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Query: 2ddu_A mol:protein length:387 reelin, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GRSEKQKQVIPVVNPTLPQNFYEKPAFDYPMNQMSVWLMLANEGMAKNDSFCATTPSAMVFGKSDGDRFAVTRDLTLKPGYVLQFKLNIGCTSQFSSTAPVLLQYSHDAGMSWFLVKEGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPLDTRNIRLVQFYIQIGSKTSGITCIKPRARNEGLVVQYSNDNGILWHLLRELDFMSFLEPQIISIDLPREAKTPATAFRWWQPQHGKHSAQWALDDVLISRLENLYFQLast
1 -189.0002ddu_A mol:protein length:387 reelin  ali model  100  1GRSEKQKQVIPVVNPTLPQNFYEKPAFDYPMNQMSVWLMLANEGMAKNDSFCATTPSAMVFGKSDGDRFAVTRDLTLKPGYVLQFKLNIGCTSQFSSTAPVLLQYSHDAGMSWFLVKEGCFPASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPLDTRNIRLVQFYIQIGSKTSGITCIKPRARNEGLVVQYSNDNGILWHLLRELDFMSFLEPQIISIDLPREAKTPATAFRWWQPQHGKHSAQWALDDVLISRLENLYFQ 387
2 -70.1002e26_A mol:protein length:725 Reelin  ali model   32  364.........IDQILIGGNISGNTVLEDDFSTLDSRKWLLHPGGTKMPV---CGSTGDALVFIEKASTRYVVTTDIAVNEDSFLQIDFAASCSVTDSC-YAIELEYSVDLGLSWHPLVRDCLP------TNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPF-DKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNLTNAEFIQFYFMYG------CLITPSNRNQGVLLEYSVNGGITWNLLMEIFYDQYSKPGFVNILLPPDAKEIATRFRWWQPRDGLDQNDWAIDNVLISRLENLYFQ 725
3 -29.0002p28_B mol:protein length:217 Integrin beta-2  ali model   2..................................................................................LSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC-------------------RCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQSCRKDNNSIICSGLGDCVCGQCVPGKLIYGQYCECDTINCERYNGQVCGGP--------GRGLCFCGKCRCHPGFEGSACQ................................................................................... 213
4 -26.1002p26_A mol:protein length:280 Integrin beta-2  ali model   14  104..................................................................................................SRVFLDHNALPDTLKVTYDSFCSNGVTHRNQP-RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGF----TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQSCRKDNNSIICSGLGDCVCGQCLCHTSIYGQYCE.................................................................................................................................. 274
5 -22.9002vj2_A mol:protein length:169 JAGGED-1  ali model   11  3...........................................................................................................GSGSIEGRSAVTCDDYYYGFGCNKFCRPRDDDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD--KCIPHPGCVHGICNEPQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGQCSCPEGYSGPNCEI................................................................................................................................. 163
6 -22.8001yuk_B mol:protein length:120 Integrin beta-2 B chain  ali model   15  1..................................................................................................SRVFLDHNALPDTLKVTYDSFCSNGVTHRNQP-RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGF----TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEHH.................................................................................................................................................................... 120
7 -21.4002wgc_A mol:protein length:171 WHEAT GERM LECTIN  ali model   12  18.....................................................................................................................................................................................................CSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGACSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCS----KWGSCGIGPGYCGAGCQSGGCDA.................................................................................. 171
8 -20.4002ygo_A mol:protein length:188 WNT INHIBITORY FACTOR 1  ali model   2.....................................................TGSLYLWIDAHQARVLIFEEDILIVSEGKMA-PFTHDFRKAQQRMPAIPVNIHSMNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQQAECPGGCRNGGFCNERICECPDGFHGPHCEGT.................................................................................................................................................................... 181
9 -20.3002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model   14  157...........................................................................................................NGGFCNERRICECPDGFHGPHCEKALCTPRCMTPGFCICPPGFYGVNCDKANCSTTCFNGGTCF-YPGKCICPPGLEGEQCEI-SKCPQPCRNGGKCIGKKCKCSKGYQGDLCSKPVCEPG-----CGAHGTCEPNKCQCQEGWHGRHCNKRYEASLIGTK....................................................................................................................... 318
10 -20.1001dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model   10  2.................................................................................................................NAFLEELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA-------------------------------SSPCQNGGSCKDQICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDSCRCHEGYSLLADGVSCTP............................................................................................................................. 129
11 -19.8001wgc_A mol:protein length:171 WHEAT GERM LECTIN  ali model   13  2.........................................................................................RCGEQGSNMECPNNLCCSQYG-YCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCT-----NNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCKWGSCGIGPGYCGAGCQSGGCDG............................................................................................................................ 171
12 -19.4001pfx_L mol:protein length:146 FACTOR IXA  ali model   13  47............................................................................................................................................................................................DGDQCEPNPCLNGGLCKDDECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSLCSCTTGYRLAPDQKSCKP............................................................................................................................. 126
