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Query: 2ddu_A mol:protein length:387 reelin, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GRSEKQKQVIPVVNPTLPQNFYEKPAFDYPMNQMSVWLMLANEGMAKNDSFCATTPSAMVFGKSDGDRFAVTRDLTLKPGYVLQFKLNIGCTSQFSSTAPVLLQYSHDAGMSWFLVKEGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPLDTRNIRLVQFYIQIGSKTSGITCIKPRARNEGLVVQYSNDNGILWHLLRELDFMSFLEPQIISIDLPREAKTPATAFRWWQPQHGKHSAQWALDDVLISRLENLYFQLast
1 -189.0002ddu_A mol:protein length:387 reelin  ali model  100  1GRSEKQKQVIPVVNPTLPQNFYEKPAFDYPMNQMSVWLMLANEGMAKNDSFCATTPSAMVFGKSDGDRFAVTRDLTLKPGYVLQFKLNIGCTSQFSSTAPVLLQYSHDAGMSWFLVKEGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPLDTRNIRLVQFYIQIGSKTSGITCIKPRARNEGLVVQYSNDNGILWHLLRELDFMSFLEPQIISIDLPREAKTPATAFRWWQPQHGKHSAQWALDDVLISRLENLYFQ 387
2 -70.1002e26_A mol:protein length:725 Reelin  ali model follow..  32  364.........IDQILIGGNISGNTVLEDDFSTLDSRKWLLHPGGTKMPV---CGSTGDALVFIEKASTRYVVTTDIAVNEDSFLQIDFAASCSVTDSC-YAIELEYSVDLGLSWHPLVRDCLP------TNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPF-DKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNLTNAEFIQFYFMYG------CLITPSNRNQGVLLEYSVNGGITWNLLMEIFYDQYSKPGFVNILLPPDAKEIATRFRWWQPRDGLDQNDWAIDNVLISRLENLYFQ 725
3 -29.0002p28_B mol:protein length:217 Integrin beta-2  ali model follow..  9  2..................................................................................LSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC-------------------RCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQSCRKDNNSIICSGLGDCVCGQCVPGKLIYGQYCECDTINCERYNGQVCGGP--------GRGLCFCGKCRCHPGFEGSACQ................................................................................... 213
4 -26.1002p26_A mol:protein length:280 Integrin beta-2  ali model follow..  14  104..................................................................................................SRVFLDHNALPDTLKVTYDSFCSNGVTHRNQP-RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGF----TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQSCRKDNNSIICSGLGDCVCGQCLCHTSIYGQYCE.................................................................................................................................. 274
5 -22.9002vj2_A mol:protein length:169 JAGGED-1  ali model follow..  11  3...........................................................................................................GSGSIEGRSAVTCDDYYYGFGCNKFCRPRDDDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD--KCIPHPGCVHGICNEPQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGQCSCPEGYSGPNCEI................................................................................................................................. 163
6 -22.8001yuk_B mol:protein length:120 Integrin beta-2 B chain  ali model follow..  15  1..................................................................................................SRVFLDHNALPDTLKVTYDSFCSNGVTHRNQP-RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGF----TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEHH.................................................................................................................................................................... 120
7 -21.4002wgc_A mol:protein length:171 WHEAT GERM LECTIN  ali model follow..  12  18.....................................................................................................................................................................................................CSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGACSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCS----KWGSCGIGPGYCGAGCQSGGCDA.................................................................................. 171
8 -20.4002ygo_A mol:protein length:188 WNT INHIBITORY FACTOR 1  ali model follow..  7  2.....................................................TGSLYLWIDAHQARVLIFEEDILIVSEGKMA-PFTHDFRKAQQRMPAIPVNIHSMNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQQAECPGGCRNGGFCNERICECPDGFHGPHCEGT.................................................................................................................................................................... 181
9 -20.3002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model follow..  14  157...........................................................................................................NGGFCNERRICECPDGFHGPHCEKALCTPRCMTPGFCICPPGFYGVNCDKANCSTTCFNGGTCF-YPGKCICPPGLEGEQCEI-SKCPQPCRNGGKCIGKKCKCSKGYQGDLCSKPVCEPG-----CGAHGTCEPNKCQCQEGWHGRHCNKRYEASLIGTK....................................................................................................................... 318
10 -20.1001dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model follow..  10  2.................................................................................................................NAFLEELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA-------------------------------SSPCQNGGSCKDQICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDSCRCHEGYSLLADGVSCTP............................................................................................................................. 129
11 -19.8001wgc_A mol:protein length:171 WHEAT GERM LECTIN  ali model follow..  13  2.........................................................................................RCGEQGSNMECPNNLCCSQYG-YCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCT-----NNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCKWGSCGIGPGYCGAGCQSGGCDG............................................................................................................................ 171
12 -19.4001pfx_L mol:protein length:146 FACTOR IXA  ali model follow..  13  47............................................................................................................................................................................................DGDQCEPNPCLNGGLCKDDECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSLCSCTTGYRLAPDQKSCKP............................................................................................................................. 126
