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2gt3A
Query: 2gt3_A mol:protein length:212 Methionine Sulfoxide Reductase A, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEALast
1 -129.0002gt3_A mol:protein length:212 Methionine Sulfoxide Reductase A  ali model  100  1MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA 212
2 -121.0002l90_A mol:protein length:212 Peptide methionine sulfoxide reductase  ali model follow..  56  3....SASKVISAEEALPGRTEPIPVTAKHHVSGNRTVPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHNFG-PITTDIREGQVFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPMAI 210
3 -119.0001fva_A mol:protein length:217 PEPTIDE METHIONINE SULFOXIDE REDUCTASE  ali model follow..  58  8RMGDSAAKIVSPQEALPGRKEPLVVAAKHHVNGNRTVPFPEGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFG-LITTDIREGQTFYYAEDYHQQYLSKDPDGYCGLGGTGVSCP... 216
4 -99.5002j89_A mol:protein length:261 METHIONINE SULFOXIDE REDUCTASE A  ali model follow..  42  51ISYYKPPMANILSKLGFGTRSPDPSTMDPTIPQGPDDLPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKL-----LNRKIVTEILPAKKFYRAEEYHQQYLAKGGRGFMQSAEKGCNDP... 256
5 -99.2003bqe_A mol:protein length:194 Peptide methionine sulfoxide reductase msrA/m  ali model follow..  40  2.........................................NTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQK-----YQLPLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHIDIRKADEP... 164
6 -97.0001nwa_A mol:protein length:203 Peptide methionine sulfoxide reductase msrA  ali model follow..  40  1.............................MGSSGHIERHMTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHG----THAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGL---WPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYCHFVRPGWRLPRRT 178
7 -95.8003pin_B mol:protein length:183 Peptide methionine sulfoxide reductase  ali model follow..  31  2.............................SLISKTIKYDPAKDKLITLASGSFWGTEHMYRKYDRIVDSKVGYANGEESKKSYKRVSGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPK-----WGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYA............. 174
8 -95.3003pim_A mol:protein length:187 Peptide methionine sulfoxide reductase  ali model follow..  31  3..........................HGSSLISKTIKYDPAKDKLITLACGCFWGTEHMYRKYDRIVDCKVGYANGEESKKSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPK-----WGNKIATVIEPIKNFYDAEEYHQLYLDKNPQGYA............. 178
9 -77.2003e0m_A mol:protein length:313 Peptide methionine sulfoxide reductase msrA/m  ali model follow..  35  1.........................................HMAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKE--TDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERM-----LGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGYCHI........... 153
10 -9.6802ofg_X mol:protein length:111 Zinc-transporting ATPase  ali model follow..  17  20.................................................TSCKLKIEGSLERLKGVAEASVTVA-------------------TGRLTVTYDPKQVSEITIQERI-------------AALG--YTLAEPKSSVTLNGHKHPHSHR........................................................ 92

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.