13 -19.2001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model   10  1.....................................................................................................................EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE-------------------------------TSPCQNQGKCKDGTCTCLEGFEGKNCELFTCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP............................................................................................................................. 121
14 -19.1002gy5_A mol:protein length:423 Angiopoietin-1 receptor  ali model   38..............................................DFEALMNQHQDPLEVTQDVTREWAKKVVWKREKASKINGAYFCEGRVRGEAIRIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKEEDPRHEVPDILEVHLPHAQPQDAYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLC---TACMNNGVCDTGECICPPGFMGRTCECKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPG--FYGPDCKLRCSCNNGEMCDRFQ----CLCSPGWQGLQCER.................................................................................. 320
15 -19.1001k7t_A mol:protein length:186 agglutinin isolectin 3  ali model   12  1.....................................................................................................................ERCGEQGSGMECP--------------------NNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTWGSCGIGPGYCGAGCQSGGCDGVF.......................................................................................................................... 173
16 -19.1001aut_L mol:protein length:114 ACTIVATED PROTEIN C  ali model   21  18.................................................................................................................................................................................................CASLCCGHGTCIDGSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEERCSCAPGYKLGDDLLQCHP............................................................................................................................. 94
17 -18.3003eto_A mol:protein length:242 Neurogenic locus notch homolog protein 1  ali model   3...................................................................................................................................................................................................EACEGNKVCSLQCNNHACGWDGGDCSLNFNDPWKN----------CTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVP---------ERLAAGTLVVVVLMPPEQLRNSSFTNVVFKRDAHGQQMIFPYYGMDVRGSIVYLEIDNRQCVQASSQCFQ 203
18 -18.2001p0s_L mol:protein length:138 Coagulation factor X precursor  ali model   10  6.....................................................................................................................EEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE-------------------------------TSPCQNQGKCKDGTCTCLEGFEGKNCELFTCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP............................................................................................................................. 126
19 -17.9002oo4_A mol:protein length:234 Neurogenic locus notch homolog protein 2  ali model   2...................................................................................................................................................................................................ATCLRDGVCDEACNSHACQWDGGDCSLTMENPWAN---CSSPLPCWDINNQCDELCNTVECLF--DNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPENEGTLVIVVLMPPEQLLQDARSFLRALGTLLHTNLRIKRDSQGELMVYPYYGEVAGSKVFL-EIDNRQCVQDSDHCFK 198
20 -17.6002vj3_A mol:protein length:135 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model   10  1.......................................................................................................................................................................................SAQDVDECSLGANPCEHAGKCINTECQCLQGYTGPRCEVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT--DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN........................................................................... 133
21 -17.6003i08_A mol:protein length:220 Neurogenic locus notch homolog protein 1  ali model   1.........................................................................................................................................................................................................GEEACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEYCKDHFSDGHCDQGCNSAECEWDGLDCAEH-----------VPERLAAGTLVVVVLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQ..................... 169
22 -17.5002qn5_B mol:protein length:133 Bowman-Birk type bran trypsin inhibitor  ali model   1..........................................................................................................................................................MERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAAC---KSCREAPGPFPGKLICEDIYWGADPGPFCTPRPWGDCCDKAFCN-KMNPPTCRCMDEVKECADACKDCQ........................................................................................................................... 106
23 -17.1004D90 Entity 1(prereleased)  ali follow..  14  3..........................................................................................CDPNPCENGGICLPGLADGSFS-----CECPDGFTDPNCSSVVEVASDEEEPTSAGPCT---------------------------------------------PNPCHNGGTCEISVCKCPRGFNGIHCQINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGGG............................................................................................................................. 137
24 -17.0003TH2 Entity 1(prereleased)  ali follow..  10  5...............................................................................................................................................................................LXRTKLFWISY-SDGDQCASSPCQNGGSCKDQICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDSCRCHEGYSLLADGVSCTP............................................................................................................................. 100
25 -16.9001fax_L mol:protein length:96 FACTOR XA  ali model   14  3............................................................................................................................................................................................DGDQCETSPCQNQGKCKDGTCTCLEGFEGKNCELFTCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGK................................................................................................................................. 79
