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1w1wA
Query: 1w1w_A mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIITLDLSNYAELast
1 -150.0001w1w_A mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1  ali model  100  1MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIITLDLSNYAE 430
2 -94.8001e69_A mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN  ali model follow..  28  1.MRLKKLYLKGFKSFGRPSLIGF-SDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKELRASEKFDMIFAGSENLPPAGSAY-------------VELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLG--------------------------------------------------------------------------------------------VDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLL---------FFGGEGRLNVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKH-TQFIVITHNKIVMEAADLLHGVTM--VNGVSAIVPVEVEKILE 313
3 -69.7003kta_B mol:protein length:173 Chromosome segregation protein smc  ali model follow..  37  1....................................................................................................................................................................................................................................................................MEKEKKNVFMRTFEAISRNFSEIFAKL---------SPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVMMANADKIIGVS--MRDGVSKVVSLSLEKAMK 158
4 -52.5003aux_A mol:protein length:371 DNA double-strand break repair rad50 ATPase  ali model follow..  17  3.MILKEIRMNNFKSHVNSRI---FEKGIVAIIGENGSGKSSIFEAVFFALFGAG---SNFNYDTIITKGKKSV----------YVELDFEVNGNNYKIIREYDSGRGGAKLYKNGKP---YATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDF-------------------------------------VRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANANRVECIILDEPTVYLDENRRAKLAEIFRKVKSIP-QMIIITHHRELEDVADVIINVKK--DGNVSKV.......... 367
5 -49.2001xew_X mol:protein length:182 SMC protein  ali model follow..  30  1MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSKAMRASRISDLIFAGSKNEPPAK------YAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS-PDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYDSKKEKALEE.................................................................................................................................................................................................................................................. 182
6 -48.9003qku_A mol:protein length:359 DNA double-strand break repair rad50 ATPase  ali model follow..  17  1.MKLERVTVKNFRSHSDTVV---FKEGINLIIGQNGSGKSSLLDAILVGL--WPLRIKDIKKDEFTKVGARD-------------------TYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWK-----------------------HVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYGGS-----GGIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWE--------------GKERPLTFLSGGERIALGLAFRLAMSLYGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS........ 359
7 -46.0003qkt_A mol:protein length:339 DNA double-strand break repair rad50 ATPase  ali model follow..  17  1.MKLERVTVKNFRSHSDTVV---FKEGINLIIGQNGSGKSSLLDAILVGL--WPLRIKDIKKDEFTKVGARD-------------------TYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKR-----------------------LVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNL-------------------------DKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWE--------------GKERPLTFLSGGERIALGLAFRLAMSLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS........ 339
8 -42.9003qkr_B mol:protein length:179 DNA double-strand break repair rad50 ATPase  ali model follow..  19  1.......................................................................................................................................................................................................................................AEKENRERVKKEIKDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTE---------GKYSEVVVRAE----ENKVRLFVVWEGKE-RPLTFLSGGERIALGLAFRLAMSLYGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISL--ENGSSKVEVVS...... 179
9 -35.6003euj_A mol:protein length:483 Chromosome partition protein mukB, Linker  ali model follow..  12  6RGKFRSLTLINWNGFFARTF---FDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLETVNSRAQR-ANKARVLSLNDLKEKFEETAVTFKPYHSITDYHSFMFDLGILPKRLRSSSDRNKFYKLIEASLYGGISSVITKSLRDYLLPENSGVRQAFQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIAFGQVKGVRLVDTHSILLNALSDQHEQHKDLFESQKLSFSEALAMLYKRINPHIELGQR-MPQTIGEELLDYRNYLDLEVETLRGAYGWMSSALSTGEAIGTGMSILLMVVQSWE-LPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA--ENISPERGTTYKLVRKILANQEYVHVVGLKGFG. 483
10 -32.5003tho_A mol:protein length:382 Probable DNA double-strand break repair Rad50  ali model follow..  16  12.MRPERLTVRNFLGLKNVDI---FQSGITVVEGPNGAGKSSLFEAISFAL---GNGIRYPNSYDYVNRNAVDGTARLVFQ-----ERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSGGAGGAGGSLEK-------------------------------KLKEMSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDW--------------GIERPARGLSGGERALISISLAMSLAEVASGRLFFIDEGFSSLCTENKEKIASVLKELERLNKVIVFITCDREFSEAFDRKLRITG--GVVVNE........... 376
11 -26.2003qkr_A mol:protein length:203 DNA double-strand break repair rad50 ATPase  ali model follow..  18  1.MKLERVTVKNFRSHSDTVV---FKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI-KDIKKDEFTKVGARD-------------------TYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISANAIYIRQGQIDAILES-DEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTEG.............................................................................................................................................................................................................................. 196
12 -23.5001qhl_A mol:protein length:227 PROTEIN (CELL DIVISION PROTEIN MUKB)  ali model follow..  14  5.GKFRSLTLINWNGFFARTF---LDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINS------RHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQAR-PLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDR........................................................................................................................................................................................................................................ 194
13 -17.6002o5v_A mol:protein length:359 DNA replication and repair protein recF  ali model follow..  18  4.VRLSALSTLNYRNLAPGTL---FPEGVTGIYGENGAGKTNLLEAAYLA---LTGQTDAPRIEQLIQAGETE-------------------AYVRADLQQGGSLSIQEVGLGR-GRRQLKVDGVRARTGDLPRG-----------GAVWIRPEDSELVFGPPSGRRAYLDSL-------------------------------------------LSRLSARYGEQLSRYERTVSQRNAALRGGEE--WAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLTESTSPETYAADRGRRAEELARGSTVTGPHRDDLLLTSRGEGRTVALALRRAELELGEDPVLLLDDFTAELDPHRRQYLLDLAAS----VPQAIVTG.................................... 327
14 -12.6003j16_B mol:protein length:608 Rli1p  ali model follow..  10  90............NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ-FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDMMGENGTGKTTLIKLLAGEGQDIPKLNVSMKPQKIAPKFPGTVRQLQEVQHLSGGELQRVAIVLALG----IPADIYLIDEPSAYLDSEQRIICSKVIRRFLHNKKTAFIVEHD--ATYLADKVI....................... 539