13 -19.2001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model follow..  10  1.....................................................................................................................EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE-------------------------------TSPCQNQGKCKDGTCTCLEGFEGKNCELFTCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP............................................................................................................................. 121
14 -19.1002gy5_A mol:protein length:423 Angiopoietin-1 receptor  ali model follow..  7  38..............................................DFEALMNQHQDPLEVTQDVTREWAKKVVWKREKASKINGAYFCEGRVRGEAIRIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKEEDPRHEVPDILEVHLPHAQPQDAYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLC---TACMNNGVCDTGECICPPGFMGRTCECKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPG--FYGPDCKLRCSCNNGEMCDRFQ----CLCSPGWQGLQCER.................................................................................. 320
15 -19.1001k7t_A mol:protein length:186 agglutinin isolectin 3  ali model follow..  12  1.....................................................................................................................ERCGEQGSGMECP--------------------NNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTWGSCGIGPGYCGAGCQSGGCDGVF.......................................................................................................................... 173
16 -19.1001aut_L mol:protein length:114 ACTIVATED PROTEIN C  ali model follow..  21  18.................................................................................................................................................................................................CASLCCGHGTCIDGSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEERCSCAPGYKLGDDLLQCHP............................................................................................................................. 94
17 -18.3003eto_A mol:protein length:242 Neurogenic locus notch homolog protein 1  ali model follow..  9  3...................................................................................................................................................................................................EACEGNKVCSLQCNNHACGWDGGDCSLNFNDPWKN----------CTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVP---------ERLAAGTLVVVVLMPPEQLRNSSFTNVVFKRDAHGQQMIFPYYGMDVRGSIVYLEIDNRQCVQASSQCFQ 203
18 -18.2001p0s_L mol:protein length:138 Coagulation factor X precursor  ali model follow..  10  6.....................................................................................................................EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE-------------------------------TSPCQNQGKCKDGTCTCLEGFEGKNCELFTCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP............................................................................................................................. 126
19 -17.9002oo4_A mol:protein length:234 Neurogenic locus notch homolog protein 2  ali model follow..  9  2...................................................................................................................................................................................................ATCLRDGVCDEACNSHACQWDGGDCSLTMENPWAN---CSSPLPCWDINNQCDELCNTVECLF--DNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPENEGTLVIVVLMPPEQLLQDARSFLRALGTLLHTNLRIKRDSQGELMVYPYYGEVAGSKVFL-EIDNRQCVQDSDHCFK 198
20 -17.6002vj3_A mol:protein length:135 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  10  1.......................................................................................................................................................................................SAQDVDECSLGANPCEHAGKCINTECQCLQGYTGPRCEVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT--DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN........................................................................... 133
21 -17.6003i08_A mol:protein length:220 Neurogenic locus notch homolog protein 1  ali model follow..  9  1.........................................................................................................................................................................................................GEEACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEYCKDHFSDGHCDQGCNSAECEWDGLDCAEH-----------VPERLAAGTLVVVVLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQ..................... 169
22 -17.5002qn5_B mol:protein length:133 Bowman-Birk type bran trypsin inhibitor  ali model follow..  8  1..........................................................................................................................................................MERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAAC---KSCREAPGPFPGKLICEDIYWGADPGPFCTPRPWGDCCDKAFCN-KMNPPTCRCMDEVKECADACKDCQ........................................................................................................................... 106
23 -17.1004D90 Entity 1(prereleased)  ali follow..  14  3..........................................................................................CDPNPCENGGICLPGLADGSFS-----CECPDGFTDPNCSSVVEVASDEEEPTSAGPCT---------------------------------------------PNPCHNGGTCEISVCKCPRGFNGIHCQINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGGG............................................................................................................................. 137
24 -17.0003TH2 Entity 1(prereleased)  ali follow..  10  5...............................................................................................................................................................................LXRTKLFWISY-SDGDQCASSPCQNGGSCKDQICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDSCRCHEGYSLLADGVSCTP............................................................................................................................. 100
25 -16.9001fax_L mol:protein length:96 FACTOR XA  ali model follow..  14  3............................................................................................................................................................................................DGDQCETSPCQNQGKCKDGTCTCLEGFEGKNCELFTCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGK................................................................................................................................. 79