26 -16.9003l95_X mol:protein length:244 Neurogenic locus notch homolog protein 1  ali model   12  2...................................................................................................................................................................................................SACEGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTLVV---VVLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYGDVRGSIVYLEQASSQCFQSATDVAAFLGALASLGSLNIPY-------------IEAVQSETVEPA... 236
27 -14.7002wcy_A mol:protein length:155 COMPLEMENT COMPONENT C7  ali model   11  1........................................................................................................................................................................................GSHMNPLTQAVPKCQRWEKLQNSRCVCKMPYECGPSL------DVCAQDERSKRILPLTVCKMHVLHCQGRNYTLTGRDSCTLPASAEKACGACP-DAESSKCVCREASECEEEGFSICVE.................................................................................. 119
28 -13.9001tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model   3...............................................................................................................................................................................QVICRDEKTQMIYQQHQSWLRPVLRSNRVE--YCWCNSGRAQKSCSEPRCF---NGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRAT............................................................................................................................ 91
29 -13.7003zyj_B mol:protein length:426 NETRIN-G1  ali model   11  42GKVWDYMACQPESTDMTKYLKVKLDPPDIT-DPPETFCAMGNPYMCNNECDAEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPMILEKSLDYGRTWQVLEIICTEEYSTGYTTGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRC--KCNLHATCVKLTCECEHNTTGPDCGKCKNVCDNELLHCQNGGTCNNVRCLCPAAYTGILCEKLRCEE............................................................................................................................ 403
30 -13.6001xdt_R mol:protein length:79 HEPARIN-BINDING EPIDERMAL GROWTH FACTOR  ali model   25  40.............................................................................................................................................................................................CLRKYKDFC--HGECKY-SCICHPGYHGERCHGLS................................................................................................................................................................... 79
31 -13.3001eis_A mol:protein length:89 PROTEIN (AGGLUTININ ISOLECTIN VI/AGGLUTININ I  ali model   14  18.....................................................................................................................................................................................................CSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGA--AVGNPPCGQDRCCSVHGWCGGGCSGGNCQYRC.......................................................................................................................... 86
32 -12.9001iqb_A mol:protein length:89 AGGLUTININ ISOLECTIN I  ali model   13  18.....................................................................................................................................................................................................CSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGA--AVGNPPCGQDRCCSVHGWCGGGCSGSKCQYRC.......................................................................................................................... 86
33 -12.9001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model   14  6.....................................................................................................................EEVKQGNLERECLEEACSLEEAREVFEDAEQTDEFWSKYKDGDQCE-------------------------------GHPCLNQGHCKDGTCTCAEGFEGKNCEF..................................................................................................................................................................... 83
34 -12.8001l3y_A mol:protein length:41 Integrin beta-2:CYSTEINE-RICH MODULE 3  ali model   26  16....................................................................................................................................................................................................GGPGRGLCFCGKCRCHPGFEGSACQA..................................................................................................................................................................... 41
35 -12.7003v4p_B mol:protein length:503 Integrin beta-7  ali model   16  455......................................................................................................................................................................................CDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLENLYFQ............................................................................................................................................................ 503
36 -12.5001skz_A mol:protein length:119 ANTISTASIN  ali model   11  1.........................................................................................................................................................................................EDPFGPGCEEAGCPEGSACITDRCTCSGVRCRVHCPHMKATCDISECPEGMMCSRLTNKCDCKIDINCRKT................................................................................................................................... 91
37 -12.5001uln_A mol:protein length:84 lectin-D  ali model   14  5...................................................................................................................................................................................................GERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQDMCCSKYGWCGYSDDHCEDGCQS-QCDLT................................................................................................................................ 84
