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1uzjA
Query: 1uzj_A mol:protein length:162 FIBRILLIN-1, from PDB0312

Results of FFAS03 search in PDB0312
Master-slave alignment does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCDLast
1 -67.0001uzj_A mol:protein length:162 FIBRILLIN-1  ali model  100  1TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 162
2 -47.3001z1y_A mol:protein length:186 ookinete surface protein Pvs25  ali model follow..  16  2AEASAVTVDTICKNGQLVQMSNHFKCMCNEGLVHL-SENTCEEKNECKKEIENPDPAQVNMYKCGCIEGYTLKEDTCVLDVYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPDEKKCTKTGETACQLKCNDNEVCKNVEGVYKCQCMEGFTFDKEKNVC. 177
3 -45.9002w86_A mol:protein length:147 FIBRILLIN-1  ali model follow..  37  2ADIDECESSP-CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGT------CWQTVIDGRCEININGATLKSQCCSSLG--------AAWGSPCTLCQVDPICGKGYSRI-KGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC. 146
4 -35.6001gl4_A mol:protein length:285 NIDOGEN-1  ali model follow..  3LAQQTCANNRHQCSAECRDYATGFCCRCVANYT--GNGRQCVAEGSPQRVNGKV---------------------------------KGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLPLAPIGGIIGWMFAVEQDGF--KNGFSIT 130
5 -34.5002bo2_A mol:protein length:143 EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE  ali model follow..  19  1.DSRGCARW-----PQDSSCVNATACRCNPGFSITTPMETCDDINECACGKFSDCWNTEGSYDCVCSPGYEPVSGAKTF--------------------------------KNESENTCQDVDECSSGQHQCDSTVCFNTVGSYSCRCRPGWKPRHGIPNN. 136
6 -29.9003gis_X mol:protein length:121 Thrombomodulin  ali model follow..  26  3.PVDPCFRAN--CEYQCQPLQTSYLCVCAEGFAPIPEPHRCQLFCNQ------------------------------------------TACPADCDPNTQASCECPEGYILD-DGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSALAGQIGTD. 117
7 -29.1001lmj_A mol:protein length:86 fibrillin 1  ali model follow..  42  1TDIDECRISPDLCRGQCVNTPGDFECKCDEGYESGFM-----------------------------------------------------------------------------MMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC. 85
8 -28.4001dx5_I mol:protein length:118 THROMBOMODULIN  ali model follow..  26  3.PVDPCFRAN--CEYQCQPLQTSYLCVCAEGFAPIPEPHRCQMFCNQ------------------------------------------TACPADCDPNTQASCECPEGYILD-DGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSALAGQIGT.. 116
9 -27.8002w2m_E mol:protein length:107 LOW-DENSITY LIPOPROTEIN RECEPTOR  ali model follow..  20  1.................MKPMSDYDIPTTENLYFQG-----------------------------------------AMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACK 101
10 -23.6003gcw_E mol:protein length:83 Low-density lipoprotein receptor  ali model follow..  37  3MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-------------------------------------------------------------------------------RCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACK 83
11 -23.5001nfu_B mol:protein length:195 COAGULATION FACTOR XA, LIGHT CHAIN  ali model follow..  15  40KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDGDCDQFCHEEQNSVVCSCARGYTLADNGKACI--PTGPYPCGKQTLERRKRSVAQATSSSGE--APDSITWKPYDAADLDPTE-NPFDLLDFNQTQPERGDNNLT......... 188
12 -23.5001emn_A mol:protein length:82 FIBRILLIN  ali model follow..  36  3VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA--------------------------------------------------------------------------------GNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPG-PMMTCE 82
13 -23.0001z6c_A mol:protein length:87 Vitamin K-dependent protein S  ali model follow..  24  2.DVDECSLKPSICTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENCAQLCVNYPGGYTCY--------------------------------------CDGKKGFKLAQDQKSCEVVS....................................... 87
14 -21.8002vj3_A mol:protein length:135 NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1  ali model follow..  20  3QDVDECSLGANPCAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY--EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT-----------HLCQVDLHHILDAQKMV....................... 131
15 -20.6001p0s_L mol:protein length:138 Coagulation factor X precursor  ali model follow..  15  1....................ANSFLEEMKKGHL----ERECMEETCSYEEAREVFEDSDKTNEFWN----------KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCEFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 125