26 -16.9003l95_X mol:protein length:244 Neurogenic locus notch homolog protein 1  ali model follow..  12  2...................................................................................................................................................................................................SACEGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTLVV---VVLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYGDVRGSIVYLEQASSQCFQSATDVAAFLGALASLGSLNIPY-------------IEAVQSETVEPA... 236
27 -14.7002wcy_A mol:protein length:155 COMPLEMENT COMPONENT C7  ali model follow..  11  1........................................................................................................................................................................................GSHMNPLTQAVPKCQRWEKLQNSRCVCKMPYECGPSL------DVCAQDERSKRILPLTVCKMHVLHCQGRNYTLTGRDSCTLPASAEKACGACP-DAESSKCVCREASECEEEGFSICVE.................................................................................. 119
28 -13.9001tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model follow..  7  3...............................................................................................................................................................................QVICRDEKTQMIYQQHQSWLRPVLRSNRVE--YCWCNSGRAQKSCSEPRCF---NGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRAT............................................................................................................................ 91
29 -13.7003zyj_B mol:protein length:426 NETRIN-G1  ali model follow..  11  42GKVWDYMACQPESTDMTKYLKVKLDPPDIT-DPPETFCAMGNPYMCNNECDAEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPMILEKSLDYGRTWQVLEIICTEEYSTGYTTGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRC--KCNLHATCVKLTCECEHNTTGPDCGKCKNVCDNELLHCQNGGTCNNVRCLCPAAYTGILCEKLRCEE............................................................................................................................ 403
30 -13.6001xdt_R mol:protein length:79 HEPARIN-BINDING EPIDERMAL GROWTH FACTOR  ali model follow..  25  40.............................................................................................................................................................................................CLRKYKDFC--HGECKY-SCICHPGYHGERCHGLS................................................................................................................................................................... 79
31 -13.3001eis_A mol:protein length:89 PROTEIN (AGGLUTININ ISOLECTIN VI/AGGLUTININ I  ali model follow..  14  18.....................................................................................................................................................................................................CSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGA--AVGNPPCGQDRCCSVHGWCGGGCSGGNCQYRC.......................................................................................................................... 86
32 -12.9001iqb_A mol:protein length:89 AGGLUTININ ISOLECTIN I  ali model follow..  13  18.....................................................................................................................................................................................................CSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGA--AVGNPPCGQDRCCSVHGWCGGGCSGSKCQYRC.......................................................................................................................... 86
33 -12.9001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model follow..  14  6.....................................................................................................................EEVKQGNLERECLEEACSLEEAREVFEDAEQTDEFWSKYKDGDQCE-------------------------------GHPCLNQGHCKDGTCTCAEGFEGKNCEF..................................................................................................................................................................... 83
34 -12.8001l3y_A mol:protein length:41 Integrin beta-2:CYSTEINE-RICH MODULE 3  ali model follow..  26  16....................................................................................................................................................................................................GGPGRGLCFCGKCRCHPGFEGSACQA..................................................................................................................................................................... 41
35 -12.7003v4p_B mol:protein length:503 Integrin beta-7  ali model follow..  16  455......................................................................................................................................................................................CDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLENLYFQ............................................................................................................................................................ 503
36 -12.5001skz_A mol:protein length:119 ANTISTASIN  ali model follow..  11  1.........................................................................................................................................................................................EDPFGPGCEEAGCPEGSACITDRCTCSGVRCRVHCPHMKATCDISECPEGMMCSRLTNKCDCKIDINCRKT................................................................................................................................... 91
37 -12.5001uln_A mol:protein length:84 lectin-D  ali model follow..  14  5...................................................................................................................................................................................................GERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQDMCCSKYGWCGYSDDHCEDGCQS-QCDLT................................................................................................................................ 84