38 -12.2001hre_A mol:protein length:67 HEREGULIN ALPHA  ali model   31  8.............................................................................................................................................................................................CAEKEKTFCVNGGECFM-LCKCQPGFTGARCT...................................................................................................................................................................... 48
39 -12.1001ulk_A mol:protein length:126 lectin-C  ali model   11  1....................................................................................................................APVCGVRASGRVCPCGTTEEYCGKGCQSQCDYNRCGKEFGGKECHDELCCSQYGWCGNSDGHCGEGCQSQCSYWRCGKDFGCSQYGWCGLTDDHCEDGCQSQCDLPT.................................................................................................................................................................... 126
40 -12.1001ehd_A mol:protein length:89 AGGLUTININ ISOLECTIN VI  ali model   15  18.....................................................................................................................................................................................................CSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVCSVHGWCGGGNDYCSGGKCQYRCS.................................................................................................................................. 87
41 -12.0001p9j_A mol:protein length:54 chimera of Epidermal growth factor(EGF) and T  ali model   25  8.............................................................................................................................................................................................CPLSHDGYCLHDGVCMY-ACNCVVGYIGERCQ...................................................................................................................................................................... 45
42 -11.9001npe_B mol:protein length:164 Laminin gamma-1 chain  ali model   12  23.....................................................................................................................THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCICKEGFFGNPLAPNPAKACACNPYGTVVTGQCQCLPHVSGRDCG------------------------TCDPGYYNLQCE.................................................................................................................................. 163
43 -11.8001ob1_C mol:protein length:99 MAJOR MEROZOITE SURFACE PROTEIN  ali model   12  1..........................................................................................................................................................................................NISQHQCVKKQCPQNSGCFRHECKCLLNYKQETCNENNGGCDADAKCTEEDSGSNGKKCECTKPDSGIFCS.................................................................................................................................. 93
44 -11.7001cej_A mol:protein length:96 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model   17  1..........................................................................................................................................................................................NISQHQCVKKQCPQNSGCFRHECKCLLNYKGDKCENPNPTCNENNGGCDADAKCTEETCECTKPDSGIFCSSSN............................................................................................................................... 96
45 -11.6001bk9_A mol:protein length:124 PHOSPHOLIPASE A2  ali model   10  38...............................................................................................................................................................................................DATDRCCFVHDCCYGKVTGCDPKMDVYSFSEENGDIV-----CGGDDPCKKEICECDRAAA....................................................................................................................................... 93
46 -11.6001n1i_A mol:protein length:105 Merozoite surface protein-1  ali model   16  15..................................................................................................................................................................................................DTNVPENAACYRYEWRCLLGFKGGKCVPASITCEENNGGCAPEAECTMDECKCTKEGSGVFCSSSSGP............................................................................................................................. 99
47 -11.5001ivo_C mol:protein length:53 Epidermal growth factor  ali model   25  6.............................................................................................................................................................................................CPLSHDGYCLHDGVCMY-ACNCVVGYIGERCQ...................................................................................................................................................................... 43
48 -11.3002i9a_A mol:protein length:145 Urokinase-type plasminogen activator  ali model   15  12..................................................................................................................................................................................................NCDCLNGGTCVS-WCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDPCLPWNSATVLQQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWC---YVQVGLKPLVQECMVHDCADGKKPSSPPEE................................................................... 145
49 -11.3003ltf_D mol:protein length:58 Protein spitz  ali model   22  13..................................................................................................................................................................................................AWYCLNDAHCFA-SCECAIGFMGQRCE...................................................................................................................................................................... 47
50 -11.1001z1y_A mol:protein length:186 ookinete surface protein Pvs25  ali model   1..........................................................................................................................................................................................EAEASAVTVDTICKNGQLVQ-KCMCNEGLVHNECKKETLGKACGEFGQCIENPDPAQKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGE............................................................................... 139