16 -20.3001pfx_L mol:protein length:146 FACTOR IXA  ali model follow..  15  1...............................YNSGKLEEFVRGNLERECIEEKCSFEEAREVFENTEKTN--EFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCK 125
17 -20.0001dan_L mol:protein length:152 BLOOD COAGULATION FACTOR VIIA light chain  ali model follow..  15  2.....................NAFLEELRPGSLER------------ECKEEQCSFEEAREIFKDAERTK--LFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128
18 -18.7003kl6_B mol:protein length:57 Coagulation Factor X light chain  ali model follow..  18  3.ARKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC................................................................................................................. 50
19 -18.7002kl7_A mol:protein length:71 Fibulin-4  ali model follow..  21  1SDVNECLTIPEACEMKCINHYGGYLCLPRSAAVINDLHGEGPP-----------PPVPPAQHPNPCPPGYEPDDQDSCVD.................................................................................. 71
20 -18.6003s3y_A mol:protein length:213 TANDEM CYANOVIRIN-N DIMER CVN2L0  ali model follow..  39IDLNSVIENVDGCRNTQLAGSSELAAECKTRA--QQFVSTKINLDDHIANIDGTLKYELGKFSQTCY--------------------------NSAIQGSVLTSTCERTN--GGYNTSSIDLNSVIENVDGSCRNTQLAGSSELAAECKTRA.......... 183
21 -18.3001aut_L mol:protein length:114 ACTIVATED PROTEIN C  ali model follow..  19  13...............................................................................PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREV-SFLNCSLDNGGC-THYCLEEVGWRRCSCAPGYKLGDDLLQCH 93
22 -17.5001fax_L mol:protein length:96 FACTOR XA  ali model follow..  24  2KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCE-----------------------------------------------------------------------------LFTRKLCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACI 82
23 -17.3001apq_A mol:protein length:53 COMPLEMENT PROTEASE C1R  ali model follow..  34  1......................................................................................................................AVDLDECASRSKSGEQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
24 -17.2002gd4_L mol:protein length:58 Coagulation factor X, Stuart factor, Stuart-P  ali model follow..  19  3...KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC................................................................................................................. 48
25 -16.9001yo8_A mol:protein length:634 thrombospondin-2  ali model follow..  17  1ADPDGCLSNPCFPGAQCSSFPGSWSCFCPVGFL--GNGTHCEDLDECSTSKVPRCVNTQPGFHCPCPPRYRGNQ-----------------------------PVGVGLEAAKTEKQVCEPENPCKDKTHNCHKYLGHFSDPMYKCECQTGYAGDGLICGED 147
26 -16.6004D90 Entity 1(prereleased)  ali follow..  21  1...DICDPNPCENGGICLPADGSFSCECPDGFTDPNCSSVVEVASDEEEPT----------------------------SAGPCTPNPCHNGGTCEDTFIGYVCKCPRGFN----GIHCQNINECEVEP-CKNGGICTDLVANYSCECPGEFM----GRNCQ 132
27 -15.9001dqb_A mol:protein length:83 THROMBOMODULIN  ali model follow..  17  3EPVDPCFRAN-CEYQCQPLNQTSYLCVCAEGFAPIPEPHRCQMFCNQTACPA--DCDPNTQASCECPEGYILDDGFICTDIDE............................................................................... 83
28 -15.3001kig_L mol:protein length:51 FACTOR XA  ali model follow..  20  1.....CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPC................................................................................................................. 44
29 -15.3002ra0_L mol:protein length:51 Coagulation factor X  ali model follow..  20  2.....CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC................................................................................................................. 45
30 -15.1003kcg_L mol:protein length:59 Coagulation factor IXa light chain  ali model follow..  17  3...VTCNIKNGRCEQFCKNSANKVVCSCTEGYRLAENQKSCEPAVPFPCG................................................................................................................ 50
31 -15.0002vj2_A mol:protein length:169 JAGGED-1  ali model follow..  16  26...KFCRPRDDFFGHYACD--QNGNKTCMEGWM----GPEC-NRAICRQGCSPKHGSCKLPGDCRCQYGWQGL------YCDKCIPHPGCVHGICNE---PWQCLCETNWG----GQLCDDLNYCGTHQPCLNGGTCSNTPDKYQCSCPEGYS----GPNCE 162
32 -15.0003TH2 Entity 1(prereleased)  ali follow..  17  2...........................................................NAFLXRTKLFW-----ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 99