15 -12.6003ozx_A mol:protein length:538 RNase L inhibitor  ali model follow..  11  27...........................ILGVLGKNGVGKTTVLKILAGEIDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH--------SNVNDLSGGELQKLYIAATLA----KEADLYVLDQPSSYLDVEERYIVAKAIKRVTREKAVTFIIDHDLSIHDIADRII....................... 457
16 -12.1001yqt_A mol:protein length:538 RNase l inhibitor  ali model follow..  13  11RSHMEQLEEDGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEP--KTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLREVNELSGGELQRVAIAATLL----RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKEKTALVVEHDVLMIDVSDRLM....................... 467
17 -11.7002iw3_A mol:protein length:986 ELONGATION FACTOR 3A  ali model follow..  14  430......LCNCEFLAYGAKILLNKTQLRLKGICGPNGCGKSTLMRAIA---NGQVDGFPTQELDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNDEPTNHLDTVNVALVNYLNTCGITSITISHDSVFLDN--CEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEAWIPRGELVESHSKMVALGLDPEIVSHSRIRGLSGGQKVKLVLAAGT----WQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG---VIIITHSAEFTKLTEEVWAVKDGR................. 969
18 -11.6003bk7_A mol:protein length:607 ABC transporter ATP-binding protein  ali model follow..  13  83AISIVNLPEQGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEP--KTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLRNVEDLSGGELQRVAIAATLL----RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKEKTALVVEHDVLMIDVSDRLI....................... 543
19 -11.3002zu0_C mol:protein length:267 Probable ATP-dependent transporter sufC  ali model follow..  18  85...................................................................................................................................................................................................................................................................SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVFSGGEKKRNDILQMAVL---EPE-LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILD............................. 223
20 -11.2002ghi_A mol:protein length:260 transport protein  ali model follow..  13  81..................................................................................................................................................................................................................................................................KNVNKYNRNSIRSIIGIVPQDTILFNETIKYNDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK------LSGGERQRIAIARCL----LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTL-IIIAHRLSTISSAESIILLNKIVEKGTHKDL......... 240
21 -11.1002d2e_A mol:protein length:250 SufC protein  ali model follow..  20  110............................................................................................................................................................................................................................................................................................................GREVGVAEFWTKVKKALELLDWDESYLSRYLNEFSGGEKKRNEILQLLVL---EPT-YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILN............................. 207
22 -10.7001mv5_A mol:protein length:243 Multidrug resistance ABC transporter ATP-bind  ali model follow..  14  65...................................................................................................................................................................................................................................................................PIDNISLENWRSQIGFVSQDSAIMAGTIRENDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK------ISGGQRQRLAIARAF----LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTT-LVIAHRLSTIVDADKIYFIEK................... 212
23 -10.2002ff7_A mol:protein length:247 Alpha-hemolysin translocation ATP-binding pro  ali model follow..  20  139............................................................................................................................................................................................................................................................................................................................................GLSGGQRQRIAIARAL----VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT-VIIIAHRLSTVKNADRIIVMEK................... 212
24 -10.1002pcj_A mol:protein length:224 Lipoprotein-releasing system ATP-binding prot  ali model follow..  18  139...........................................................................................................................................................................................................................................................................................................................................YELSGGEQQRVAIARAL----ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEM..................... 212
25 -9.6603nh6_A mol:protein length:306 ATP-binding cassette sub-family B member 6, m  ali model follow..  18  110..................................................................................................................................................................................................................................................................QDISQVTQASLRSHIGVVPQDTVLFNDTIADNTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK------LSGGEKQRVAIARTI----LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT-IVVAHRLSTVVNADQILVIKCIVERGRHEAL......... 269
26 -9.3201jj7_A mol:protein length:260 PEPTIDE TRANSPORTER TAP1  ali model follow..  17  154............................................................................................................................................................................................................................................................................................................................................QLSGGQRQAVALARAL----IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRVLLITQHLSLVEQADHILFLEAIREGGTHQQL......... 241
27 -9.2502ixe_A mol:protein length:271 ANTIGEN PEPTIDE TRANSPORTER 1  ali model follow..  18  156............................................................................................................................................................................................................................................................................................................................................QLSGGQRQAVALARAL----IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRVLLITQQLSLAERAHHILFLKSVCEQGTHLQL......... 243
28 -9.0601l7v_C mol:protein length:249 Vitamin B12 transport ATP-binding protein btu  ali model follow..  14  1MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG---------------------------------------------------------------SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLQHDKTRTELLNDVAGALALDDKLG-------------------------------------------------------------------------------------------------------------------------------------------------RSTNQLSGGEWQRVRLAAVVLQITPQANPLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDNHTLRHAHRAWLLKGLTPPNLAQAYGMNFR.... 235

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.