51 -11.0003T3M Entity 2(prereleased)  ali follow..  27  444................................................................................................................................................................................................NSHRCNNGNGTFECGVCRCGPGWLGSQCE...................................................................................................................................................................... 472
52 -11.0001b9w_A mol:protein length:95 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model   10  9..................................................................................................................................................................................................DTNVPENAACYRYEWRCLLYFKEPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVFCS............................................................................................................................. 89
53 -10.9001egf_A mol:protein length:53 EPIDERMAL GROWTH FACTOR  ali model   24  5............................................................................................................................................................................................GCPSSYDGYCLNGGVCMH-TCNCVIGYSGDRCQ...................................................................................................................................................................... 43
54 -10.9003m1h_A mol:protein length:178 Lysine specific cysteine protease  ali model   12  42........................................................................................................................................................................................................................................................AGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPGGGTLTFWVCAQDANY---------ASEHYAVYASSTGNDASNFANALLEEAQGTWYQKTVQLPA----GTKYVAFRHFGCTDF-FWINLDDVVITS....... 177
55 -10.8002y38_A mol:protein length:403 LAMININ SUBUNIT ALPHA-5  ali model   14  108......................................................................VNVTLDLGQVFHVAYVLIKFANSP--RPDLWVLERSTDFGHTYQPWASSKRDCLERFGPRTLERITQDDDVICTTEYSRIVPLE-LLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTISIGGRCVCHGHADCDRLQCACQHNTCGGSCDRCPEVDRREASQNQDNVYQGGGVCDCQHHTTGINCERCLPG............................................................................................................................. 377
56 -10.7002gh0_A mol:protein length:213 GDNF family receptor alpha-3  ali model   2......................................................................................................LNMLKPDSDLCLKFAMLCT---LNDKCDRLRKAYGEACSGPHCQRHVCLRQLLTFFEKAAEPHAQGLLLCPCAPNDRGCGERRRNTIAPNCALPLCFSDPLCRS-QTHCHPMDILGTCATEQSRCLRAPNFVSNVNTSVALSCTCRGGNLQEECEM................................................................................................................................. 180
57 -10.6003s8v_X mol:protein length:88 Dickkopf-related protein 1  ali model   16  9...................................................................................................................................................................................................SVCLRSSDCASGLCICKPLKEGQVCTKHLEIFQRCYCGEGLSCRIQKDHHQASNSSRLHTCQ.................................................................................................................................. 86
58 -10.5003asi_A mol:protein length:410 Neurexin-1-alpha  ali model   20..............ATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHY-LGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASLNGRLPDLISDALFCNGQIERGCEGPSTTCQ--------------EDSCSNQGVCLQQSCDCSMTFSGPLCNDPGTTYIFSKGGGQITYKWPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK-IGVKFNVGTDDIAIEESNAIINDGK-VVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQG------QLSGLYYNG....... 375
59 -10.5001gk5_A mol:protein length:49 MEGF/TGFALPHA44-50 CHIMERA  ali model   25  6.............................................................................................................................................................................................CPSSYDGYCLNGGVCMH-TCNCVIGYSGDRCE...................................................................................................................................................................... 43
60 -10.5002npr_A mol:protein length:90 Merozoite surface protein 1  ali model   14  10..................................................................................................................................................................................................DTNVPDNAACYRYEWRCLLTFKESNVTCKDNNGGCAPEAECKMTDSNKIVCKCTKEGSEPFCS.................................................................................................................................. 90
61 -10.4001a3p_A mol:protein length:45 EPIDERMAL GROWTH FACTOR  ali model   20  3.............................................................................................................................................................................................APSSYDGYCLNGGVAMH-TCNCVIGYSGDRCQTRD................................................................................................................................................................... 43
62 -10.4002jmv_A mol:protein length:95 scytovirin  ali model   16  33................................................................................................................................................................................................SSSGFCQGTSRKPDGPKGPTYCWDEAKNPGGPNRCSNSKQCDGARTCSSSGFCQGTAGHAAA..................................................................................................................................... 95
63 -10.3002rnl_A mol:protein length:50 Amphiregulin  ali model   3....................................................................................................................................................................................SGSSGKKNPCNAEFQNFCIHGECKYIETCKCQQEYFGERCG...................................................................................................................................................................... 48