38 -12.2001hre_A mol:protein length:67 HEREGULIN ALPHA  ali model follow..  31  8.............................................................................................................................................................................................CAEKEKTFCVNGGECFM-LCKCQPGFTGARCT...................................................................................................................................................................... 48
39 -12.1001ulk_A mol:protein length:126 lectin-C  ali model follow..  11  1....................................................................................................................APVCGVRASGRVCPCGTTEEYCGKGCQSQCDYNRCGKEFGGKECHDELCCSQYGWCGNSDGHCGEGCQSQCSYWRCGKDFGCSQYGWCGLTDDHCEDGCQSQCDLPT.................................................................................................................................................................... 126
40 -12.1001ehd_A mol:protein length:89 AGGLUTININ ISOLECTIN VI  ali model follow..  15  18.....................................................................................................................................................................................................CSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVCSVHGWCGGGNDYCSGGKCQYRCS.................................................................................................................................. 87
41 -12.0001p9j_A mol:protein length:54 chimera of Epidermal growth factor(EGF) and T  ali model follow..  25  8.............................................................................................................................................................................................CPLSHDGYCLHDGVCMY-ACNCVVGYIGERCQ...................................................................................................................................................................... 45
42 -11.9001npe_B mol:protein length:164 Laminin gamma-1 chain  ali model follow..  12  23.....................................................................................................................THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCICKEGFFGNPLAPNPAKACACNPYGTVVTGQCQCLPHVSGRDCG------------------------TCDPGYYNLQCE.................................................................................................................................. 163
43 -11.8001ob1_C mol:protein length:99 MAJOR MEROZOITE SURFACE PROTEIN  ali model follow..  12  1..........................................................................................................................................................................................NISQHQCVKKQCPQNSGCFRHECKCLLNYKQETCNENNGGCDADAKCTEEDSGSNGKKCECTKPDSGIFCS.................................................................................................................................. 93
44 -11.7001cej_A mol:protein length:96 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  17  1..........................................................................................................................................................................................NISQHQCVKKQCPQNSGCFRHECKCLLNYKGDKCENPNPTCNENNGGCDADAKCTEETCECTKPDSGIFCSSSN............................................................................................................................... 96
45 -11.6001bk9_A mol:protein length:124 PHOSPHOLIPASE A2  ali model follow..  10  38...............................................................................................................................................................................................DATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIV-----CGGDDPCKKEICECDRAAA....................................................................................................................................... 93
46 -11.6001n1i_A mol:protein length:105 Merozoite surface protein-1  ali model follow..  16  15..................................................................................................................................................................................................DTNVPENAACYRYEWRCLLGFKGGKCVPASITCEENNGGCAPEAECTMDECKCTKEGSGVFCSSSSGP............................................................................................................................. 99
47 -11.5001ivo_C mol:protein length:53 Epidermal growth factor  ali model follow..  25  6.............................................................................................................................................................................................CPLSHDGYCLHDGVCMY-ACNCVVGYIGERCQ...................................................................................................................................................................... 43
48 -11.3002i9a_A mol:protein length:145 Urokinase-type plasminogen activator  ali model follow..  15  12..................................................................................................................................................................................................NCDCLNGGTCVS-WCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDPCLPWNSATVLQQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWC---YVQVGLKPLVQECMVHDCADGKKPSSPPEE................................................................... 145
49 -11.3003ltf_D mol:protein length:58 Protein spitz  ali model follow..  22  13..................................................................................................................................................................................................AWYCLNDAHCFA-SCECAIGFMGQRCE...................................................................................................................................................................... 47
50 -11.1001z1y_A mol:protein length:186 ookinete surface protein Pvs25  ali model follow..  9  1..........................................................................................................................................................................................EAEASAVTVDTICKNGQLVQ-KCMCNEGLVHNECKKETLGKACGEFGQCIENPDPAQKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGE............................................................................... 139