33 -14.8002npr_A mol:protein length:90 Merozoite surface protein 1  ali model follow..  14  2.............................................................................MSSEHTCIDTNVPDNAACYRYDGTEEWRCLLTFKEEGGKCVPASNVTCKDNNGGCAEAECKMTSNKIVCKCTKEGSEPLEGVFCS 90
34 -14.7001cej_A mol:protein length:96 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  15  3...............................................................................SQHQCVKKQCPQNSGCRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDDAKCTEEDSGITCECTKPDSYPFDGIFCS 93
35 -14.6001b9w_A mol:protein length:95 PROTEIN (MEROZOITE SURFACE PROTEIN 1)  ali model follow..  13  3...............................................................................SEHRCIDTNVPENAACYRYDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAEAECKMNKNEIVCKCTKEGSEPLEGVFCS 89
36 -14.0001ob1_C mol:protein length:99 MAJOR MEROZOITE SURFACE PROTEIN  ali model follow..  13  1.NISQHQCVKKQCNSGCFHLDEREECKCLLNYK--QEGDKCVENPNPTCN---------------------------------------------------------------------ENNGGCDA-DAKCTEEDSGSNGKKITCECTKPDSYPFDGIFCS 93
37 -14.0001n1i_A mol:protein length:105 Merozoite surface protein-1  ali model follow..  16  7.............................................................................MSSAHKCIDTNVPENAACYRYDGTEEWRCLLGFKEVGGKC-VPASITCEENNGGCAEAECTMDDKEVECKCTKEGSPLFEGVFCS 94
38 -13.8002wph_E mol:protein length:59 COAGULATION FACTOR IXA LIGHT CHAIN  ali model follow..  18  2.....CNIKNGRCEQFCKNSANKVVCSCTEGYRLAENQKSCEPAVPFPC................................................................................................................. 46
39 -13.7001rfn_B mol:protein length:57 PROTEIN (COAGULATION FACTOR IX)  ali model follow..  17  3.....CNIKNGRCEQFCKNSANKVVCSCTEGYRLAENQKSCEPAVPFPCG................................................................................................................ 48
40 -13.5002gy5_A mol:protein length:423 Angiopoietin-1 receptor  ali model follow..  14  183.....................RLIVRRCEAQKWGPECNHLCT-----ACMNNGVCHEDTGE--CICPPGFMGRTCEKACEFGRTCKERCSGQEGCKSYPDPYGCSCATGWKGLQCNEACHP-PDCKLRCSCNNGEMCDRFQG---CLCSPGWQ----GLQCE 319
41 -13.3003zyj_B mol:protein length:426 NETRIN-G1  ali model follow..  12  289SDIKVRGRCKCNLHATCVYDNSKLTCECEHNTTGPDCGK-CKKNYQGRPWSPGSYLPIPKGAANACIPSIS----SIGTNVCDNELLHCQNGGTCHNNV---RCLCPAAYT----GILC---EKLRCEEA----GSCGSDSGQ--GAPPHG........... 419
42 -13.1003s3z_A mol:protein length:223 Tandem Cyanovirin-N Dimer CVN2L10  ali model follow..  39IDLNSVIENVDGCRNTQLAGSSELAAECKTRA--QQFVSTKINLDDH-------IANIDGTLKYEGGSGGGGSGGKFSQTCYNSAIQGSVLTSTCERTNGGYNT-------------SSIDLNSVIENVDG-CRNTQLAGSSELAAECKTRA.......... 193
43 -12.6002i9a_A mol:protein length:145 Urokinase-type plasminogen activator  ali model follow..  10  5ELHQVPSNCDCLNGGTCVSNKNIHWCNCPKKFGGQHCEIDKSKYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQTYHAHRSDALQLGLGKHNYCRNPDNRRRPWCYVQVGLKPLVQEC-MVHDCADG.................................. 136
44 -12.5001whe_A mol:protein length:86 COAGULATION FACTOR X  ali model follow..  14  2.........................................................................NSFLEEVKQGNLERECLEEACSLEEAREVFEDAEQTDEFWSKY---KDGDQCEGHP-CLNQGHCKDGIGDYTCTCAEGF----EGKNCE 82
45 -11.9003h5c_B mol:protein length:317 Vitamin K-dependent protein Z  ali model follow..  22  4...............................................................................GGSPCISQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCEAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC. 82
46 -11.8002ygq_A mol:protein length:324 WNT INHIBITORY FACTOR 1  ali model follow..  15  144...KTCQQA--ECPGGCRNGNERRICECPDGFHGPHCEKALCT----RCMNGGLCVT---PGFCICPPGFYGVNCDKANCSTTCFNGG--------TCFYPGKCICPPGLEGEQNGGKCIGKSKCKCSKGCGAHGTCHE---PNKCQCQEGWH----GRHCN 307
47 -11.2001xfe_A mol:protein length:83 Low-density lipoprotein receptor  ali model follow..  25  21..................................................................................................TLDKVCNMARDCRDWSDEPIKEGTNECLDNNGGCSH-VCNDLKIGYECLCPDGFQLVAQRR-CE 83
48 -11.1003s94_A mol:protein length:619 Low-density lipoprotein receptor-related prot  ali model follow..  31  571..........................................................................................................................NPCAEENGGC-SHLCLYRPQGLRCACPIGFELISDMKTC. 608