64 -10.3003s2k_C mol:protein length:97 Dickkopf-related protein 1  ali model   16  13...................................................................................................................................................................................................SVCLRSSDCASGLCICKPLKEGQVCTKHREIFQRCYCGEGLSCRIQKDHHQASNSSRLHTCQ.................................................................................................................................. 90
65 -10.2002w86_A mol:protein length:147 FIBRILLIN-1  ali model   12  5...................................................................................................................................................................................................DECESNGVCKNSICECSSESTLDPTKTICIETIKGTCWQTSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLC--VNTRGSFKCQCPSGMTLDATGRIC.................................................................................... 146
66 -9.8601mox_C mol:protein length:50 Transforming Growth Factor alpha  ali model   18  8.............................................................................................................................................................................................CPDSHTQFCFHGTCRFLVACVCHSGYVGARCE...................................................................................................................................................................... 44
67 -9.8001fsb_A mol:protein length:40 P-SELECTIN  ali model   21  1.............................................................................................................................................................................................TASCQDMSCSKQGECLETTCSCYPGFYGPECEY..................................................................................................................................................................... 37
68 -9.7202bo2_A mol:protein length:143 EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE  ali model   13  3...............................................................................................................................................................................................RGCARWCPQDSSCVNAACRCNPGFSMETCDDINECATLSKVSCGKFSDCWNTDCVCSPGYEENTC................................................................................................................................... 93
69 -9.6703b4v_C mol:protein length:237 follistatin-like 3  ali model   16  3..................................................................................................................................................................................................SGNPAPGGVCWEATCSLVL-----QTDVTRAECCASGNIDTAWSNLTHPGNKIHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECE................................................................................... 121
70 -9.5301iox_A mol:protein length:50 Betacellulin  ali model   25  8.............................................................................................................................................................................................CPKQYKHYCIKGRCRFVVSCVCDEGYIGARCE...................................................................................................................................................................... 44
71 -9.4703r05_A mol:protein length:1254 Neurexin-1-alpha  ali model   5GAEGQWTRF-----PKWNACCESEMSFQLKTRSAR--------------------GLVLYFDDEGFCDFL---ELILTRGGRLQLSFSIFCAEPATLLTDTPVNLFIDQVEAKWVEVKSKRRDFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVNSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSV-VCDCSTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQS-----------------------SSDEITLSFKTLQRNGLMLH-----TGKSADYVNLALKNGAVSLVINLGSGAF-EALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYT-DFFYVGGSPSTA.. 365
72 -9.4401edm_B mol:protein length:39 FACTOR IX  ali model   20  1...........................................................................................................................................................................................VDGDQCESNPCLNGGSCKDDECWCPFGFEGKNCEL..................................................................................................................................................................... 39
73 -9.4103zyg_A mol:protein length:353 NETRIN-G2  ali model   100.....................................................EEGLATYWQSITWSRYPSPLEANIT-NKTVELTDDVVMTFEYGRPTVMVLEKSLDNGRTWQPYAEDCMEAFGMSARRARDMSSSSAHRVLCTEAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRC--KCNLHANCSSLQCECEHNTTGPDCG------------------------KCKKNFRTPHGSPNACAGT........................................................................................................................... 347
74 -9.2802w2m_E mol:protein length:107 LOW-DENSITY LIPOPROTEIN RECEPTOR  ali model   11  18...................................................................................................................................................................................................QGAMGTNECLDNECLCPDGFQQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQTKACK.................................................................................................................................. 101
75 -9.2703k6s_B mol:protein length:687 Integrin beta-2  ali model   12  436.........................................................................................................LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQEL-EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCGKCRCHPGFEGSACQCERTTENPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPS----------------PCGKYISCAECLKFEKGPFGKNCSAA................................................................................. 624

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH,Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, HeymannB, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B,Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug;14(8):1211-7.