51 -11.0003T3M Entity 2(prereleased)  ali follow..  27  444................................................................................................................................................................................................NSHRCNNGNGTFECGVCRCGPGWLGSQCE...................................................................................................................................................................... 472
52 -11.0001b9w_A mol:protein length:95 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  10  9..................................................................................................................................................................................................DTNVPENAACYRYEWRCLLYFKEPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVFCS............................................................................................................................. 89
53 -10.9001egf_A mol:protein length:53 EPIDERMAL GROWTH FACTOR  ali model follow..  24  5............................................................................................................................................................................................GCPSSYDGYCLNGGVCMH-TCNCVIGYSGDRCQ...................................................................................................................................................................... 43
54 -10.9003m1h_A mol:protein length:178 Lysine specific cysteine protease  ali model follow..  12  42........................................................................................................................................................................................................................................................AGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPGGGTLTFWVCAQDANY---------ASEHYAVYASSTGNDASNFANALLEEAQGTWYQKTVQLPA----GTKYVAFRHFGCTDF-FWINLDDVVITS....... 177
55 -10.8002y38_A mol:protein length:403 LAMININ SUBUNIT ALPHA-5  ali model follow..  14  108......................................................................VNVTLDLGQVFHVAYVLIKFANSP--RPDLWVLERSTDFGHTYQPWASSKRDCLERFGPRTLERITQDDDVICTTEYSRIVPLE-LLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTISIGGRCVCHGHADCDRLQCACQHNTCGGSCDRCPEVDRREASQNQDNVYQGGGVCDCQHHTTGINCERCLPG............................................................................................................................. 377
56 -10.7002gh0_A mol:protein length:213 GDNF family receptor alpha-3  ali model follow..  9  2......................................................................................................LNMLKPDSDLCLKFAMLCT---LNDKCDRLRKAYGEACSGPHCQRHVCLRQLLTFFEKAAEPHAQGLLLCPCAPNDRGCGERRRNTIAPNCALPLCFSDPLCRS-QTHCHPMDILGTCATEQSRCLRAPNFVSNVNTSVALSCTCRGGNLQEECEM................................................................................................................................. 180
57 -10.6003s8v_X mol:protein length:88 Dickkopf-related protein 1  ali model follow..  16  9...................................................................................................................................................................................................SVCLRSSDCASGLCICKPLKEGQVCTKHLEIFQRCYCGEGLSCRIQKDHHQASNSSRLHTCQ.................................................................................................................................. 86
58 -10.5003asi_A mol:protein length:410 Neurexin-1-alpha  ali model follow..  9  20..............ATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHY-LGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASLNGRLPDLISDALFCNGQIERGCEGPSTTCQ--------------EDSCSNQGVCLQQSCDCSMTFSGPLCNDPGTTYIFSKGGGQITYKWPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK-IGVKFNVGTDDIAIEESNAIINDGK-VVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQG------QLSGLYYNG....... 375
59 -10.5001gk5_A mol:protein length:49 MEGF/TGFALPHA44-50 CHIMERA  ali model follow..  25  6.............................................................................................................................................................................................CPSSYDGYCLNGGVCMH-TCNCVIGYSGDRCE...................................................................................................................................................................... 43
60 -10.5002npr_A mol:protein length:90 Merozoite surface protein 1  ali model follow..  14  10..................................................................................................................................................................................................DTNVPDNAACYRYEWRCLLTFKESNVTCKDNNGGCAPEAECKMTDSNKIVCKCTKEGSEPFCS.................................................................................................................................. 90
61 -10.4001a3p_A mol:protein length:45 EPIDERMAL GROWTH FACTOR  ali model follow..  20  3.............................................................................................................................................................................................APSSYDGYCLNGGVAMH-TCNCVIGYSGDRCQTRD................................................................................................................................................................... 43
62 -10.4002jmv_A mol:protein length:95 scytovirin  ali model follow..  16  33................................................................................................................................................................................................SSSGFCQGTSRKPDGPKGPTYCWDEAKNPGGPNRCSNSKQCDGARTCSSSGFCQGTAGHAAA..................................................................................................................................... 95