49 -11.0003soq_A mol:protein length:318 Low-density lipoprotein receptor-related prot  ali model follow..  30  268...NPCGIDNGGCSHLCLMSPPFYQCACPTGVKLLENGKTCKDGNS.................................................................................................................... 312
50 -11.0003s2k_A mol:protein length:629 Low-density lipoprotein receptor-related prot  ali model follow..  21  576.RQHPCAQDNGGCSHICLVKGGTTRCSCPMHLVLLQDELSCGE....................................................................................................................... 618
51 -10.3004a0p_A mol:protein length:628 LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROT  ali model follow..  23  580...HPCAQDNGGCSHICLKGDGTTRCSCPMHLVLLQDELSCGGTK..................................................................................................................... 622
52 -10.2003loh_E mol:protein length:917 Insulin receptor  ali model follow..  13  155............CGDICPGTAKG-KTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC---------HSECLGNCSQPDDPTKCVACRNFYLDGRCTCPPPYYHF-QDWRCVNFSFCQDLHHKCKNS-RRQGCHQYKCECPSGYTMNSSNLLCT 302
53 -9.9603s8v_A mol:protein length:623 Low-density lipoprotein receptor-related prot  ali model follow..  25  577..........................................................................................................................HPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC. 615
54 -9.9402dtg_E mol:protein length:897 Insulin receptor  ali model follow..  13  149......KDDNEECGDICPGTAKG-KTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC---------HSECLGNCSQPDDPTKCVACRNFYLDGRCTCPPPYYHF-QDWRCVNFSFCQDLHHKCKNSRRQGCHQYVKCECPSGYTMNSSNLLCT 302
55 -9.9003m0c_C mol:protein length:791 Low-density lipoprotein receptor  ali model follow..  13  9...VALLLAAAAVGDRC--ERNEFQCKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT--CGPASFQCNSSTCIPQLWACDDPDCEDGSDEWPQRCRGLYVFQGDSSPCS 195
56 -9.8401tpg_A mol:protein length:91 T-PLASMINOGEN ACTIVATOR F1-G  ali model follow..  20  1............................................................SYQVICRDEKTQMI----YQQHQSWLRP------VLRSNRVEYCWCNSGRA----QCHSVPVKSCSEPR-CFNGGTCQQALSDFVCQCPEGFA----GKSCE 85
57 -9.7201xdt_R mol:protein length:79 HEPARIN-BINDING EPIDERMAL GROWTH FACTOR  ali model follow..  24  36........................................................................................................................KRDPCLRKKDFCIHGECVKELRAPSCICHPGYH----GERCH 76
58 -9.4701nzi_A mol:protein length:159 Complement C1s component  ali model follow..  33  116........................................................................................................................DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
59 -9.4202pe4_A mol:protein length:424 Hyaluronidase-1  ali model follow..  13  304.....................................................SWENTRTKESCQAIKEYMDTILNVTSGALLCSQALCSGHGRCRTSHPKALLLLNPASF----SIQLTPGGGPLSLRGALSLEDQAQMAVEFKCRCYPGWQ----APWCE 411
60 -9.2903f1s_B mol:protein length:283 Vitamin K-dependent protein Z  ali model follow..  30  3..........................................................................................................................NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC. 41
61 -9.2901edm_B mol:protein length:39 FACTOR IX  ali model follow..  33  1VDGDQCESNPCLNGGSCKDDINSYECWCPFGFE................................................................................................................................. 33
62 -9.1401f7e_A mol:protein length:46 PROTEIN (Blood Coagulation Factor VII)  ali model follow..  36  1SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE................................................................................................................................. 33
63 -9.0102ok5_A mol:protein length:752 Complement factor B  ali model follow..  15  15....SCSLEGVEIKGGSFRLLQALEYVCPSGFYPPVQTRTCRSTGSWS-TLKTQDQKTVRKAECR---------AIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSARTCQQTAICDNGAGYCSNGSQYRLEDSVTYHCSRGLTLRGSQRTCQ 185

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.