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Query: 2gt3_A mol:protein length:212 Methionine Sulfoxide Reductase A, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210
# Score Template Links and tools%idFirst MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEALast
1 -130.0002gt3_A mol:protein length:212 Methionine Sulfoxide Reductase A  ali model  100  1MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA 212
2 -124.0001fva_A mol:protein length:217 PEPTIDE METHIONINE SULFOXIDE REDUCTASE  ali model follow..  58  8RMGDSAAKIVSPQEALPGRKEPLVVAAKHHVNGNRTEPFPEGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHG-FGLITTDIREGQTFYYAEDYHQQYLSKDPDGYCGLGGTGVSCPL.. 217
3 -124.0002l90_A mol:protein length:212 Peptide methionine sulfoxide reductase  ali model follow..  56  3....SASKVISAEEALPGRTEPIPVTAKHHVSGNRTEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHN-FGPITTDIREGQVFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPMAI 210
4 -110.0004d7l_A mol:protein length:240 PEPTIDE METHIONINE SULFOXIDE REDUCTASE MSRA  ali model follow..  46  16GWLFGAPRLVEEKDALKGGPHPLPNPQPHAVLGTLRG--QPGTETIYIGIGCYWGAEKLFWETPGVVYTSVGFAGGITPNPTYRETCTGRTNHTEIVEVVYDPTQVTFDELVVKAMEAHDPTQGYRQGNDTGTQYRSAIYTAGPNAEQQAQRAREIYAPKLAAAG-LGRITTEILPAGEYYMAEDEHQQYLHKNPLGYCPHHSTGVACGIPE 233
5 -105.0002j89_A mol:protein length:261 METHIONINE SULFOXIDE REDUCTASE A  ali model follow..  42  50PISYYKPPMANILSKLGGTRSPDPSTMDPTIPQGPDDLPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNRK-----IVTEILPAKKFYRAEEYHQQYLAKGGRGFMQSAEKGCNDPI.. 257
6 -79.8004lwj_A mol:protein length:217 Peptide methionine sulfoxide reductase MsrA  ali model follow..  37  4.......................................NQKLSIAVFALGCFWGPDAQFGSIKGVVSTRVGYAGGTTNNPSYYNLG----DHSESIEIQYDANVITYGELLNIFWNLHNPVY-----ETTNRQYMSRIFYLDDGQKSEALEMKRQIEAA-----NGEKIYTEIVPLENFYLAEGYHQKYYLQNTTLYQTLKAIYGGFG... 160
7 -73.6003bqe_A mol:protein length:194 Peptide methionine sulfoxide reductase msrA/m  ali model follow..  41  2.........................................NTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQL-----PLVVENEPLKNFYDAEEYHQDYLIKNPNGYCHI........... 156
8 -73.0003pin_B mol:protein length:183 Peptide methionine sulfoxide reductase  ali model follow..  33  12.......................................PAKDKLITLASGSFWGTEHMYRKYDRIVDSKVGYANGEESSVSYKRVSGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGN-----KIATVIEPIKNFYDAEEYHQLYLDKNPQGYA............. 174
9 -72.6003pim_A mol:protein length:187 Peptide methionine sulfoxide reductase  ali model follow..  34  16.......................................PAKDKLITLACGCFWGTEHMYRKYDRIVDCKVGYANGEPSSVSYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGN-----KIATVIEPIKNFYDAEEYHQLYLDKNPQGYA............. 178
10 -68.6001nwa_A mol:protein length:203 Peptide methionine sulfoxide reductase msrA  ali model follow..  43  13........................................TSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHG----THAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEAS-------GKVVTEVSPAGDFWEAEPEHQDYLQRYPNGTCHF........... 167
11 -68.1004gwb_A mol:protein length:168 Peptide methionine sulfoxide reductase MsrA 3  ali model follow..  43  2..........................................TKRAVLAGGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHG----THAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEAS-------GKVVTEVEPVRDFWEAEPEHQNYLERYPNGTCHF........... 154
12 -54.4003e0m_A mol:protein length:313 Peptide methionine sulfoxide reductase msrA/m  ali model follow..  35  1.........................................HMAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKE--TDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGR-----KIAVEVEQLRHYILAEDYHQDYLRKNPSGYCHI........... 153

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.