63 -10.3002rnl_A mol:protein length:50 Amphiregulin  ali model follow..  9  3....................................................................................................................................................................................SGSSGKKNPCNAEFQNFCIHGECKYIETCKCQQEYFGERCG...................................................................................................................................................................... 48
64 -10.3003s2k_C mol:protein length:97 Dickkopf-related protein 1  ali model follow..  16  13...................................................................................................................................................................................................SVCLRSSDCASGLCICKPLKEGQVCTKHREIFQRCYCGEGLSCRIQKDHHQASNSSRLHTCQ.................................................................................................................................. 90
65 -10.2002w86_A mol:protein length:147 FIBRILLIN-1  ali model follow..  12  5...................................................................................................................................................................................................DECESNGVCKNSICECSSESTLDPTKTICIETIKGTCWQTSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLC--VNTRGSFKCQCPSGMTLDATGRIC.................................................................................... 146
66 -9.8601mox_C mol:protein length:50 Transforming Growth Factor alpha  ali model follow..  18  8.............................................................................................................................................................................................CPDSHTQFCFHGTCRFLVACVCHSGYVGARCE...................................................................................................................................................................... 44
67 -9.8001fsb_A mol:protein length:40 P-SELECTIN  ali model follow..  21  1.............................................................................................................................................................................................TASCQDMSCSKQGECLETTCSCYPGFYGPECEY..................................................................................................................................................................... 37
68 -9.7202bo2_A mol:protein length:143 EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE  ali model follow..  13  3...............................................................................................................................................................................................RGCARWCPQDSSCVNAACRCNPGFSMETCDDINECATLSKVSCGKFSDCWNTDCVCSPGYEENTC................................................................................................................................... 93
69 -9.6703b4v_C mol:protein length:237 follistatin-like 3  ali model follow..  16  3..................................................................................................................................................................................................SGNPAPGGVCWEATCSLVL-----QTDVTRAECCASGNIDTAWSNLTHPGNKIHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECE................................................................................... 121
70 -9.5301iox_A mol:protein length:50 Betacellulin  ali model follow..  25  8.............................................................................................................................................................................................CPKQYKHYCIKGRCRFVVSCVCDEGYIGARCE...................................................................................................................................................................... 44
71 -9.4703r05_A mol:protein length:1254 Neurexin-1-alpha  ali model follow..  9  5GAEGQWTRF-----PKWNACCESEMSFQLKTRSAR--------------------GLVLYFDDEGFCDFL---ELILTRGGRLQLSFSIFCAEPATLLTDTPVNLFIDQVEAKWVEVKSKRRDFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVNSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSV-VCDCSTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQS-----------------------SSDEITLSFKTLQRNGLMLH-----TGKSADYVNLALKNGAVSLVINLGSGAF-EALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYT-DFFYVGGSPSTA.. 365
72 -9.4401edm_B mol:protein length:39 FACTOR IX  ali model follow..  20  1...........................................................................................................................................................................................VDGDQCESNPCLNGGSCKDDECWCPFGFEGKNCEL..................................................................................................................................................................... 39
73 -9.4103zyg_A mol:protein length:353 NETRIN-G2  ali model follow..  9  100.....................................................EEGLATYWQSITWSRYPSPLEANIT-NKTVELTDDVVMTFEYGRPTVMVLEKSLDNGRTWQPYAEDCMEAFGMSARRARDMSSSSAHRVLCTEAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRC--KCNLHANCSSLQCECEHNTTGPDCG------------------------KCKKNFRTPHGSPNACAGT........................................................................................................................... 347
74 -9.2802w2m_E mol:protein length:107 LOW-DENSITY LIPOPROTEIN RECEPTOR  ali model follow..  11  18...................................................................................................................................................................................................QGAMGTNECLDNECLCPDGFQQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQTKACK.................................................................................................................................. 101
75 -9.2703k6s_B mol:protein length:687 Integrin beta-2  ali model follow..  12  436.........................................................................................................LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQEL-EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCGKCRCHPGFEGSACQCERTTENPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPS----------------PCGKYISCAECLKFEKGPFGKNCSAA................................................................................. 624
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.