol:protein length:210 Plectin  ali model follow..  1.............................................................................................................................GSHMELEDSTLRYLQDLLAWVEENQHRVDG--AEWGVDLPSVEAQLGS-----RGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEEEVGFDTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLRE-DHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKEN......... 210
57 -9.8103fb2_A mol:protein length:218 Spectrin alpha chain, brain spectrin  ali model follow..  3........................................................................................SHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLE-----------------------LQLFHRDCEQAENWMAAREAFLNTEDDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAA---------------GHYAKGDISSRRNEVLDRWRRLKAQMIEKR............... 212
58 -9.7102pms_C mol:protein length:125 PNEUMOCOCCAL SURFACE PROTEIN A (PSPA)  ali model follow..  2....................................................................................................................................................................SHMDAEEVAPQAKIAELENQVHRLEQELKEIDESESE-------------------DYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKAVNE....................................... 125
59 -9.6903n4x_A mol:protein length:190 Monopolin complex subunit CSM1  ali model follow..  13  2..........................................................................................................................DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEY................................................................................................................................................. 80
60 -9.6802qa7_A mol:protein length:114 Huntingtin-interacting protein 1  ali model follow..  12  4.............................................................................................................................DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE--------------------------LRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELVQ..................................................................................... 113
61 -9.6603tnf_B mol:protein length:384 LidA  ali model follow..  10..................................................................................................................IKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQRE-------------HDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEAT... 226
62 -9.4602xnx_M mol:protein length:146 M PROTEIN  ali model follow..  12  2..................................................................................................................VWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALE----LAIDQASQDYNRANVLEKELEAITREQEINRN----------------------LLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEK....................................................................... 136
63 -9.4401bg1_A mol:protein length:596 PROTEIN (TRANSCRIPTION FACTOR STAT3B)  ali model follow..  1..................................................................................................................GQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQQDLNGNNQSVTRQKMQQLEQMLTALDQMRRS----------------------IVSELAGLLSAMEYVQKTLTDEEKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQ-HRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTG 216
64 -9.4301s35_A mol:protein length:214 Spectrin beta chain, erythrocyte  ali model follow..  1...................................................................................MEQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVYLLLGQRLEGLDTGWDALGRMWESRSHTLAQFQKDAKQAEAILSNQEYTLAH-----------------LEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE............................................... 214
65 -9.4103ni0_A mol:protein length:99 Bone marrow stromal antigen 2  ali model follow..  14......................................................................................................................AECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQAQARIKELENEVTKLNQELENLRIQKETSSTVQVN................................................................................................................................................. 99
66 -9.3502fxm_A mol:protein length:129 Myosin heavy chain, cardiac muscle beta isofo  ali model follow..  9........................................................................................................................................AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE----------------------RCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL....................................................................... 125
67 -9.2802ykt_A mol:protein length:253 BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOC  ali model follow..  10  2...................................................STMSLSRSEEMHRLTENVYKTIMEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKE-------------QYIDAISNKQGELENYVSDGYKTTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQLMQQVASN.......................................... 253
68 -9.2702e7s_A mol:protein length:135 Rab guanine nucleotide exchange factor SEC2  ali model follow..  11  2....................................................................................................................PLGSLEEQLNKSLKTIASQKAAIENY-NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN--------------NLVADARMEKYAIEILNKRLTEQLREKDM---LLDTLTLQLKNLKKVMHS.............................................................................. 135
69 -9.2101yvl_A mol:protein length:683 Signal transducer and activator of transcript  ali model follow..  44.................................................................................EHAANDVSFATIRFHDLLSQLDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNALDQLQNWFTIVAESLQQVRQQLKKLEELEQK-----YTYEHDPITKNKQVLWDRTFSLFQQLIQSS........ 316
70 -9.1803mtt_A mol:protein length:187 Phosphatidylinositol 3-kinase regulatory subu  ali model follow..  1............................................................................................................................MIVKEDSVEAVGAQLKVYHQQYQDKSREYD----QLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKE------------------------------YLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQQLRAQASDNREIDKRMNSLKPDLMQLRKIRDQ-----YLVWLTQKGARQKKINEWLGIKNETEDQYALME..... 178
71 -9.1401ic2_A mol:protein length:81 TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE  ali model follow..  10  1............................................................................................................................MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELQKKLKGTEDELDKYSESLKDAQEKLELADKKATDC................................................................................................................................................ 81
72 -9.1102xhe_B mol:protein length:279 SYNTAXIN1  ali model follow..  51.................................................................................KRIRDNIEDIEQAI----EQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQDLRIRQSQHSSLSRKFVKVMTRYNDVQAENRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTL---VASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR......................................... 279
73 -9.0103r6n_A mol:protein length:450 Desmoplakin  ali model follow..  1................................................................................................................................SGWDEFTKHVTSECLGWMRQQRAEMDM--VAWGVDLASVEQHINS-----RGIHNSIGDYRWQLDKIKADLREK----------------SAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAA....... 200

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab

Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.