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1vpyA
Query: 1vpy_A mol:protein length:289 PROTEIN (hypothetical protein EF0366), from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSDKIMIRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFRFVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENVAYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVGVIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLFLast
1 -130.0001vpy_A mol:protein length:289 PROTEIN (hypothetical protein EF0366)  ali model  100  1MGSDKIMIRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFRFVMKVYSGISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENVAYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVGVIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF 283
2 -95.9001vpq_A mol:protein length:273 hypothetical protein TM1631  ali model follow..  31  1MGSDKIMVYVGTSGFSFEDWKGLKPSQFLKYYWLGFRIVELNFTYYTQPSWRSFVQMLRKTPPDFYFTVKTPGSVTHVLWKE---KDPKEDMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESY-PYELAVEFRHYSWDR----EETYEFLRNHGITFVVVDEPKLP--GLFPYRPITTTDYAYFRFHGRNERWF----EAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFNNCYKGQAAINALQFKKMLEERV........... 267
3 -8.9003trk_A mol:protein length:324 Nonstructural polyprotein  ali model follow..  11  21...ETAGIKLNDRQWSFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYNHWDNRPGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPVNRRLPHSLVAEHRPVKINGHHVLLVSGYNLALPTKRVTWVAPLGVRGA-ATLGRYDLVVINIHTPKLQMLGGDSLRLLKPGGSLLIRAYG-----------------YADRTSERVICVLGRKFRPCVTSNTEMFFLFSNFDNGRRNFTTHVMNNQLNAAFVG......... 324
4 -8.7802g0w_A mol:protein length:296 Lmo2234 protein  ali model follow..  13.NLKKCPITISSYT-----GTEVSFPKRVKVAAENFDGIGL-ENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHMAR------LFGVKHINCGLLEKIPEEQIVALGELCDRAEELIIGLEF--MPYSGVADLQAAWRVAEACG-AQLICDTWHWANQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHDRLAPGEGYGDTVGFAKILKEHGVNPRVMGVEVISDSEYAALKVYNATKKVLDEAWPEISPR..... 290
5 -8.2501yx1_A mol:protein length:264 hypothetical protein PA2260  ali model follow..  2.HMSLHPVSISLSSYGADLVRSRGQASFLPLLAMAAQRVELREELFAGPPDEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPT--------------LRRAEACGAGWLKVSLGLLPEQPDLAALGRRLA-RHGLQLLVE--NDQTPQGGRIEVLERFFRLAERQ-MTFDIGNWRWQEQAADEAALRLGRYVGYVHCKAVI------RNRDGKLVAVPPSAADLQYWQRLLQHFPEGV-AIEYPLQGDDLLSLSRRHIAALARLGQPQEE......... 258
6 -7.3803cny_A mol:protein length:301 Inositol catabolism protein IolE  ali model follow..  5..KAEKDIKWGIAGWRNDDIPSIGKDNNLQQLLSDFQGTEVGGFFPGPEKLNYELK---------LRNLEIAGQWFSSYIIRDGIEKASEAFEKHCQYLKAINAPRSDTANIFKDKPYFTDKDEVCKGLNHYGEIAAKYGLKVAYHHHMGTGIQTKEETDRLMANTDPKLVLYDTGHIAVSDGDYMALLNAHIDRVVHVHFKDVRRSKEEECRAKGLTFQGSFLNGMFTDFKPVYDKLIANNYKGWIVVEAEQDEMAQIAHRYIKQHL............... 298
7 -7.3202oog_A mol:protein length:287 Glycerophosphoryl diester phosphodiesterase  ali model follow..  28...............AHRGASGYAPEHTFQAYDKSHSYIEID---------------LQRTKDGHLV-------AMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVY-PGMEEQLLASLKKHHLGHVMIQSFSDESLK---KIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVF............... 267
8 -7.1503VNI Entity 1(prereleased)  ali follow..  12  1......AMKHGIYYAYWEQEWEADYKYYIEKVAKLFDILEIAASPLPFYSDIQINELKACA-HGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDL--LKRLYKLDVHLIDYTKTIDKKGDWERSVESVREVAKGVDFCLELNRFENYLINTAQEGVDFVKQVDHNNVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHGRGRIPWVEIGEALADIGYNGSVVMEPFVRMGGTVGSNIKVWRDISNGADEKMLDREAQAALDFSRYVLECHKH......... 293
9 -7.0802pb9_A mol:protein length:195 Phosphomethylpyrimidine kinase  ali model follow..  1.....................................................MSLEKWRIYEELTNAVREFESINPVRLIPEVGTNFVYSLPL--STKDVAGVKGRINSVKAVGPVEFGASDHLARAVLTYMRFYPEYRSAINIR----YSREIIEEIIEIAQERGFKVSFYDRREEPE---------------------------EIKAKEGATIPWGIETAIKRIKERPDIIYHLGDVGKEPMILVFGRNPREVLEKIKMLIE................. 188
10 -6.9702p7h_A mol:protein length:250 Hypothetical protein  ali model follow..  42..RPGNLLELGSFKGDF--------TSRLQEHFNDITCVEASEEAISHAQGRLKDG-FEDAQLPRRYNIVLTHVLEH---IDDPVALLKRINDDWLAE----------GRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYAL---DTLERDASRAGLQVTYRSG............................................................................................................ 198

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.